ABSTRACTMycobacterium tuberculosis(Mtb)lipoproteins are known to facilitate bacterial survival by manipulating the host immune responses. Here, we have characterized a novelMtblipoprotein LprE(LprEMtb), and demonstrated its role in mycobacterial survival. LprEMtbacts by down-regulating the expression of cathelicidin, Cyp27B1, VDR and p38-MAPK via TLR-2 signaling pathway. Deletion oflprEMtbresulted in induction of cathelicidin and decreased survival in the host. Interestingly, LprEMtbwas also found to inhibit autophagy mechanism to dampen host immune response. Episomal expression of LprEMtbin non-pathogenicMycobacterium smegmatis(Msm) increased bacillary persistence by down-regulating the expression of cathelicidin and autophagy, while deletion of LprEMtborthologue inMsm, had no effect on cathelicidin and autophagy expression. Moreover, LprEMtbblocked phago-lysosome fusion by suppressing the expression of EEA1, Rab7 and LAMP-1 endosomal markers by down-regulating IL-12 and IL-22 cytokines. Our results indicate that LprEMtbplays an important role in mycobacterial pathogenesis in the context of innate immunity.