scholarly journals Diversity of Bacterial Community in the Oxygen Minimum Zones of Arabian Sea and Bay of Bengal as Deduced by Illumina Sequencing

2020 ◽  
Vol 10 ◽  
Author(s):  
Genevieve L. Fernandes ◽  
Belle Damodara Shenoy ◽  
Samir R. Damare
2019 ◽  
Author(s):  
Jovitha Lincy ◽  
Cathrine Manohar

Abstract. The Northern Indian Ocean host two recognized Oxygen Minimum Zones (OMZ): one in the Arabian Sea and the other in the Bay of Bengal region. The next-generation sequencing technique was used to understand the total bacterial diversity from the surface sediment of off Goa within the OMZ of Arabian Sea, and from off Paradip within the OMZ of Bay of Bengal. The dominant phyla identified include Firmicutes (33.06 %) and Proteobacteria (32.44 %) from the Arabian Sea, and Proteobacteria (52.51 %) and Planctomycetes (8.63 %) from the Bay of Bengal. Statistical analysis indicates that bacterial diversity from sediments of the Bay of Bengal OMZ is ~ 48 % higher than the Arabian Sea OMZ. Diverse candidate bacterial clades were also detected, whose function is unknown, but many of these were reported from other OMZs as well, suggesting their putative role in sediment biogeochemistry. Bacterial diversity from the present study reveals that the off Paradip site of Bay of Bengal OMZ is highly diverse and unexplored in comparison to the off Goa site of the Arabian Sea OMZ. Functional diversity analysis indicates that the relative percentage distribution of genes involved in methane, nitrogen, sulfur and many unclassified energy metabolisms is almost the same in both sites, reflecting a similar ecological role, irrespective of the differences in phylotypic diversity.


2020 ◽  
Author(s):  
Jovitha Lincy ◽  
Cathrine Sumathi Manohar

Abstract. The Northern Indian Ocean hosts two Oxygen Minimum Zones (OMZ), one in the Arabian Sea and the other in the Bay of Bengal. High-throughput sequencing was used to understand the total bacterial diversity in, the surface sediment off Goa within the OMZ of the Arabian Sea, and from off Paradip within the OMZ of the Bay of Bengal. The dominant phyla identified included Firmicutes (33.08 %) and Proteobacteria (32.59 %) from the Arabian Sea, and Proteobacteria (52.65 %) and Planctomycetes (9.36 %) from the Bay of Bengal. Only 30 % of OTUs were shared between the sites which make up three-fourth of the Bay of Bengal OMZ bacterial community, but only one-fourth of the Arabian Sea OMZ sediment bacterial community. Statistical analysis indicated the bacterial diversity from sediments of the Bay of Bengal OMZ is ~ 48 % higher than the Arabian Sea OMZ. The community analysis combined with a predictive functional profiling of 16S rRNA amplicons pinpointed the occurrence of specific enzymes that are crucial in the cycling of nitrogen and sulfur compounds, with major differences regarding nitrogen fixation and carbon recycling.


2014 ◽  
Vol 73 (1) ◽  
pp. 51-67 ◽  
Author(s):  
A Jain ◽  
M Bandekar ◽  
J Gomes ◽  
D Shenoy ◽  
RM Meena ◽  
...  

2020 ◽  
Vol 17 (23) ◽  
pp. 6051-6080
Author(s):  
Tim Rixen ◽  
Greg Cowie ◽  
Birgit Gaye ◽  
Joaquim Goes ◽  
Helga do Rosário Gomes ◽  
...  

Abstract. Decreasing concentrations of dissolved oxygen in the ocean are considered one of the main threats to marine ecosystems as they jeopardize the growth of higher organisms. They also alter the marine nitrogen cycle, which is strongly bound to the carbon cycle and climate. While higher organisms in general start to suffer from oxygen concentrations < ∼ 63 µM (hypoxia), the marine nitrogen cycle responds to oxygen concentration below a threshold of about 20 µM (microbial hypoxia), whereas anoxic processes dominate the nitrogen cycle at oxygen concentrations of < ∼ 0.05 µM (functional anoxia). The Arabian Sea and the Bay of Bengal are home to approximately 21 % of the total volume of ocean waters revealing microbial hypoxia. While in the Arabian Sea this oxygen minimum zone (OMZ) is also functionally anoxic, the Bay of Bengal OMZ seems to be on the verge of becoming so. Even though there are a few isolated reports on the occurrence of anoxia prior to 1960, anoxic events have so far not been reported from the open northern Indian Ocean (i.e., other than on shelves) during the last 60 years. Maintenance of functional anoxia in the Arabian Sea OMZ with oxygen concentrations ranging between > 0 and ∼ 0.05 µM is highly extraordinary considering that the monsoon reverses the surface ocean circulation twice a year and turns vast areas of the Arabian Sea from an oligotrophic oceanic desert into one of the most productive regions of the oceans within a few weeks. Thus, the comparably low variability of oxygen concentration in the OMZ implies stable balances between the physical oxygen supply and the biological oxygen consumption, which includes negative feedback mechanisms such as reducing oxygen consumption at decreasing oxygen concentrations (e.g., reduced respiration). Lower biological oxygen consumption is also assumed to be responsible for a less intense OMZ in the Bay of Bengal. According to numerical model results, a decreasing physical oxygen supply via the inflow of water masses from the south intensified the Arabian Sea OMZ during the last 6000 years, whereas a reduced oxygen supply via the inflow of Persian Gulf Water from the north intensifies the OMZ today in response to global warming. The first is supported by data derived from the sedimentary records, and the latter concurs with observations of decreasing oxygen concentrations and a spreading of functional anoxia during the last decades in the Arabian Sea. In the Arabian Sea decreasing oxygen concentrations seem to have initiated a regime shift within the pelagic ecosystem structure, and this trend is also seen in benthic ecosystems. Consequences for biogeochemical cycles are as yet unknown, which, in addition to the poor representation of mesoscale features in global Earth system models, reduces the reliability of estimates of the future OMZ development in the northern Indian Ocean.


2020 ◽  
Author(s):  
Shriram N. Rajpathak ◽  
Yugandhara M. Patil ◽  
Roumik Banerjee ◽  
Asmita M. Khedkar ◽  
Pawan G. Mishra ◽  
...  

AbstractThe oxygen minimum zone of the Arabian Sea (AS) and Bay of Bengal (BOB) is rich in organic matter and is an unusual niche. Bacteria present in the oceanic water play an important role in ecology since they are responsible for decomposing, mineralizing of organic matter and in elemental cycling like nitrogen, sulfur, phosphate. This study focuses on culturing bacteria from oxygen minimum zones (OMZ) and non-OMZ regions and their phylogenetic as well as the functional characterization. Genotypic characterization of the isolates using amplified rDNA based 16SrRNA sequencing grouped them into various phylogenetic groups such as alpha-proteobacteria, gamma-proteobacteria and unaffiliated bacteria. The cultivable bacterial assemblages encountered belonged to the genus Halomonas, Marinobacter, Idiomarina, Pshyctobacter and Pseudoalteromonas. Among the enzymatic activities, carbohydrate utilization activity was most predominant (100%) and microorganisms possessed amylase, cellulase, xylanase and chitinase. A large proportion of these bacteria (60%) were observed to be hydrocarbon consuming and many were resistant to ampicillin, chloramphenicol, kanamycin and streptomycin. The high diversity and high percentage of extracellular hydrolytic enzyme activities along with hydrocarbon degradation activity of the culturable bacteria reflects their important ecological role in oceanic biogeochemical cycling. Further assessment confirmed the presence of nitrogen reduction capability in these cultivable bacteria which highlights their importance in oceanic geochemical cycling.


2011 ◽  
Vol 31 (11) ◽  
pp. 1224-1235 ◽  
Author(s):  
M.-J. Gonsalves ◽  
A.L. Paropkari ◽  
C.E.G. Fernandes ◽  
P.A. Loka Bharathi ◽  
L. Krishnakumari ◽  
...  

2020 ◽  
Author(s):  
Allan Devol ◽  
Wendi Ruef

&lt;p&gt;&amp;#160;&lt;/p&gt;&lt;p&gt;At this point ocean deoxygenation is well documented, including in oxygen minimum zones (OMZs).&amp;#160; Within the large OMZs of the Arabian Sea and eastern Pacific are imbedded areas where oxygen concentrations are so low that they are undetectable by routine CTD sensors (oxygen deficient zones, ODZs).&amp;#160; How do we determine if these ODZ are losing O&lt;sub&gt;2&lt;/sub&gt;?&amp;#160; Furthermore, denitrification occurs in oxygen minimum zones (OMZs) so one might hypothesize that denitrification is likewise expanding if oxygen is decreasing.&amp;#160; This is important because the ocean's fixed nitrogen inventory limits the productivity over large marine areas.&lt;/p&gt;&lt;p&gt;We have investigated these questions in the largest OMZ, the eastern tropical North Pacific (ETNP) through an analysis of &amp;#160;6 repeats of a 1000 km transect along 110&lt;sup&gt;o&lt;/sup&gt; West in the heart of the ETNP ODZ between 1971-2019.&amp;#160; We use N*, a stoichiometric parameter calculated from nitrate and phosphate, as our indicator of denitrification. The more Negative N* the more denitrification has occurred. After secondary QC the values of O&lt;sub&gt;2&lt;/sub&gt; concentration between potential density 24.75 and 1000m along with N* were integrated across the transect and over the depth of the ODZ. &amp;#160;&lt;/p&gt;&lt;p&gt;The results show a clear decrease in oxygen inventory along with an increase in N*, suggesting deoxygenation and intensification of denitrification over during the 50 year period. We discuss potential mechanisms for denitrification signal increase including ENSO, Pacific Decadal Oscillation, tropical hurricane intensity, and variations in thermocline depth.&lt;/p&gt;


2016 ◽  
Author(s):  
Mandar Bandekar ◽  
Nagappa Ramaiah ◽  
Anand Jain ◽  
Ram Murti Meena

Abstract. Contributions of microbial communities to biogeochemical processes in oxygen minimum oceanic zones are being realized through the applications of molecular techniques. To understand seasonal and depth-wise variations in bacterial community structure (BCS) in the Arabian Sea oxygen minimum region, extensive sampling and molecular analyses were carried out. 16S rRNA gene sequencing was done to profile the BCS from five depths, surface (5 m), deep chorophyll maximum (43–50 m, DCM), 250 m, 500 m and 1000 m during Spring intermonsoon (SIM), Fall intermonsoon (FIM), and Northeast monsoon (NEM) seasons. Sequencing of 743 chimera-free clones revealed a clear vertical partitioning of BCS between the surface (surface + DCM) and OMZ (250 + 500 + 1000 m) layers. There was no distinct seasonal difference in the BCS. Most 16S rRNA gene sequences were affiliated to Gammaproteobacteria (39.31 %), Alphaproteobacteria (23.56 %) and Cyanobacteria (20.2 %). Higher diversity and OTUs in OMZ predominantly consisting of Alteromonodales, Sphinogomonadales, Rhodobacterales, Burkholderales, and Acidimicrobiales we observed might be due to their microaerophilic metabolism, ability to degrade recalcitrant substrates and assimilate sinking particulate matter. Further hitherto undescribed diversity both in surface and OMZ layers was evidenced. Implicit role of extant bacterial community in denitrification and anammox and in sulphur oxidation is highlighted.


2019 ◽  
Author(s):  
Mandar S. Paingankar ◽  
Kedar Ahire ◽  
Pawan Mishra ◽  
Shriram Rajpathak ◽  
Deepti D. Deobagkar

ABSTRACTLarge oxygen depleted areas known as oxygen minimum zones (OMZ) have been observed in the Arabian Sea and recent reports indicate that these areas are expanding at an alarming rate. In marine waters, oxygen depletion may also be related to global warming and the temperature rise, acidification and deoxygenation can lead to major consequences wherein the plants, fish and other biota will struggle to survive in the ecosystem.The current study has identified the microbial community structure using NGS based metagenomics analysis in the water samples collected at different depth from the oxygen depleted and non-OMZ areas of Arabian Sea. Environmental variables such as depth, site of collection and oxygen concentration appeared to influence the species richness and evenness among microbial communities in these locations. Our observations clearly indicate that population dynamics of microbes consisting of nitrate reducers accompanied by sulphate reducers and sulphur oxidizers participate in the interconnected geochemical cycles of the OMZ areas. In addition to providing baseline data related to the diversity and microbial community dynamics in oxygen-depleted water in the OMZ; such analysis can provide insight into processes regulating productivity and ecological community structure of the ocean.


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