scholarly journals Novel Temporal Expression Patterns of EBF-Binding Proteins in Wing Morphs of The Grain Aphid Sitobion miscanthi

2021 ◽  
Vol 12 ◽  
Author(s):  
Siyu Zhang ◽  
Qian Zhang ◽  
Xin Jiang ◽  
Qian Li ◽  
Yaoguo Qin ◽  
...  
Keyword(s):  
Binding Proteins ◽  
Adult Stage ◽  
Expression Patterns ◽  
Adult Emergence ◽  
Temporal Expression ◽  
Grain Aphid ◽  
Significant Difference ◽  
Before And After ◽  
Temporal Expression Pattern ◽  
Odorant Binding

High chemosensitivity of insects to volatile organic compounds (VOC) stimuli is mediated by odorant binding proteins (OBPs). In aphids, three OBPs (OBP3, OBP7 and OBP9) are E-β-farnesene (EBF)-binding proteins. Winged aphids are generally more sensitive than wingless aphids to VOCs, thus, wing presence is a phenotypic correlate of olfaction sensitivity. Here, we investigate the detailed temporal expression of these EBF-binding proteins and two other OBPs (OBP6 and OBP10), in the grain aphid Sitobion miscanthi 0 h, 2 h, 1 day, 3 days, 10 days, and 20 days after adult emergence. Both winged and wingless aphids were examined to further uncover phenotypic specification. Then, the expression patterns before and after EBF induction were analyzed. Throughout adulthood, only OBP7 had significantly higher antennal expression in winged aphids; however, there was no significant difference in the antennal expression of OBP3 between wing morphs at most time points. Except it was lower in newly emerged winged aphids but increased rapidly to the same level in wingless aphids at 1 day. OBP9 did not differ in expression between the morphs and was the only OBP that did not exhibit an expression trough at the beginning of the adult stage (0 h). The expression of OBP9 remained relatively stable and high throughout the adult stage in both phenotypes, showing the highest level among the three EBF-binding proteins. After EBF induction, its expression was further up-regulated in both morphs. Therefore, this protein may be an important molecule for EBF recognition in aphids. OBP7 strongly responded to EBF but only in winged aphids, suggesting that this protein is important in the more sensitive EBF recognition process of winged aphids. In addition, the antennal expression level of OBP3 did not respond to EBF induction. These findings revealed a temporal expression pattern of OBPs in aphids and showed that figuring out the pattern is critical for correctly selecting morphs and sampling times, which will support the discovery of reliable findings and allow solid conclusions to be drawn. Our findings also inspire on the interaction mode of the three EBF-binding proteins in relation to EBF perception in aphids.

Expression patterns of odorant-binding proteins in antennae of the moth Manduca sexta

2003 ◽  
Vol 313 (3) ◽  
pp. 321-333 ◽  
Author(s):  
James B. Nardi ◽  
Lou Ann Miller ◽  
Kimberly K. O. Walden ◽  
Susan Rovelstad ◽  
Liping Wang ◽  
...  
Keyword(s):  
Manduca Sexta ◽  
Binding Proteins ◽  
Expression Patterns ◽  
Odorant Binding Proteins ◽  
Odorant Binding

scholarly journals BEST: a web server for brain expression Spatio-temporal pattern analysis

2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Liyuan Guo ◽  
Wei Lin ◽  
Yidan Zhang ◽  
Wenhan Li ◽  
Jing Wang
Keyword(s):  
Gene Expression ◽  
Expression Pattern ◽  
Temporal Pattern ◽  
Pattern Analysis ◽  
Expression Patterns ◽  
Temporal Expression ◽  
Expression Pattern Analysis ◽  
Brain Expression ◽  
Spatio Temporal ◽  
Temporal Expression Pattern

Abstract Background Dysregulated gene expression patterns have been reported in several mental disorders. Limited by the difficulty of obtaining samples, psychiatric molecular mechanism research still relies heavily on clues from genetics studies. By using reference data from brain expression studies, multiple types of comprehensive gene expression pattern analysis have been performed on psychiatric genetic results. These systems-level spatial-temporal expression pattern analyses provided evidence on specific brain regions, developmental stages and molecular pathways that are possibly involved in psychiatric pathophysiology. At present, there is no online tool for such systematic analysis, which hinders the applications of analysis by non-informatics researchers such as experimental biologists and clinical molecular biologists. Results We developed the BEST web server to support Brain Expression Spatio-Temporal pattern analysis. There are three highlighted features of BEST: 1) visualization: it generates user-friendly visual results that are easy to interpret, including heatmaps, Venn diagrams, gene co-expression networks and cluster-based Manhattan gene plots; these results illustrate the complex spatio-temporal expression patterns, including expression quantification and correlation between genes; 2) integration: it provides comprehensive human brain spatio-temporal expression patterns by integrating data from currently available databases; 3) multi-dimensionality: it analyses input genes as both a whole set and several subsets (clusters) which are enriched according to co-expression patterns, and it also presents the correlation between genetic and expression data. Conclusions To the best of our knowledge, BEST is the first data tool to support comprehensive human brain spatial-temporal expression pattern analysis. It helps to bridge disease-related genetic studies and mechanism studies, provides clues for key gene and molecular system identification, and supports the analysis of disease sensitive brain region and age stages. BEST is freely available at http://best.psych.ac.cn.

Poly(A)-binding proteins are required for translational regulation in vertebrate oocytes and early embryos

2017 ◽  
Vol 29 (10) ◽  
pp. 1890 ◽  
Author(s):  
Saffet Ozturk ◽  
Fatma Uysal
Keyword(s):  
Translational Regulation ◽  
Binding Proteins ◽  
Binding Protein ◽  
Expression Patterns ◽  
Regulation Of Gene Expression ◽  
Early Embryo ◽  
Temporal Expression ◽  
Early Embryo Development ◽  
Early Embryos ◽  
Specific Sequences

Poly(A)-binding proteins (PABPs) function in the timely regulation of gene expression during oocyte maturation, fertilisation and early embryo development in vertebrates. To this end, PABPs bind to poly(A) tails or specific sequences of maternally stored mRNAs to protect them from degradation and to promote their translational activities. To date, two structurally different PABP groups have been identified: (1) cytoplasmic PABPs, including poly(A)-binding protein, cytoplasmic 1 (PABPC1), embryonic poly(A)-binding protein (EPAB), induced PABP and poly(A)-binding protein, cytoplasmic 3; and (2) nuclear PABPs, namely embryonic poly(A)-binding protein 2 and nuclear poly(A)-binding protein 1. Many studies have been undertaken to characterise the spatial and temporal expression patterns and subcellular localisations of PABPC1 and EPAB in vertebrate oocytes and early embryos. In the present review, we comprehensively evaluate and discuss the expression patterns and particular functions of the EPAB and PABPC1 genes, especially in mouse and human oocytes and early embryos.

scholarly journals Spatio-Temporal Expression Pattern of Ki-67, pRB, MMP-9 and Bax in Human Secondary Palate Development

Life ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 164
Author(s):  
Tanja Šimić Bilandžija ◽  
Katarina Vukojević ◽  
Anka Ćorić ◽  
Ivna Vuković Kekez ◽  
Ivana Medvedec Mikić ◽  
...  
Keyword(s):  
Expression Pattern ◽  
Temporal Expression ◽  
Immunohistochemical Expression ◽  
Ki 67 ◽  
Palate Development ◽  
Significant Difference ◽  
Secondary Palate ◽  
Spatio Temporal ◽  
Apoptotic Activity ◽  
Temporal Expression Pattern

We analyzed the immunohistochemical expression of Ki-67, pRb, Bax, and MMP-9 during the human secondary palate formation (7th to 12th developmental weeks (DWs). The most significant proliferation was observed in the seventh DW with 32% of Ki-67-positive cells in the epithelium, while loose ectomesenchyme condensations (lec) and loose non-condensing ectomesenchyme (lnc) had only 18 and 11%, respectively (Kruskal–Wallis, p < 0.001), and diminished afterwards. Contrarily, pRb-positive cells were mostly located in the lnc (67%), with significant difference in comparison to epithelium and lec in all investigated periods (Kruskal–Wallis, p < 0.001). Ki-67- and pRb-positive cells co-expressed occasionally in all investigated periods. MMP-9 displayed a strong expression pattern with the highest number of positive cells during the seventh DW in the epithelium, with significant difference in comparison to lec and lnc (Kruskal–Wallis, p < 0.0001). The ninth DW is particularly important for the Bax expression, especially in the epithelium (84%), in comparison to lec (58%) and lnc (47%) (Kruskal–Wallis, p < 0.001). The co-expression of Bax and MMP-9 was seen only in the epithelium during seventh and ninth DWs. Our study indicates the parallel persistence of proliferation (Ki-67, pRb) and remodeling (MMP-9) that enables growth and apoptotic activity (Bax) that enable the removal of the epithelial cells at the fusion point during secondary palate formation.

Xenopus Hox-2 genes are expressed sequentially after the onset of gastrulation and are differentially inducible by retinoic acid

Development ◽  
1992 ◽  
Vol 116 (Supplement) ◽  
pp. 195-202 ◽  
Author(s):  
Erik-Jan Dekker ◽  
Maria Pannese ◽  
Erwin Houtzager ◽  
Ans Timmermans ◽  
Edoardo Boncinelli ◽  
...  
Keyword(s):  
Retinoic Acid ◽  
Expression Patterns ◽  
Positional Information ◽  
Developmental Expression ◽  
Temporal Expression ◽  
Mammalian Cell Lines ◽  
All Trans Retinoic Acid ◽  
Temporal Expression Pattern ◽  
Six Genes ◽  
Chromosomal Sequence

In this paper, we review experiments to characterise the developmental expression and the responses to all-trans retinoic acid (RA) of six members of the Hox-2 complex of homeobox-containing genes, during the early development of Xenopus laevis. We showed that the six genes are expressed in a spatial sequence which is colinear with their putative 3′ to 5′ chromosomal sequence and that five of them are also expressed rapidly after the beginning of gastrulation, in a 3′ to 5′ colinear temporal sequence. The sixth gene (Xhox2.9) has an exceptional spatial and temporal expression pattern. The six genes all respond to RA by showing altered spatiotemporal expression patterns, and are also RA-inducible, the sequence of the magnitudes of their RA responses being colinear with their 3′ to 5′ chromosomal sequence, and with their spatial and temporal expression sequences. Our data also reveal that there is a pre-existing anteroposterior polarity in the embryo's competence for a response to RA. These results complement and extend previous findings made using murine and avian embryos and mammalian cell lines. They suggest that an endogenous retinoid could contribute to positional information in the early Xenopus embryo.

scholarly journals Odorant-binding proteins expression patterns in recently diverged species of Anastrepha fruit flies

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Emeline Boni Campanini ◽  
Carlos Congrains ◽  
Felipe Rafael Torres ◽  
Reinaldo Alves de Brito
Keyword(s):  
Binding Proteins ◽  
Expression Patterns ◽  
Fruit Flies ◽  
Odorant Binding Proteins ◽  
Odorant Binding
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