scholarly journals Estimation of Population-Specific Genetic Parameters Important for Long-Term Optimum Contribution Selection—Case Study on a Dairy Istrian Sheep Breed

Animals ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 2356
Author(s):  
Ante Kasap ◽  
Jelena Ramljak ◽  
Marija Špehar

The Istrian sheep breed has been subjected to selection for dairy traits for more than two decades. However, a detailed study of some important population-specific parameters such as effective population size (Ne) and connectedness between flocks has never been carried out. The aim of the study was to examine the above parameters in dairy Istrian sheep subjected to a national selection program. The Ne was estimated as the mean rate of increase in coancestry, and connectedness was determined using four different statistics. The Ne was estimated at 73 animals with pedigree constraints imposed on 4 equivalent generations and 3 full generations. Analysis of ΔNe (“sliding window approach”) revealed a negative ΔNe indicating a progressive loss of genetic variability (ΔNeNEG≥4 = −6.6, p < 0.01; ΔNeNFG≥3 = −4.9, p > 0.05). The overall connectedness (r¯ ~ 0.0001) was below the acceptable level for unbiased ranking of the animals belonging to different flocks (ri,j  = 0.05). OCS appears to be the best option for the long-term survival (self-sufficiency) of the breed, but genetic links between flocks need to be strengthened to allow unbiased ranking of the animals based on the estimated breeding values.

2020 ◽  
Author(s):  
John W. Hargrove ◽  
John Van Sickle ◽  
Glyn A. Vale ◽  
Eric R. Lucas

AbstractAnalysis of genetic material from field-collected tsetse (Glossina spp) in ten study areas has been used to predict that the distance (δ) dispersed per generation increases as effective population densities (De) decrease, displaying negative density dependent dispersal (NDDD). This result is an artefact arising primarily from errors in estimates of S, the area occupied by a subpopulation, and thereby in De, the effective subpopulation density. The fundamental, dangerously misleading, error lies in the assumption that S can be estimated as the area (Ŝ) regarded as being covered by traps. Errors in the estimates of δ are magnified because variation in estimates of S is greater than for all other variables measured, and accounts for the greatest proportion of variation in δ. The errors result in anomalously high correlations between δ and S, and the appearance of NDDD, with a slope of −0.5 for the regressions of log(δ) on log(e), even in simulations where dispersal has been set as density independent. A complementary mathematical analysis confirms these findings. Improved error estimates for the crucial parameter b, the rate of increase in genetic distance with increasing geographic separation, suggest that three of the study areas should have been excluded because b is not significantly greater than zero. Errors in census population estimates result from a fundamental misunderstanding of the relationship between trap placement and expected tsetse catch. These errors are exacerbated through failure to adjust for variations in trapping intensity, trap performance, and in capture probabilities between geographical situations and between tsetse species. Claims of support in the literature for NDDD are spurious. There is no suggested explanation for how NDDD might have evolved. We reject the NDDD hypothesis and caution that the idea should not be allowed to influence policy on tsetse and trypanosomiasis control.Author summaryGenetic analysis of field-sampled tsetse (Glossina spp) has been used to suggest that, as tsetse population densities decrease, rates of dispersal increase – displaying negative density dependent dispersal (NDDD). It is further suggested that NDDD might apply to all tsetse species and that, consequently, tsetse control operations might unleash enhanced invasion of areas cleared of tsetse, prejudicing the long-term success of control campaigns. We demonstrate that NDDD in tsetse is an artefact consequent on multiple errors of analysis and interpretation. The most serious of these errors stems from a fundamental misunderstanding of the way in which traps sample tsetse, resulting in huge errors in estimates of the areas sampled by the traps, and occupied by the subpopulations being sampled. Errors in census population estimates are made worse through failure to adjust for variations in trapping intensity, trap performance, and in capture probabilities between geographical situations, and between tsetse species. The errors result in the appearance of NDDD, even in modelling situations where rates of dispersal are expressly assumed independent of population density. We reject the NDDD hypothesis and caution that the idea should not be allowed to influence policy on tsetse and trypanosomiasis control.


2002 ◽  
Vol 38 ◽  
pp. 9-19 ◽  
Author(s):  
Guy S Salvesen

The ability of metazoan cells to undergo programmed cell death is vital to both the precise development and long-term survival of the mature adult. Cell deaths that result from engagement of this programme end in apoptosis, the ordered dismantling of the cell that results in its 'silent' demise, in which packaged cell fragments are removed by phagocytosis. This co-ordinated demise is mediated by members of a family of cysteine proteases known as caspases, whose activation follows characteristic apoptotic stimuli, and whose substrates include many proteins, the limited cleavage of which causes the characteristic morphology of apoptosis. In vertebrates, a subset of caspases has evolved to participate in the activation of pro-inflammatory cytokines, and thus members of the caspase family participate in one of two very distinct intracellular signalling pathways.


2000 ◽  
Vol 111 (1) ◽  
pp. 363-370 ◽  
Author(s):  
Katsuto Takenaka ◽  
Mine Harada ◽  
Tomoaki Fujisaki ◽  
Koji Nagafuji ◽  
Shinichi Mizuno ◽  
...  

2001 ◽  
Vol 120 (5) ◽  
pp. A747-A748
Author(s):  
S DRESNER ◽  
A IMMMANUEL ◽  
P LAMB ◽  
S GRIFFIN

2006 ◽  
Vol 175 (4S) ◽  
pp. 355-355
Author(s):  
Manuel Eisenberg ◽  
John S. Lam ◽  
Rakhee H. Goel ◽  
Allan J. Pantuck ◽  
Robert A. Figlin ◽  
...  

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