scholarly journals Mitochondrial Genomes from New Zealand’s Extinct Adzebills (Aves: Aptornithidae: Aptornis) Support a Sister-Taxon Relationship with the Afro-Madagascan Sarothruridae

Diversity ◽  
2019 ◽  
Vol 11 (2) ◽  
pp. 24 ◽  
Author(s):  
Alexander Boast ◽  
Brendan Chapman ◽  
Michael Herrera ◽  
Trevor Worthy ◽  
R. Scofield ◽  
...  
Keyword(s):  
New Zealand ◽  
High Throughput Sequencing ◽  
Phylogenetic Analyses ◽  
Divergence Time ◽  
Sister Taxon ◽  
Mitochondrial Genomes ◽  
Taxonomic Assignment ◽  
Long Distance ◽  
Land Bridge ◽  
The North

The recently extinct New Zealand adzebills (Aptornithidae, Aptornis spp.) were an enigmatic group of large flightless birds that have long eluded precise taxonomic assignment as they do not closely resemble any extant birds. Adzebills were nearly wingless, weighed approximately 16–19 kg, and possessed massive adze-like reinforced bills whose function remains unknown. Using hybridisation enrichment and high-throughput sequencing of DNA extracted from subfossil bone and eggshell, near-complete mitochondrial genomes were successfully assembled from the two Quaternary adzebill species: the North Island Adzebill (Aptornis otidiformis) and South Island Adzebill (A. defossor). Molecular phylogenetic analyses confirm that adzebills are members of the Ralloidea (rails and allies) and are sister-taxon to the Sarothruridae, which our results suggest comprises the Madagascan wood rails (Mentocrex, two likely sp.) in addition to the tiny (<50 gram) rail-like Afro-Madagascan flufftails (Sarothrura, 9 spp.). Node age estimates indicate that the split between adzebills and Sarothruridae occurred ~39.6 Ma, suggesting that the ancestors of the adzebills arrived in New Zealand by long-distance dispersal rather than continental vicariance. This newly identified biogeographic link between physically distant New Zealand and Afro-Madagascar, echoed by the relationship between the New Zealand kiwi (Apterygiformes) and Madagascan elephant-birds (Aepyornithiformes), suggests that the adzebill’s near relatives were formerly more widespread. In addition, our estimate for the divergence time between the two Quaternary adzebill species (0.2–2.3 Ma) coincides with the emergence of a land-bridge between the North and South islands of New Zealand (ca. 1.5–2 Ma). This relatively recent divergence suggests that North Island adzebills are the result of a relatively recent dispersal from the South Island, from which the earliest (Miocene) adzebill fossil has been described.

‘Scows, and barges, or other vessels of box model’: Comparative capital investment in the sailing scows of the Great Lakes of North America and in New Zealand

2018 ◽  
Vol 30 (1) ◽  
pp. 89-105
Author(s):  
Jay C. Martin
Keyword(s):  
New Zealand ◽  
North America ◽  
Great Lakes ◽  
Capital Investment ◽  
Open Water ◽  
Long Distance ◽  
American Frontier ◽  
International Context ◽  
The North ◽  
Hull Design

Boxy and with ‘unseaworthy form’, the sailing scow was not the most aesthetically pleasing of watercraft. Yet the durable hull design based upon European predecessors found a new home in North America where it proliferated on the Atlantic, Gulf, Pacific and Great Lakes coasts because of its practicality for largely unimproved waterways. Scows were widely used on the Great Lakes in the nineteenth century, moving beyond shallow waters and gaining a reputation for reliability in long-distance trade. Late in the century, the technology arrived in New Zealand, where it prospered in a niche market that combined open water voyages and shallow river, port, or beach loading and unloading. The Great Lakes scows presented an alternative for entry into ship ownership on the North American frontier. The development of the New Zealand scow confirmed these findings comparatively in an international context during the late nineteenth and early twentieth centuries.

scholarly journals Investigating diversity, evolution, development and physiology of red algal parasites from New Zealand

2021 ◽  
Author(s):  
◽  
Maren Preuss
Keyword(s):  
Host Species ◽  
High Throughput Sequencing ◽  
Phylogenetic Analyses ◽  
Host Cells ◽  
Gene Content ◽  
Infected Host ◽  
Parasite Development ◽  
Future Research ◽  
Mitochondrial Genomes ◽  
Red Algal

<p>Red algal parasites have evolved independently over a 100 times and grow only on other red algal hosts. Most parasites are closely related to their host based on the similarity of their reproductive structures. Secondary pit connections between red algal parasites and their hosts are used to transfer parasite organelles and nuclei into host cells. Morphological and physiological changes in infected host cells have been observed in some species. Parasite mitochondrial genomes are similar in size and gene content to free-living red algae whereas parasite plastids are highly reduced. Overall, red algal parasites are poorly studied and thus the aim of this study was to increase the general knowledge of parasitic taxa with respect to their diversity, evolutionary origin, development, physiology, and organelle evolution. Investigation of the primary literature showed that most species descriptions of red algal parasites were poor and did not meet the criteria for defining a parasitic relationship. This literature study also revealed a lack of knowledge of many key parasitic processes including early parasite development, host cell “control”, and parasite origin. Many of these poorly studied research areas were addressed in this thesis. Phylogenetic analyses, using a range of markers from all three genomes (cpDNA: rbcL, nDNA: actin, LSU rRNA; mtDNA: cox1), showed different patterns of phylogenetic relationships for the four new red algal parasites and their hosts. The parasites Phycodrys novae-zelandiophila sp. nov. and Vertebrata aterrimophila sp. nov. closest relative is its host species. Cladhymenia oblongifoliophila sp. nov. closest relative is its host species based on nuclear and mitochondrial markers whereas the plastid markers group the parasite with Cladhymenia lyallii, suggesting that the parasite plastid was acquired when previously parasitizing C. lyallii. Judithia parasitica sp. nov. grows on two Blastophyllis species but the parasites’ closest relative is the non-host species Judithia delicatissima. Developmental studies of the parasite Vertebrata aterrimophila, showed a unique developmental structure (“trunk-like” cell) not known in other parasites, plus localised infection vi and few changes in infected host cells. High-throughput-sequencing revealed mitochondrial genomes of similar size, gene content and order in the parasite Pterocladiophila hemisphaerica to its host Pterocladia lucida, and a reduced non-photosynthetic plastid in the parasite. Mitochondrial (mt) and plastid (cp) genome phylogenies placed Pterocladiophila hemisphaerica on long branches, either as sister to Ceramiales (mt) or Gracilariales (cp). Further analyses, filtering non-elevated plastid genes grouped the parasite neither with the Gracilariales (mt) or Gelidiales (cp) on shorter branches but without support. Nuclear phylogeny grouped P. hemisphaerica as sister to the Gelidiales and other red algal orders and was the only phylogenetic relationship with support. Investigations of photosystem II capacity using PAM fluorometry, and quantifying chlorophyll a content in three pigmented parasites, showed different host nutrient dependencies. Rhodophyllis parasitica and Vertebrata aterrimophila are not able to photosynthesize and are fully dependent on host nutrients. Pterocladiophila hemisphaerica is able to photosynthesize independently, even though it has a reduced non-photosynthetic plastid genome, and therefore is only partially dependent on its host. This study advances our current understanding of red algal parasites and highlights many possibilities for future research including genome evolution and understanding parasite diversity.</p>

scholarly journals A new iguanodontian (Dinosauria: Ornithopoda) from the Early Cretaceous of Mongolia

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e5300
Author(s):  
Terry A. Gates ◽  
Khishigjav Tsogtbaatar ◽  
Lindsay E. Zanno ◽  
Tsogtbaatar Chinzorig ◽  
Mahito Watabe
Keyword(s):  
Phylogenetic Analysis ◽  
Growth Stage ◽  
Phylogenetic Analyses ◽  
Type Specimen ◽  
Sister Taxon ◽  
New Taxon ◽  
Time Of Death ◽  
The North ◽  
Unusual Combination ◽  
Relationship Of

We describe a new iguanodontian ornithopod,Choyrodon barsboldigen. et sp. nov. from the Albian-aged Khuren Dukh Formation of Mongolia based on several partial skeletons interpreted to represent a subadult growth stage based on osteohistological features. This new taxon is diagnosed by many autapomorphies of the maxilla, nasal, lacrimal, opisthotic, predentary, and surangular.Choyrodondisplays an unusual combination of traits, possessing an open antorbital fenestra (a primitive ornithopod trait) together with derived features such as a downturned dentary and enlarged narial fenestra. Histological imaging suggests that the type specimen ofChoyrodonwould have been a subadult at the time of death. Phylogenetic analysis of two different character matrices do not positChoyrodonto be the sister taxon or to be more primitive than the iguanodontianAltirhinus kurzanovi, which is found in the same formation. The only resolved relationship of this new taxon is that it was hypothesized to be a sister-taxon with the North American speciesEolambia caroljonesa. Though discovered in the same formation andChoyrodonbeing smaller-bodied thanAltirhinus, it does not appear that the former species is an ontogimorph of the latter. Differences in morphology and results of the phylogenetic analyses support their distinction although more specimens of both species will allow better refinement of their uniqueness.

New aristonectine elasmosaurid plesiosaur specimens from the Early Maastrichtian of Angola and comments on paedomorphism in plesiosaurs

2015 ◽  
Vol 94 (1) ◽  
pp. 93-108 ◽  
Author(s):  
R. Araújo ◽  
M.J. Polcyn ◽  
J. Lindgren ◽  
L.L. Jacobs ◽  
A.S. Schulp ◽  
...  
Keyword(s):  
New Zealand ◽  
Histological Analysis ◽  
Phylogenetic Analyses ◽  
External Morphology ◽  
Sister Taxon ◽  
Close Relationship

AbstractNew elasmosaurid plesiosaur specimens are described from the Early Maastrichtian of Angola. Phylogenetic analyses reconstruct the Angolan taxon as an aristonectine elasmosaurid and the sister taxon of an unnamed form of similar age from New Zealand. Comparisons also indicate a close relationship with an unnamed form previously described from Patagonia. All of these specimens exhibit an ostensibly osteologically immature external morphology, but histological analysis of the Angolan material suggests an adult with paedomorphic traits. By extension, the similarity of the Angolan, New Zealand and Patagonian material indicates that these specimens represent a widespread paedomorphic yet unnamed taxon.

Revisiting the biogeography of Sideroxylon (Sapotaceae) and an evaluation of the taxonomic status of Argania and Spiniluma

2014 ◽  
Vol 27 (2) ◽  
pp. 104 ◽  
Author(s):  
Gail Stride ◽  
Stephan Nylinder ◽  
Ulf Swenson
Keyword(s):  
Central America ◽  
North Atlantic ◽  
Divergence Time ◽  
Taxonomic Status ◽  
Migration Route ◽  
Gulf Of Aden ◽  
Long Distance ◽  
The North ◽  
Water Dispersal ◽  
Mascarene Islands

Biogeography of Sideroxylon (Sapotoideae) and whether the satellite genera Argania and Spiniluma merit recognition are revisited. The hypothesis of an African origin with a subsequent migration to Central America via Europe and the North Atlantic landbridge is challenged. We analysed 58 accessions of trnH-psbA and ITS sequences in a fossil-calibrated, relaxed lognormal clock model with BEAST for phylogenetic and biogeographic inference. Argania spinosa (L.) Skeels from Morocco must be united with Sideroxylon, whereas S. discolor Radcl.-Sm. and S. oxyacanthum Baill. belong to subfamily Chrysophylloideae and may be recognised as Spiniluma. The divergence time estimate suggests that Sideroxylon originated and first diversified in Central America 56.3–52.2 million years ago, contemporaneous with the landbridge, but an archipelago of islands and the Tethys Seaway halted eastward expansion to Africa until c.20 million years ago, i.e. 25 million years after establishment in Africa. Range expansion of Sideroxylon was therefore not powered by the landbridge, and a long-distance dispersal from Central America to Africa is proposed. The establishment of the Gomphotherium landbridge between Africa and Eurasia at 19 million years ago provided a land-migration route to Europe and Asia, which is reconcilable with the extension of Xantolis into Asia. Sideroxylon has colonised Socotra by over-water dispersal in the Gulf of Aden, Macaronesia, Madagascar and the Mascarene Islands.

scholarly journals First mitochondrial genomes of five hoverfly species of the genus Eristalinus (Diptera: Syrphidae)

Genome ◽  
2019 ◽  
Vol 62 (10) ◽  
pp. 677-687 ◽  
Author(s):  
Gontran Sonet ◽  
Yannick De Smet ◽  
Min Tang ◽  
Massimiliano Virgilio ◽  
Andrew Donovan Young ◽  
...  
Keyword(s):  
High Throughput Sequencing ◽  
Phylogenetic Analyses ◽  
16S Rrna Genes ◽  
Rrna Genes ◽  
Mitochondrial Genomes ◽  
Base Pairs ◽  
Protein Coding ◽  
Phylogenetic Informativeness ◽  
Molecular Phylogenetic ◽  
Phylogenetic Hypotheses

The hoverfly genus Eristalinus (Diptera, Syrphidae) contains many widespread pollinators. The majority of the species of Eristalinus occur in the Afrotropics and their molecular systematics still needs to be investigated. This study presents the first complete and annotated mitochondrial genomes for five species of Eristalinus. They were obtained by high-throughput sequencing of total genomic DNA. The total length of the mitogenomes varied between 15 757 and 16 245 base pairs. Gene composition, positions, and orientation were shared across species, and were identical to those observed for other Diptera. Phylogenetic analyses (maximum likelihood and Bayesian inference) based on the 13 protein coding and both rRNA genes suggested that the subgenus Eristalinus was paraphyletic with respect to the subgenus Eristalodes. An analysis of the phylogenetic informativeness of all protein coding and rRNA genes suggested that NADH dehydrogenase subunit 5 (nad5), cytochrome c oxidase subunit 1, nad4, nad2, cytochrome b, and 16S rRNA genes are the most promising mitochondrial molecular markers to result in supported phylogenetic hypotheses of the genus. In addition to the five complete mitogenomes currently available for hoverflies, the five mitogenomes published here will be useful for broader molecular phylogenetic analyses among hoverflies.

Phylogeny and Biogeography of Acaena (Rosaceae) and its Relatives: Evidence of Multiple Long-Distance Dispersal Events Across the Globe

2021 ◽  
Vol 46 (4) ◽  
pp. 998-1010
Author(s):  
Javier Jauregui-Lazo ◽  
Daniel Potter
Keyword(s):  
South Africa ◽  
New Zealand ◽  
Southern Hemisphere ◽  
Phylogenetic Analyses ◽  
Strong Support ◽  
Disjunct Distribution ◽  
Long Distance Dispersal ◽  
Long Distance ◽  
Biogeographic Patterns ◽  
Dispersal Events

Abstract— Acaena (Rosaceae) is the most complex and ecologically variable genus in Sanguisorbinae. Although it has been the subject of several taxonomic treatments, the largest phylogenetic analysis to date only sampled a small fraction of the total global diversity (five to seven out of 45 to 50 species). This study included most of the species to elucidate the phylogenetic relationships of Acaena and biogeographic patterns in Sanguisorbinae. Phylogenetic analyses of non-coding nuclear (ITS region) and chloroplast (trnL-F) DNA sequence markers using maximum likelihood and Bayesian analyses suggested that Acaena is a paraphyletic group with species of Margyricarpus and Tetraglochin nested within it. We identified strong support for eight subclades that are geographically or taxonomically structured. Nevertheless, the species-level relationships within subclades are still uncertain, which may be due to rapid diversification and lack of informative characters in the markers used. Sanguisorbinae, a primarily Southern Hemisphere clade, exhibits a classic Gondwana disjunct distribution. This current distribution is explained primarily by eight long-distance dispersal events. Our results suggested that Sanguisorbinae split into Cliffortia and Acaena around 13.6 mya. While Cliffortia diversified in southern South Africa, Acaena experienced several migration events in the Southern Hemisphere. Our estimation of the ancestral range suggested that Acaena likely originated in South Africa, followed by migration and subsequent diversification into southern South America. From there, the genus migrated to New Zealand, throughout the Andes, and to tropical areas in Central America, reaching as far north as California. Chile and New Zealand are the main sources of propagules for dispersal as well as the greatest diversity for the genus. The evolutionary relationships of species in Acaena combine a history of rapid diversifications, long-distance dispersals, and genetic variation within some taxa. Further research should be undertaken to clarify the infraspecific classification of A. magellanica.

Divergence time analyses suggest a Miocene origin of the narrow Amazonian endemic rheophytic Ceratolejeunea temnantha (Spruce) Reiner-Drehwald (Porellales, Lejeuneaceae)

2018 ◽  
Vol 40 (2) ◽  
pp. 55
Author(s):  
ADRIEL M. SIERRA ◽  
JULIA BECHTELER ◽  
DOMINGOS CARDOSO ◽  
CHARLES E. ZARTMAN ◽  
JUAN CARLOS VILLARREAL
Keyword(s):  
Phylogenetic Analyses ◽  
Divergence Time ◽  
Original Description ◽  
Phylogenetic Position ◽  
Ecological Niches ◽  
Divergence Time Estimates ◽  
Potential Habitat ◽  
The North ◽  
Time Estimates ◽  
Rio Negro

The recent rediscovery of the rheophytic endemic Ceratolejeunea temnantha ~130 years after its original description, on the upper Rio Negro in the Brazilian Amazon, has enabled the assessment of its enigmatic phylogenetic position, estimates of its divergence time, and updates on its distribution and potential habitat threats. Phylogenetic analyses strongly supported its placement in the genus Ceratolejeunea in a geographically disparate clade including a Madagascar endemic C. saroltae and two Neotropical taxa, C. confusa and C. caducifolia. Divergence time estimates date the clade’s stem age to the late Miocene (8.92 [HPD: 12.39–6.04] Ma) offering further evidence that the evolution of rheophytes in northern South America is correlated with the expansion of cryptogams into novel ecological niches promoted by dramatic landscape changes during the Miocene. Major geomorphological and hydrological transformations contributing to such diversification are most likely the changing dynamics of the inundated mega lake system to the establishment of the Amazon River due to the Andean orogeny and the subsequent cessation of marine influences in the north-western portion of the Basin. Until recently, this rheophyte of seasonally inundated black-water forests was only known from its type collection from the Rio Negro near São Gabriel da Cachoeira (Brazil) as described by Richard Spruce in 1884. These new collections extend the distribution of this rare narrow endemic to the middle Rio Uaupés, a tributary of the upper Rio Negro near the Columbian border.

scholarly journals The systematic position of the enigmatic thyreophoran dinosaurParanthodon africanus, and the use of basal exemplifiers in phylogenetic analysis

PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4529 ◽  
Author(s):  
Thomas J. Raven ◽  
Susannah C.R. Maidment
Keyword(s):  
South Africa ◽  
Phylogenetic Analysis ◽  
Lower Cretaceous ◽  
Phylogenetic Analyses ◽  
Systematic Position ◽  
Type Material ◽  
Sister Taxon ◽  
Phylogenetic Position ◽  
Taxonomic Assignment

The first African dinosaur to be discovered,Paranthodon africanuswas found in 1845 in the Lower Cretaceous of South Africa. Taxonomically assigned to numerous groups since discovery, in 1981 it was described as a stegosaur, a group of armoured ornithischian dinosaurs characterised by bizarre plates and spines extending from the neck to the tail. This assignment has been subsequently accepted. The type material consists of a premaxilla, maxilla, a nasal, and a vertebra, and contains no synapomorphies of Stegosauria. Several features of the maxilla and dentition are reminiscent of Ankylosauria, the sister-taxon to Stegosauria, and the premaxilla appears superficially similar to that of some ornithopods. The vertebral material has never been described, and since the last description of the specimen, there have been numerous discoveries of thyreophoran material potentially pertinent to establishing the taxonomic assignment of the specimen. An investigation of the taxonomic and systematic position ofParanthodonis therefore warranted. This study provides a detailed re-description, including the first description of the vertebra. Numerous phylogenetic analyses demonstrate that the systematic position ofParanthodonis highly labile and subject to change depending on which exemplifier for the clade Stegosauria is used. The results indicate that the use of a basal exemplifier may not result in the correct phylogenetic position of a taxon being recovered if the taxon displays character states more derived than those of the basal exemplifier, and we recommend the use, minimally, of one basal and one derived exemplifier per clade.Paranthodonis most robustly recovered as a stegosaur in our analyses, meaning it is one of the youngest and southernmost stegosaurs.

scholarly journals The systematic position of the enigmatic thyreophoran dinosaur Paranthodon africanus, and the use of basal exemplifiers in phylogenetic analysis

2018 ◽  
Author(s):  
Tom Raven ◽  
Susannah C. R. Maidment
Keyword(s):  
South Africa ◽  
Phylogenetic Analysis ◽  
Lower Cretaceous ◽  
Phylogenetic Analyses ◽  
Systematic Position ◽  
Type Material ◽  
Sister Taxon ◽  
Phylogenetic Position ◽  
Taxonomic Assignment

The first African dinosaur to be discovered, Paranthodon africanus was found in 1845 in the Lower Cretaceous of South Africa. Taxonomically assigned to numerous groups since discovery, in 1981 it was described as a stegosaur, a group of armoured ornithischian dinosaurs characterised by bizarre plates and spines extending from the neck to the tail. This assignment has been subsequently accepted. The type material consists of a premaxilla, maxilla, a nasal, and a vertebra, and contains no synapomorphies of Stegosauria. Several features of the maxilla and dentition are reminiscent of Ankylosauria, the sister-taxon to Stegosauria, and the premaxilla appears superficially similar to that of some ornithopods. The vertebral material has never been described, and since the last description of the specimen, there have been numerous discoveries of thyreophoran material potentially pertinent to establishing the taxonomic assignment of the specimen. An investigation of the taxonomic and systematic position of Paranthodon is therefore warranted. This study provides a detailed re-description, including the first description of the vertebra. Numerous phylogenetic analyses demonstrate that the systematic position of Paranthodon is highly labile and subject to change depending on which exemplifier for the clade Stegosauria is used. The results indicate that the use of a basal exemplifier may not result in the correct phylogenetic position of a taxon being recovered if the taxon displays character states more derived than those of the basal exemplifier, and we recommend the use, minimally, of one basal and one derived exemplifier per clade. Paranthodon is most robustly recovered as a stegosaur in our analyses, meaning it is one of the youngest and southernmost stegosaurs.

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