scholarly journals Ubiquitous but Ignored? A Case of Water Beetle in Southeastern Europe

Diversity ◽  
2021 ◽  
Vol 14 (1) ◽  
pp. 26
Author(s):  
Vlatka Mičetić Stanković ◽  
Branka Bruvo Mađarić ◽  
Mladen Kučinić
Keyword(s):  
Dna Barcode ◽  
Biological Indicator ◽  
Anthropogenic Pressure ◽  
Ecological Traits ◽  
Southeastern Part ◽  
Water Beetles ◽  
Water Beetle ◽  
Close Phylogenetic Relationship ◽  
Freshwater Habitats ◽  
Relationship Of

Although freshwater habitats, especially springs, are widely recognized as top-priority habitats for monitoring and conservation procedures, their fauna, especially water beetles, are still poorly studied in the southeastern part of Europe. Thus, the dominant water beetle in these habitats, E. bosnica (Zaitzev, 1908) (Insecta: Coleoptera: Elmidae), has been completely ignored and misidentified. This study represents the first review of its taxonomy and its population and ecological traits. Both published and unpublished data are presented and discussed, as well as the results of field sampling in 46 springs and other waterbodies conducted in this region from 2004 to 2019. The identification characters of the male genitalia and the first DNA barcode of the species are presented. The results confirm the close phylogenetic relationship of E. bosnica with E. aenea (Müller, 1806) and E. rioloides (Kuwert, 1890). The species proved to be a useful environmental descriptor and can easily be used as a biological indicator due to its easy identification. The species shows remarkable sensitivity to environmental conditions and inhabits sites that are potentially under increased anthropogenic pressure and could disappear at an alarming rate. Thus, karstic habitats should be included in future conservation and monitoring procedures in this part of Europe.

DISTRIBUTION OF DISSOLVED METHANE IN SURFACE COASTAL WATERS OF THE NORTHEASTERN PART OF THE BLACK SEA

2017 ◽  
Author(s):  
Elena Kovaleva ◽  
Elena Kovaleva ◽  
Alexander Izhitskiy ◽  
Alexander Izhitskiy ◽  
Alexander Egorov ◽  
...  
Keyword(s):  
Black Sea ◽  
Natural Waters ◽  
Sea Water ◽  
The Black Sea ◽  
Methane Formation ◽  
Anthropogenic Pressure ◽  
Russian Science ◽  
Southeastern Part ◽  
Dissolved Methane ◽  
Continental Runoff

Studying of methane formation and distribution in natural waters is important for understanding of biogeochemical processes of carbon cycle, searching for oil and gas sections and evaluation of CH4 emissions for investigations of greenhouse effect. The Black Sea is the largest methane water body on our planet. However, relatively low values of methane concentration (closed to equilibrium with the atmospheric air) are typical of the upper aerobic layer. At the same time, the distribution pattern of CH4 in surface waters of coastal areas is complicated by the influence of coastal biological productivity, continental runoff, bottom sources, hydrodynamic processes and anthropogenic effect. The investigation is focused on the spatial variability of dissolved methane in the surface layer of the sea in coastal regions affected by the continental runoff and anthropogenic pressure. Unique in situ data on methane concentrations were collected along the ship track on 2 sections between Sochi and Gelendzhik (2013, 2014) and 2 sections between Gelendzhik and Feodosia (2015). Overall 170 samples were obtained. Gas-chromatographic analysis of the samples revealed increase of CH4 saturation in the southeastern part of the Crimean shelf and the Kerch Strait area. Such a pattern was apparently caused by the influence of the Azov Sea water spread westward along the Crimean shore from the strait. This work was supported by the Russian Science Foundation, Project 14-50-00095 and the Russian Foundation for Basic Research, Project 16-35-00156 mol_a.

DISTRIBUTION OF DISSOLVED METHANE IN SURFACE COASTAL WATERS OF THE NORTHEASTERN PART OF THE BLACK SEA

2017 ◽  
Author(s):  
Elena Kovaleva ◽  
Elena Kovaleva ◽  
Alexander Izhitskiy ◽  
Alexander Izhitskiy ◽  
Alexander Egorov ◽  
...  
Keyword(s):  
Black Sea ◽  
Natural Waters ◽  
Sea Water ◽  
The Black Sea ◽  
Methane Formation ◽  
Anthropogenic Pressure ◽  
Russian Science ◽  
Southeastern Part ◽  
Dissolved Methane ◽  
Continental Runoff

Studying of methane formation and distribution in natural waters is important for understanding of biogeochemical processes of carbon cycle, searching for oil and gas sections and evaluation of CH4 emissions for investigations of greenhouse effect. The Black Sea is the largest methane water body on our planet. However, relatively low values of methane concentration (closed to equilibrium with the atmospheric air) are typical of the upper aerobic layer. At the same time, the distribution pattern of CH4 in surface waters of coastal areas is complicated by the influence of coastal biological productivity, continental runoff, bottom sources, hydrodynamic processes and anthropogenic effect. The investigation is focused on the spatial variability of dissolved methane in the surface layer of the sea in coastal regions affected by the continental runoff and anthropogenic pressure. Unique in situ data on methane concentrations were collected along the ship track on 2 sections between Sochi and Gelendzhik (2013, 2014) and 2 sections between Gelendzhik and Feodosia (2015). Overall 170 samples were obtained. Gas-chromatographic analysis of the samples revealed increase of CH4 saturation in the southeastern part of the Crimean shelf and the Kerch Strait area. Such a pattern was apparently caused by the influence of the Azov Sea water spread westward along the Crimean shore from the strait. This work was supported by the Russian Science Foundation, Project 14-50-00095 and the Russian Foundation for Basic Research, Project 16-35-00156 mol_a.

scholarly journals DNA barcodes and morphology of P. krempfi, P. mekongensis, and P. elongatus

2016 ◽  
Vol 14 (1) ◽  
pp. 29-37 ◽  
Author(s):  
Dương Thúy Yên ◽  
Nguyễn Kiệt ◽  
Bùi Sơn Nên ◽  
Nguyễn Văn Thường ◽  
Nguyễn Bạch Loan ◽  
...  
Keyword(s):  
Dna Barcode ◽  
Morphological Characteristics ◽  
Mekong Delta ◽  
Genetic Distances ◽  
Dna Barcodes ◽  
Gill Rakers ◽  
Coi Sequences ◽  
Relationship Of ◽  
Metric Traits ◽  
I Gene

Three Pangasius species including P. krempfi, P. elongatus and P. mekongensis, are economically important. They can be mis-identified due to similar external appreance at small sizes. This study aimed to distinguish these species based on their differences in DNA barcode, COI (cytochrome c oxidase subunit I) gene, and morphological characteristics. Fish with various sizes (>90 samples/species) were sampled at the lower Mekong delta region. Kimura-2 parameter genetic distances based on COI sequences of three species (15 samples, in which, 4 unique sequences were assigned Genbank accession numbers from KT289877 to KT289880) are relatively high, ranging 9.33 – 12.10 %. Morphological measurements show that coutanble traits including numbers of fin rays and the first gill rakers vary in similar ranges but ratios of metric traits are significantly different among three species (P<0.01). Principle component analysis using metric traits sets three species apart. P. elongatus is characterized by elongated body, long caudal preduncle, large eyes, and retangle palatine tooth plates. P. krempfi differs from P. mekongesis in characteristics on their head. The number of sections, shape and length of barbel are different among three species. Phylogenetic relationship of three species based on morphology and COI sequences indicate that P. krempfi is closer to P. mekongenis rather than P. elongatus, and that the distance between P. mekongenis and P. elongatus is the largest.

Ecological traits of water beetles in a karstic river from the Eastern Mediterranean region

Limnologica ◽  
2018 ◽  
Vol 71 ◽  
pp. 75-88 ◽  
Author(s):  
Vlatka Mičetić Stanković ◽  
Manfred A. Jäch ◽  
Ivan Vučković ◽  
Aleksandar Popijač ◽  
Mladen Kerovec ◽  
...  
Keyword(s):  
Mediterranean Region ◽  
Eastern Mediterranean ◽  
Eastern Mediterranean Region ◽  
Ecological Traits ◽  
Water Beetles

Evolutionary relationships ofHyphodiscus hymeniophilus(anamorphCatenulifera rhodogena) inferred from β-tubulin and nuclear ribosomal DNA sequences

2006 ◽  
Vol 84 (2) ◽  
pp. 243-253 ◽  
Author(s):  
Wendy A. Untereiner ◽  
Françoise A. Naveau ◽  
Jason Bachewich ◽  
Andrea Angus
Keyword(s):  
Phylogenetic Relationship ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Its Sequences ◽  
Nuclear Ribosomal Dna ◽  
Phialocephala Fortinii ◽  
Piptoporus Betulinus ◽  
Close Phylogenetic Relationship ◽  
Relationship Of ◽  
Β Tubulin

During an investigation of lignicolous ascomycetes from Luxembourg, we isolated a Phialophora -like species that produced striking red colonies. To confirm the identity of this fungus as Catenulifera rhodogena , we compared it with isolates of Catenulifera rhodogena and Hyphodiscus hymeniophilus on a variety of media. Portions of the β-tubulin gene and the nuclear ribosomal DNA cistron (internal transcribed spacers (ITS) and large subunit (LSU)) were sequenced to examine the relationship of isolates of Catenulifera rhodogena and Hyphodiscus hymeniophilus from different substrates and to test the hypothesis that Cadophora and Catenulifera are congeneric. The phylogenetic position of Catenulifera within the Ascomycota was investigated based on the analysis of the small-subunit (SSU) rDNA sequences. The isolates examined were indistinguishable micromorphologically and closely related phylogenetically. Three strains of Catenulifera rhodogena from bark or wood and one strain from Piptoporus betulinus formed a strongly supported clade in analyses of β-tubulin and ITS sequences. This clade did not encompass the ex-type isolates of Cistella rubescens and Scopulariopsis rhodogena or a second isolate of Catenulifera rhodogena from Piptoporus betulinus. Analysis of partial LSU sequences confirmed the close phylogenetic relationship of Catenulifera rhodogena and Hyphodiscus hymeniophilus but provided no evidence that the isolates could be grouped by substrate or that Catenulifera is synonymous with Cadophora. The position of Catenulifera within the Helotiales was not resolved based on the comparison of LSU and SSU sequences, but the isolate for which we obtained complete SSU sequence grouped with the root endophyte Phialocephala fortinii. Comparison of ITS sequences confirmed the close phylogenetic relationship of Hyphodiscus to members of the Dermateaceae and Hyaloscyphaceae.

RELATIONSHIP OF TAXA IN THE GENUS MEDICAGO AS REVEALED BY HYBRIDIZATION. VI. M. LACINIATA × M. SAUVAGEI

1972 ◽  
Vol 14 (4) ◽  
pp. 823-828 ◽  
Author(s):  
S. M. Singh ◽  
K. Lesins
Keyword(s):  
Seedling Mortality ◽  
Separate Species ◽  
Cytoplasmic Factor ◽  
Chlorophyll Deficiency ◽  
Normal Green ◽  
Leaf Character ◽  
Close Phylogenetic Relationship ◽  
Poor Seed ◽  
Relationship Of ◽  
Serrate Margin

Medicago laciniata (L) Mill. and M. sauvagei Nègre were intercrossed in both directions. The F1's of the cross M. sauvagei ♂ × M. laciniata ♀ were chlorophyll deficient, and F1's of the reciprocal cross were normal green, indicating cytoplasmic influence. In the F2 of chlorophyll deficient F1's, segregation for chlorophyll deficiency took place, revealing interaction of cytoplasmic factor/s with gene/s of M. laciniata. Some transmission of the cytoplasmic factor through pollen of M. sauvagei was indicated by somatic chlorophyll deficiency in sectors of a few leaves of F1's of M. laciniata ♂ × M. sauvagei ♀. The serrate margin leaf character of M. sauvagei and the apical coil spininess of M. laciniata were transmitted as recessives. Because of the poor seed set in F1's and high seedling mortality of F2's, the number of genes determining these characters is not certain. The two taxa are considered separate species because of low interfertility; their close phylogenetic relationship, however, is indicated by normal meiosis in F1's and by hybridization.

The close phylogenetic relationship of Nitrobacter and Rhodopseudomonas palustris

1982 ◽  
Vol 131 (3) ◽  
pp. 287-290 ◽  
Author(s):  
Elke Seewaldt ◽  
Karl-Heinz Schleifer ◽  
Eberhard Bock ◽  
Erko Stackebrandt
Keyword(s):  
Phylogenetic Relationship ◽  
Rhodopseudomonas Palustris ◽  
Close Phylogenetic Relationship ◽  
Relationship Of

scholarly journals Enhanced genome annotation strategy provides novel insights on the phylogeny of Flaviviridae

2019 ◽  
Author(s):  
Adriano de Bernardi Schneider ◽  
Denis Jacob Machado ◽  
Daniel Janies
Keyword(s):  
Phylogenetic Relationship ◽  
Soybean Cyst Nematode ◽  
Phylogenetic Analyses ◽  
Optimality Criteria ◽  
Entire Family ◽  
Close Phylogenetic Relationship ◽  
The Family ◽  
Relationship Of ◽  
Reference Genomes ◽  
Annotation Strategy

The ongoing and severe public health threat of viruses of the family Flaviviridae, including dengue, hepatitis C, West Nile, yellow fever, and zika, demand a greater understanding of how these viruses evolve, emerge and spread in order to respond. Central to this understanding is an updated phylogeny of the entire family. Unfortunately, most cladograms of Flaviviridae focus on specific lineages, ignore outgroups, and rely on midpoint rooting, hampering their ability to test ingroup monophyly and estimate ingroup relationships. This problem is partly due to the lack of fully annotated genomes of Flaviviridae, which has genera with slightly different gene content, hindering genome analysis without partitioning. To tackle these problems, we developed an annotation pipeline for Flaviviridae that uses a combination of ab initio and homology-based strategies. The pipeline recovered 100% of the genes in reference genomes and annotated over 97% of the expected genes in the remaining non curated sequences. We further demonstrate that the combined analysis of genomes of all genera of Flaviviridae (Flavivirus, Hepacivirus, Pegivirus, and Pestivirus), as made possible by our annotation strategy, enhances the phylogenetic analyses of these viruses for all optimality criteria that we tested (parsimony, maximum likelihood, and posterior probability). The final tree sheds light on the phylogenetic relationship of viruses that are divergent from most Flaviviridae and should be reclassified, especially the soybean cyst nematode virus 5 (SbCNV-5) and the Tamana bat virus. We also corroborate the close phylogenetic relationship of dengue and zika viruses with an unprecedented degree of support.

scholarly journals Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand’s high ultraviolet B radiation environment

BMC Genomics ◽  
2019 ◽  
Vol 20 (1) ◽  
Author(s):  
Yanni Dong ◽  
Saurabh Gupta ◽  
Rixta Sievers ◽  
Jason J. Wargent ◽  
David Wheeler ◽  
...  
Keyword(s):  
Draft Genome ◽  
Single Copy ◽  
Ultraviolet B ◽  
Radiation Environment ◽  
Perennial Herb ◽  
Close Relative ◽  
Close Phylogenetic Relationship ◽  
Genome Draft ◽  
Relationship Of ◽  
Boechera Stricta

Abstract Background Pachycladon cheesemanii is a close relative of Arabidopsis thaliana and is an allotetraploid perennial herb which is widespread in the South Island of New Zealand. It grows at altitudes of up to 1000 m where it is subject to relatively high levels of ultraviolet (UV)-B radiation. To gain first insights into how Pachycladon copes with UV-B stress, we sequenced its genome and compared the UV-B tolerance of two Pachycladon accessions with those of two A. thaliana accessions from different altitudes. Results A high-quality draft genome of P. cheesemanii was assembled with a high percentage of conserved single-copy plant orthologs. Synteny analysis with genomes from other species of the Brassicaceae family found a close phylogenetic relationship of P. cheesemanii with Boechera stricta from Brassicaceae lineage I. While UV-B radiation caused a greater growth reduction in the A. thaliana accessions than in the P. cheesemanii accessions, growth was not reduced in one P. cheesemanii accession. The homologues of A. thaliana UV-B radiation response genes were duplicated in P. cheesemanii, and an expression analysis of those genes indicated that the tolerance mechanism in P. cheesemanii appears to differ from that in A. thaliana. Conclusion Although the P. cheesemanii genome shows close similarity with that of A. thaliana, it appears to have evolved novel strategies allowing the plant to tolerate relatively high UV-B radiation.

Redescription of the genus Curiades Pascoe 1880 (Coleoptera: Curculionidae: Entiminae: Naupactini), a potential mimic of Mutillidae from Brazil

Zootaxa ◽  
2012 ◽  
Vol 3570 (1) ◽  
pp. 82 ◽  
Author(s):  
M. GUADALUPE DEL RÍO ◽  
ANALIA A. LANTERI
Keyword(s):  
Phylogenetic Relationship ◽  
Type Species ◽  
Morphological Characters ◽  
Color Pattern ◽  
Monotypic Genus ◽  
Present Contribution ◽  
Diagnostic Features ◽  
Line Drawings ◽  
Close Phylogenetic Relationship ◽  
Relationship Of

The monotypic genus Curiades Pascoe 1880 (Curculionidae: Entiminae: Naupactini) is redescribed based on the type species C. boisduvali (Boheman 1840), endemic to Río de Janeiro, Brazil. Curiades boisduvali shows a characteristic color pattern and vestiture composed of long erect setae that resembles species of Dasymutilla Ashmead 1899, a genus of Mutillidae (Hymenoptera) whose wingless females have aposematic colors and painful stings. The similarities between the wasp (model) and the weevil (mimic) suggest a case of Batesian mimicry. The morphological characters of the rostrum and antennae justify a close phylogenetic relationship of Curiades and Platyomus Sahlberg 1823, even though based on its hairy vestiture the former is superficially more similar to Trichaptus Pascoe 1880, another Brazilian naupactine mimic of mutillid wasps. The present contribution includes a redescription of Curiades and its only known species, accompanied by habitus photographs, line drawings of genitalia and other diagnostic features.

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