scholarly journals Structural and Magnetic Studies on Nickel(II) and Cobalt(II) Complexes with Polychlorinated Diphenyl(4-pyridyl)methyl Radical Ligands

Molecules ◽  
2021 ◽  
Vol 26 (18) ◽  
pp. 5596
Author(s):  
Ryota Matsuoka ◽  
Tatsuhiro Yoshimoto ◽  
Yasutaka Kitagawa ◽  
Tetsuro Kusamoto
Keyword(s):  
Metal Ions ◽  
Density Functional ◽  
Density Functional Theory Calculations ◽  
Building Blocks ◽  
Magnetic Interactions ◽  
Organic Radical ◽  
Methyl Radical ◽  
Magnetic Studies ◽  
Orthogonal Relationship ◽  
Magnetic Metal

New magnetic metal complexes with organic radical ligands, [M(hfac)2(PyBTM)2] (M = NiII, CoII; hfac = hexafluoroacetylacetonato, PyBTM = (3,5-dichloro-4-pyridyl)bis(2,4,6-trichlorophenyl)methyl radical), were prepared and their crystal structures, magnetic properties, and electronic structures were investigated. Metal ions in [M(hfac)2(PyBTM)2] constructed distorted octahedral coordination geometry, where the two PyBTM molecules ligated in the trans configuration. Magnetic investigation using a SQUID magnetometer revealed that χT increased with decreasing temperature from 300 K in the two complexes, indicating an efficient intramolecular ferromagnetic exchange interaction taking place between the spins on PyBTM and M with J/kB of 21.8 K and 11.8 K for [NiII(hfac)2(PyBTM)2] and [CoII(hfac)2(PyBTM)2]. The intramolecular ferromagnetic couplings in the two complexes could be explained by density functional theory calculations, and would be attributed to a nearly orthogonal relationship between the spin orbitals on PyBTM and the metal ions. These results demonstrate that pyridyl-containing triarylmethyl radicals are key building blocks for magnetic molecular materials with controllable/predictable magnetic interactions.

scholarly journals Microhydration of ionized building blocks of DNA/RNA: infrared spectra of pyrimidine$$^{+}$$-$$(\hbox {H}_{2}\hbox {O})_{\text {1-3}}$$ clusters

2021 ◽  
Vol 75 (3) ◽  
Author(s):  
Kuntal Chatterjee ◽  
Otto Dopfer
Keyword(s):  
Density Functional ◽  
Size Range ◽  
Density Functional Theory Calculations ◽  
Building Blocks ◽  
Ion Solvation ◽  
Structure Stability ◽  
Consistent Picture ◽  
Three Body ◽  
And Function ◽  
Stable Structures

Abstract Hydration of biomolecules is an important physiological process that governs their structure, stability, and function. Herein, we probe the microhydration structure of cationic pyrimidine (Pym), a common building block of DNA/RNA bases, by infrared photodissociation spectroscopy (IRPD) of mass-selected microhydrated clusters, $$\hbox {Pym}^{+}$$ Pym + -$$\hbox {W}_{n}$$ W n (W=$$\hbox {H}_{2}\hbox {O}$$ H 2 O ), in the size range $$n=1$$ n = 1 –3. The IRPD spectra recorded in the OH and CH stretch range are sensitive to the evolution of the hydration network. Analysis with density functional theory calculations at the dispersion-corrected B3LYP-D3/aug-cc-pVTZ level provides a consistent picture of the most stable structures and their energetic and vibrational properties. The global minima of $$\hbox {Pym}^{+}$$ Pym + -$$\hbox {W}_{n}$$ W n predicted by the calculations are characterized by H-bonded structures, in which the H-bonded $$\hbox {W}_{n}$$ W n solvent cluster is attached to the most acidic C4–H proton of $$\hbox {Pym}^{+}$$ Pym + via a single CH...O ionic H-bond. These isomers are identified as predominant carrier of the IRPD spectra, although less stable local minima provide minor contributions. In general, the formation of the H-bonded solvent network (exterior ion solvation) is energetically preferred to less stable structures with interior ion solvation because of cooperative nonadditive three-body polarization effects. Progressive hydration activates the C4–H bond, along with increasing charge transfer from $$\hbox {Pym}^{+}$$ Pym + to $$\hbox {W}_{n}$$ W n , although no proton transfer is observed in the size range $$n\leqslant $$ n ⩽ 3. The solvation with protic, dipolar, and hydrophilic W ligands is qualitative different from solvation with aprotic, quadrupolar, and hydrophobic $$\hbox {N}_{2}$$ N 2 ligands, which strongly prefer interior ion solvation by $$\uppi $$ π stacking interactions. Comparison of $$\hbox {Pym}^{+}$$ Pym + -W with Pym-W and $$\hbox {H}^{+}$$ H + Pym-W reveals the drastic effect of ionization and protonation on the Pym...W interaction. Graphic Abstract

scholarly journals Spectroscopic identification of fragment ions of DNA/RNA building blocks: the case of pyrimidine

2020 ◽  
Vol 22 (30) ◽  
pp. 17275-17290
Author(s):  
Kuntal Chatterjee ◽  
Otto Dopfer
Keyword(s):  
Density Functional Theory ◽  
Infrared Spectroscopy ◽  
Density Functional ◽  
Density Functional Theory Calculations ◽  
Building Blocks ◽  
Functional Theory ◽  
Fragment Ions ◽  
Sequential Loss ◽  
Spectroscopic Identification

The structure of the predominant fragments of the fundamental pyrimidine cation arising from sequential loss of HCN are identified by infrared spectroscopy of tagged ions and dispersion-corrected density functional theory calculations.

scholarly journals Microhydration of protonated biomolecular building blocks: protonated pyrimidine

2020 ◽  
Vol 22 (23) ◽  
pp. 13092-13107
Author(s):  
Kuntal Chatterjee ◽  
Otto Dopfer
Keyword(s):  
Density Functional Theory ◽  
Infrared Spectroscopy ◽  
Density Functional ◽  
Density Functional Theory Calculations ◽  
Building Blocks ◽  
Protonation Site ◽  
Functional Theory

The protonation site and evolution of the hydration network in microsolvated protonated pyrimidine clusters, H+Pym–(H2O)n with n = 1–4, has been explored by infrared spectroscopy and density functional theory calculations.

scholarly journals Physicochemical Insight into Coordination Systems Obtained from Copper(II) Bromoacetate and 1,10-Phenanthroline

Molecules ◽  
2020 ◽  
Vol 25 (22) ◽  
pp. 5324
Author(s):  
Ewelina Krejner ◽  
Tomasz Sierański ◽  
Marcin Świątkowski ◽  
Marta Bogdan ◽  
Rafał Kruszyński
Keyword(s):  
Density Functional Theory ◽  
Density Functional ◽  
Density Functional Theory Calculations ◽  
Building Blocks ◽  
Radiation Absorption ◽  
Ir Absorption ◽  
Bromoacetic Acid ◽  
Functional Theory ◽  
Hirshfeld Analysis ◽  
Coordination Systems

Two different coordination compounds of copper were synthesized from the same building blocks (1,10-phenanthroline, bromoacetate anions, and copper cations). The synthesis parameters were carefully designed and evaluated to allow the change of the resulting compounds molecular structure, i.e., formation of mononuclear (bromoacetato-O,O’)(bromoacetato-O)aqua(1,10-phenanthroline-N,N’)copper(II) and dinuclear (μ-bromido-1:2κ2)bis(μ-bromoacetato-1κO,2κO’)bis(1,10-phenanthroline-N,N’)dicopper(II) bromoacetate bromoacetic acid solvate. The crystal, molecular and supramolecular structures of the studied compounds were determined and evaluated in Hirshfeld analysis. The UV-Vis-IR absorption and thermal properties were studied and discussed. For the explicit determination of the influence of compounds structure on radiation absorption in UV-Vis range, density functional theory and time-dependent density functional theory calculations were performed.

scholarly journals Development and Testing of an All-Atom Force Field for Diketopyrrolopyrrole Polymers with Conjugated Substituents

2020 ◽  
Author(s):  
Vivek Sundaram ◽  
Alexey V. Lyulin ◽  
Björn Baumeier
Keyword(s):  
Force Field ◽  
Density Functional ◽  
Density Functional Theory Calculations ◽  
Building Blocks ◽  
Variable Number ◽  
Polymer Chains ◽  
Relaxation Processes ◽  
Polymer Backbone ◽  
Dynamics Simulations ◽  
The Individual

We develop an all-atom force field for a series of diketopyrrolopyrrole polymers with two aromatic pyridine substituents and variable number of pi-conjugated thiophene units in the backbone, used as donor material in organic photovoltaic devices. Available intra-fragment parameterizations of the individual fragment building blocks are combined with inter-fragment bonded and non-bonded parameters explicitly derived from density-functional theory calculations. To validate the force field we perform classical molecular dynamics simulations of single polymer chains with 1, 2, and 3 thiophenes in good and bad solvents, and of melts. We observe the expected dependence of the chain conformation on the solvent quality, with the chain collapsing in water, and swelling in chloroform. The glass transition temperature for the polymer melts is found to be in the range of 340K to 370K. Analysis of the mobility of the conjugated segments in the polymer backbone reveals two relaxation processes: a fast one with a characteristic time at room temperature on the order of 10ps associated with nearly harmonic vibrations and a slow one on the order of 100 associated with temperature activated cis-trans transitions.

scholarly journals Direct light–induced spin transfer between different elements in a spintronic Heusler material via femtosecond laser excitation

2020 ◽  
Vol 6 (3) ◽  
pp. eaaz1100 ◽  
Author(s):  
Phoebe Tengdin ◽  
Christian Gentry ◽  
Adam Blonsky ◽  
Dmitriy Zusin ◽  
Michael Gerrity ◽  
...  
Keyword(s):  
Femtosecond Laser ◽  
Time Scales ◽  
Density Functional ◽  
Laser Excitation ◽  
High Harmonic ◽  
Density Functional Theory Calculations ◽  
Spin Transfer ◽  
Magnetic Interactions ◽  
Magnetic Sublattice ◽  
Wide Range

Heusler compounds are exciting materials for future spintronics applications because they display a wide range of tunable electronic and magnetic interactions. Here, we use a femtosecond laser to directly transfer spin polarization from one element to another in a half-metallic Heusler material, Co2MnGe. This spin transfer initiates as soon as light is incident on the material, demonstrating spatial transfer of angular momentum between neighboring atomic sites on time scales < 10 fs. Using ultrafast high harmonic pulses to simultaneously and independently probe the magnetic state of two elements during laser excitation, we find that the magnetization of Co is enhanced, while that of Mn rapidly quenches. Density functional theory calculations show that the optical excitation directly transfers spin from one magnetic sublattice to another through preferred spin-polarized excitation pathways. This direct manipulation of spins via light provides a path toward spintronic devices that can operate on few-femtosecond or faster time scales.

scholarly journals Correlation effects in the ground state of Ni-(Co)-Mn-Sn Heusler compounds

MRS Advances ◽  
2019 ◽  
Vol 4 (08) ◽  
pp. 441-446 ◽  
Author(s):  
Bernardo Barbiellini ◽  
Aki Pulkkinen ◽  
Johannes Nokelainen ◽  
Vasiliy Buchelnikov ◽  
Vladimir Sokolovskiy ◽  
...  
Keyword(s):  
Density Functional ◽  
Density Functional Theory Calculations ◽  
Equilibrium Structure ◽  
Phase Correlation ◽  
Magnetic Interactions ◽  
Magnetic Impurities ◽  
Correlation Effects ◽  
Generalized Gradient ◽  
Co Doping

AbstractWe present density functional theory calculations to study the interplay between magnetic and structural properties in Ni-Co-Mn-Sn. The relative stability of austenite (cubic) and martensite (tetragonal) phases depends critically on the magnetic interactions between Mn atoms. While the standard generalized gradient approximation (GGA) stabilizes the latter phase, correlation effects beyond GGA tend to suppress this effect. Mn atoms treated as magnetic impurities can explain our results, where a delicate balance between magnetic interactions mediated by Ni d and Sn p orbitals determines the equilibrium structure of the crystal. Finally, we discuss the role of Co doping in stabilizing ferromagnetic austenite phases.

scholarly journals Expedient synthesis of E-hydrazone esters and 1H-indazole scaffolds through heterogeneous single-atom platinum catalysis

2019 ◽  
Vol 5 (12) ◽  
pp. eaay1537 ◽  
Author(s):  
Cuibo Liu ◽  
Zhongxin Chen ◽  
Huan Yan ◽  
Shibo Xi ◽  
Kah Meng Yam ◽  
...  
Keyword(s):  
Density Functional ◽  
Stereoselective Synthesis ◽  
Density Functional Theory Calculations ◽  
Building Blocks ◽  
Hydrogenation Reaction ◽  
Biologically Active ◽  
Single Atom ◽  
One Pot ◽  
Platinum Catalysis ◽  
Scalable Synthesis

Unprotected E-hydrazone esters are prized building blocks for the preparation of 1H-indazoles and countless other N-containing biologically active molecules. Despite previous advances, efficient and stereoselective synthesis of these compounds remains nontrivial. Here, we show that Pt single atoms anchored on defect-rich CeO2 nanorods (Pt1/CeO2), in conjunction with the alcoholysis of ammonia borane, promotes exceptionally E-selective hydrogenation of α-diazoesters to afford a wide assortment of N-H hydrazone esters with an overall turnover frequency of up to 566 hours−1 upon reaction completion. The α-diazoester substrates could be generated in situ from readily available carboxylic esters in one-pot hydrogenation reaction. Utility is demonstrated through concise, scalable synthesis of 1H-indazole–derived pharmaceuticals and their 15N-labeled analogs. The present protocol highlights a key mechanistic nuance wherein simultaneous coordination of a Pt site with the diazo N═N and ester carbonyl motifs plays a central role in controlling stereoselectivity, which is supported by density functional theory calculations.

scholarly journals Pt(dithiolene)-Based Colorimetric Chemosensors for Multiple Metal-Ion Sensing

2021 ◽  
Vol 13 (15) ◽  
pp. 8160
Author(s):  
Heawon Son ◽  
Seohyeon Jang ◽  
Gayoung Lim ◽  
Taeyong Kim ◽  
Inho Nam ◽  
...  
Keyword(s):  
Transition Metal ◽  
Metal Ions ◽  
Metal Ion ◽  
Density Functional ◽  
Low Cost ◽  
Density Functional Theory Calculations ◽  
Transition Metal Ions ◽  
Field Analysis ◽  
Ion Sensing ◽  
Metal Ion Sensing

Colorimetric chemosensors are widely employed for in-field analysis to detect transition metal ions in real-time with the naked eye. Colorimetric chemosensors have attracted considerable attention because they can conveniently provide quantitative and qualitative information at a low cost. However, the development of colorimetric chemosensors for multiple-ion sensing where metal cations coexist has been limited. For this reason, we developed a new type of transition metal ion sensing material by selectively replacing functional groups on (diphosphine)Pt(dmit) molecules. The terminal groups of the diphosphine ligand were successfully substituted by the cyclohexyl groups, increasing the electron density of the thione moiety. Due to the electron donation ability of the cyclohexyl terminal groups, the proposed chemosensing material was able to selectively detect the mixture of Hg2+, Cu2+, and Ag+ in the presence of many types of interfering cations. To gain insight into the binding mechanisms between the metal ions and the developed (dchpe)Pt(dmit) molecule, density functional theory calculations were also performed.

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