Abstract. Fifteen-year (1997–2012) time series of chlorophyll a (CHL) in the Baltic Sea, based on merged multisensor satellite data provided by the European projects Globcolour and ESA-OC-CCI were analysed. Several available CHL algorithms were sea-truthed against a large in situ CHL dataset consisting of data by Seadatanet, HELCOM and NOAA. Matchups were calculated for three separate areas (1) Skagerrak and Kattegat, (2) Baltic Proper plus gulfs of Riga and Finland, called here "Central Baltic", (3) Gulf of Bothnia, and for the three areas as a whole. Statistics showed low linearity. The OC4v6 algorithm (R2 = 0.46, BIAS = +60 %, RMS = 79 % for the whole dataset) was linearly transformed by using the best linear fit (OC4corr). By construction, the bias was corrected, but RMS was increased instead. Despite this shortcoming, we demonstrated that errors between OC4corr and in situ data were log-normally distributed and centred at zero. Consequently, unbiased estimators of the horizontally-averaged CHL could be obtained, the error of which tends to zero when a large amount of pixels is averaged. From the basin-wide time series, the climatology and the annual anomalies were separated. The climatologies revealed completely different CHL dynamics among regions: in Skagerrak and Kattegat, CHL strongly peaks in late winter, with a minimum in summer and a secondary peak in spring. In the Central Baltic, CHL follows a dynamics of a spring CHL peak, followed by a much stronger summer bloom, with decreasing CHL towards winter. The Gulf of Bothnia shows a similar CHL dynamics as the central Baltic, although the summer bloom is absent. Across years, CHL showed great variability. Supported by auxiliary satellite sea-surface temperature (SST) data, we found that phytoplankton growth was inhibited in the central Baltic Sea in the years of colder summers or when the SST happened to increase later in the season. Extremely high CHL in spring 2008 was detected and linked to an exceptionally warm preceding winter. Sharp SST changes were found to induce CHL changes in the same direction. This phenomenon was appreciated best by overlaying the time series of the CHL and SST anomalies.