scholarly journals Faculty Opinions recommendation of Bacterial communities in women with bacterial vaginosis: high resolution phylogenetic analyses reveal relationships of microbiota to clinical criteria.

Author(s):  
Helen Weiss ◽  
Suzanna Francis
PLoS ONE ◽  
2012 ◽  
Vol 7 (6) ◽  
pp. e37818 ◽  
Author(s):  
Sujatha Srinivasan ◽  
Noah G. Hoffman ◽  
Martin T. Morgan ◽  
Frederick A. Matsen ◽  
Tina L. Fiedler ◽  
...  

2018 ◽  
Author(s):  
Tommi Mäklin ◽  
Teemu Kallonen ◽  
Sophia David ◽  
Christine J. Boinett ◽  
Ben Pascoe ◽  
...  

AbstractDetermining the composition of bacterial communities beyond the level of a genus or species is challenging because of the considerable overlap between genomes representing close relatives. Here, we present the mSWEEP method for identifying and estimating the relative abundances of bacterial lineages from plate sweeps of enrichment cultures. mSWEEP leverages biologically grouped sequence assembly databases, applying probabilistic modelling, and provides controls for false positive results. Using sequencing data from major pathogens, we demonstrate significant improvements in lineage quantification and detection accuracy. Our method facilitates investigating cultures comprising mixtures of bacteria, and opens up a new field of plate sweep metagenomics.


2006 ◽  
Vol 2006 ◽  
pp. 1-6 ◽  
Author(s):  
Ida Vogel ◽  
Poul Thorsen ◽  
Bernard Jeune ◽  
Bo Jacobsson ◽  
Niels Ebbesen ◽  
...  

Objectives: the aim was to examine factors associated with acquisition and elimination of bacterial vaginosis in pregnancy.Methods: a group of 229 pregnant women were randomly selected from a population-based prospective cohort study of 2927. They were examined at enrollment (mean gestational weeks16w+0d) and again in mid-third trimester (mean gestational age32w+3d).Measures: BV (Amsel's clinical criteria), microbiological cultures of the genital tract and questionnaire data.Results: BV prevalence decreased from 17% in early second trimester to 14% in mid-third trimester due to a tenfold higher elimination rate (39%) than incidence rate (4%). Heavy smokers(>10/d)in early pregnancy were at increased risk(5.3 [1.1−25])for the acquisition of BV during pregnancy, as were women receiving public benefits(4.8 [1.0−22]), having a vaginal pH above4.5 (6.3 [1.4−29])or vaginal anaerobe bacteria(18 [2.7−122])at enrollment. A previous use of combined oral contraceptives was preventive for the acquisition of BV(0.2 [0.03−0.96]). Elimination of BV in pregnancy tended to be associated with a heavy growth ofLactobacillus (3.2 [0.8−13])at enrollment.Conclusions: acquisition of BV during pregnancy is rare and is associated with smoking, while the presence of anaerobe bacteria and a vaginal pH> 4.5are interpreted as steps on a gradual change towards BV. In the same way heavy growth ofLactobacillusspp in early pregnancy may be an indicator of women on the way to eliminate BV.


Microbiome ◽  
2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Marcela Zozaya ◽  
Michael J. Ferris ◽  
Julia D. Siren ◽  
Rebecca Lillis ◽  
Leann Myers ◽  
...  

1970 ◽  
Vol 4 (1) ◽  
pp. 24-27
Author(s):  
Shameem Akhter ◽  
Humayun Satter ◽  
Shirin Tarafder ◽  
Ruhul Amin Miah ◽  
Sohely Sharmin ◽  
...  

Bacterial vaginosis is the commonest cause of abnormal vaginal discharge in women of reproductive age and require laboratory test for diagnosis . A total 200 women aged 15-45 years with history of abnormal vaginal discharge were included as study population. Fifty women without such history of discharge were taken as healthy control. Three vaginal swab samples were taken from each case and control. These swab samples were subjected to test by conventional methods such as Amsel clinical criteria, Gram stain Nugent method, culture and by newly developed BV Blue test. The results of the BVBlue test were compared with these methods to find out the efficacy of BVBlue test. Rate of detection of bacterial vaginosis (BV) cases was 21.5% by Amsel clinical criteria, 21.0% by Gram stain Nugent method, 21.0% by culture and 22% by BVBlue test among the study population. When comparing with the conventional test and culture, BVBlue test was 100% sensitive and 98% specific. It is rapid, technically simple and is suitable for screening large number of patient in short time where laboratory facilities are not developed. Key words: Bacterial Vaginosis, BVBlue test, Nugent method, Abnormal vaginal discharge. DOI: http://dx.doi.org/10.3329/bjmm.v4i1.8465 BJMM 2011; 4(1): 24-27


2017 ◽  
Vol 66 (6) ◽  
pp. 30-43
Author(s):  
Veronika V. Nazarova ◽  
Elena V. Shipitsyna ◽  
Kira V. Shalepo ◽  
Alevtina M. Savicheva

Background. Bacterial vaginosis (BV) is disturbance of the vaginal microbiota, characterized by displacement of lactobacilli with anaerobic bacteria and capable of adversely affecting women’s reproductive health. In the development of BV, a wide spectrum of bacteria substantially differing in their properties is involved. Grouping vaginal bacterial communities into clusters, or types of microbiocenosis, might contribute to understanding of pathogenic mechanisms and elaboration of effective tools for diagnostics and therapy of the disease. Aim. Determination and comparative analysis of clusters of vaginal bacterial communities in norm and in BV. Materials and methods. Women of reproductive age were enrolled in the study. For the diagnosis of BV, the Nugent score was used. Vaginal swab samples from all women were analyzed with the test Femoflor-16, intended for evaluation of the vaginal microbiocenosis using multiplex quantitative real-time PCR. Two-step cluster analysis was applied for grouping bacterial communities. Differences between the clusters were evaluated using pairwise comparisons. Results. Of 280 women enrolled in the study, 172 had normal microflora, 27 – intermediate microflora, 81 – BV. In cluster analysis, 270 samples valid in PCR testing were included. All the vaginal bacterial communities were grouped into 4 clusters. Cluster 1 (n = 171) included cases when the vaginal microflora consisted mostly of lactobacilli. Cluster 2 (n = 11) encompassed cases of domination of aerobic microflora: Enterobacteriaceae, Streptococcus and Staphylococcus. Clusters 3 (n = 57) and 4 (n = 31) were connected with BV and included cases of prevailing of facultative anaerobes (Gardnerella vaginalis, Atopobium vaginae) and obligate anaerobes (Sneathia/Leptotrichia/Fusobacterium, Megasphaera/Veillonella/Dialister, Lachnobacterium/Clostridium), respectively. Nearly all cases of cluster 1 belonged to the category of normal microflora of the Nugent score. The majority of bacterial communities of cluster 2 matched intermediate microflora, cluster 3 – BV category with a score of 7 or 8, cluster 4 – BV category with a score of 9 or 10. The clusters differed significantly in vaginal рН, with the highest values observed for cluster 4. Conclusions. Vaginal bacterial communities are grouped into 4 main clusters, characterized by domination of lactobacilli, aerobes, facultative anaerobes or obligate anaerobes. The clusters belong to different categories of the Nugent score and differ significantly in vaginal pH.


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