scholarly journals Variasi Genetik Troides helena (Lepidoptera: Papilionidae) Berdasarkan Gen COI (Cytochrome C Oxydase I)

Jurnal MIPA ◽  
2015 ◽  
Vol 4 (2) ◽  
pp. 141
Author(s):  
Claudius F. Kairupan ◽  
Roni Koneri ◽  
Trina E. Tallei
Keyword(s):  
Genetic Variation ◽  
Cytochrome C ◽  
Cytochrome C Oxidase ◽  
Gene Sequence ◽  
Forest Conversion ◽  
Butterfly Species ◽  
Cytochrome C Oxidase I ◽  
Nucleotide Difference ◽  
Remote Locations ◽  
Gene Sequence Analysis

Kupu-kupu Troides helena (Kupu-kupu Raja) merupakan salah satu spesies langka yang dilindungi. Eksploitasi yang berlebihan, serta alih fungsi hutan menjadi ancaman bagi kehidupan kupu-kupu ini. Penelitian ini dilakukan untuk mengetahui variasi  pada gen cytochrome C oxidase I Troides helena yang diperoleh dari dua lokasi yang berbeda, yaitu Gunung Tumpa dan Gunung Dua-sudara. Analisis sekuens menunjukkan adanya perbedaan satu pasang basa nukleotida dari kedua spesimen tersebut.  Selain itu, variasi juga ditunjukan pada sampel yang diperoleh dari basis data GenBank dengan adanya perbedaan 7-8 pasang basa nukleotida dengan  spesimen pada penelitian ini. Hasil perhitungan jarak genetik menunjukkan bahwa meskipun secara geografis spesimen-spesimen uji ini berasal dari lokasi yang berjauhan, variasi genetik masih berada dalam kisaran variasi intraspesies.Troides helena (Common Birdwing) is listed as one of endangered and protected butterfly species. Excessive exploitation and forest conversion have become threat to the life of this butterfly. This study was conducted to determine the genetic variation of Troides helena obtained from Mt. Tumpa and Mt. Dua-sudara based on cytochrome C oxidase I gene. Sequence analysis shows one nucleotide difference between these two specimens. Moreover, genetic variation also has been shown by comparing these two specimen with other Troides helena obtained from database in GenBank. There are 7-8 nucleotides differences among tested specimens. The result of genetic distance calculations indicates that although geographically these test specimens derived from remote locations, the genetic variation is still within the range of intraspecific variation.

scholarly journals Suspected autochthonous Thelazia callipaeda infection in a dog in northern Germany

2020 ◽  
Vol 119 (12) ◽  
pp. 4277-4280
Author(s):  
Sophia L. Lebedewa ◽  
Kevin Tkocz ◽  
Peter-Henning Clausen ◽  
Ard M. Nijhof
Keyword(s):  
Cytochrome C ◽  
Cytochrome C Oxidase ◽  
Gene Sequence ◽  
Morphological Identification ◽  
Cytochrome C Oxidase I ◽  
Thelazia Callipaeda ◽  
Northern Germany ◽  
Lower Saxony ◽  
Transmission Cycle ◽  
Local Transmission

AbstractA 12-year old Elo dog was presented with recurring symptoms of conjunctivitis in November 2019. A single whitish nematode was found upon inspection of the eye and identified as a Thelazia callipaeda male. The morphological identification of the eye worm was supported by analysis of a partial cytochrome c oxidase I (cox1) gene sequence. The dog lived in Lower Saxony, northwestern Germany, and had not visited regions known to be endemic for T. callipaeda. This suggests that a local transmission cycle of this zoonotic nematode may exist in Germany.

Agriotes proximus and A. lineatus (Coleoptera: Elateridae): a comparative study on the pheromone composition and cytochrome c oxidase subunit I gene sequence

Chemoecology ◽  
2011 ◽  
Vol 22 (1) ◽  
pp. 23-28 ◽  
Author(s):  
József Vuts ◽  
Till Tolasch ◽  
Lorenzo Furlan ◽  
Éva Bálintné Csonka ◽  
Tamás Felföldi ◽  
...  
Keyword(s):  
Cytochrome C ◽  
Comparative Study ◽  
Cytochrome C Oxidase ◽  
Gene Sequence ◽  
Oxidase Subunit ◽  
Pheromone Composition ◽  
I Gene

scholarly journals Occurrence and molecular identification of an invasive rice strain of fall armyworm Spodoptera frugiperda (Lepidoptera: Noctuidae) from Sindh, Pakistan, using mitochondrial cytochrome c oxidase I gene sequences

2021 ◽  
Author(s):  
Sumaira Yousaf ◽  
Abdul Rehman ◽  
Mariyam Masood ◽  
Kazam Ali ◽  
Nazia Suleman
Keyword(s):  
Cytochrome C ◽  
Cytochrome C Oxidase ◽  
Spodoptera Frugiperda ◽  
Fall Armyworm ◽  
Coi Gene ◽  
Invasive Pest ◽  
Mitochondrial Cytochrome ◽  
Cytochrome C Oxidase I ◽  
Gene Sequences ◽  
Rice Strain

AbstractThe fall armyworm (FAW), an invasive pest of maize, is an emerging threat in Southern Asia after America and Europe. Recently, this notorious pest has also been found in different areas of Pakistan. To assess its presence in Pakistan, a survey was carried out in the provinces of Punjab, Sindh, and Khyber Pakhtunkhwa during May–October 2019. We observed the highest incidence of FAW in Sindh with maximum impact in districts Tando-Allahyar and Hyderabad. These samples were identified as Spodoptera frugiperda on the morphological and taxonomical bases. However, morphological identification of this pest is very difficult at early larval instars. Here, we use the mitochondrial cytochrome c oxidase I (COI) gene region for the precise identification of larva of this invasive pest at species level. Two different regions of COI gene (COI-5′ and COI-3′) were used as molecular markers for the identification of this species. DNA sequence similarity searches of the obtained COI gene sequences (NCBI GenBank Accession Nos. MW241537, MW241538, MW349515, MW349516, MW349493 and MW349494) revealed that genetically it is more than 99% identical to S. frugiperda. The phylogenetic analysis indicated it as the rice-strain (R-strain). Both 3′- and 5′-fragment tree topologies showed that the collected samples of the FAW species belong to the R-strain. To the best of our knowledge, this is the first report providing molecular evidence for the existence of R-strain of S. frugiperda that was found feeding on maize crop in Sindh, Pakistan, using COI gene sequences as a marker.

scholarly journals First Record of Mansonia dyari in the State of Morelos, Mexico, Based on Morphology and COI DNA Barcoding

2020 ◽  
Vol 36 (1) ◽  
pp. 33-36
Author(s):  
Luis F. Hernández-Guevara ◽  
Francisco J. Sánchez-Rámos ◽  
Rahuel J. Chan-Chable ◽  
Luis M. Hernández-Triana ◽  
Ma. Teresa Valdés-Perezgasga ◽  
...  
Keyword(s):  
Cytochrome C ◽  
Dna Barcoding ◽  
Cytochrome C Oxidase ◽  
Mosquito Species ◽  
First Record ◽  
Morphological Characters ◽  
The State ◽  
Historical Records ◽  
Cytochrome C Oxidase I ◽  
Medical Importance

ABSTRACT Collections of mosquitoes were conducted for the surveillance of species of medical importance in the state of Morelos, Mexico, in June 2017. Species collected included Mansonia (Mansonia) dyari, which was identified using morphological characters and cytochrome c oxidase I DNA barcoding. Although 3 species of genus Mansonia have been previously reported in Mexico, this is the 1st confirmed record of Ma. dyari in Morelos State, where no Mansonia species had been recorded. Historical records of Ma. dyari and Ma. indubitans in Mexico were reviewed. Therefore, this record increases the number of mosquito species occurring in Morelos to 46. The specimens collected in this study were deposited in the Culicidae collection of the Universidad Autónoma Agraria Antonio Narro, Unidad Laguna.

scholarly journals Variasi Genetik Plutella xylostella L. (Lepidoptera: Plutellidae) berdasarkan Gen Cytochrome C Oxidase I

Jurnal MIPA ◽  
2019 ◽  
Vol 8 (1) ◽  
pp. 1
Author(s):  
Claudius F. Kairupan ◽  
Jantje Pelealu ◽  
Juliet M.E. Mamahit
Keyword(s):  
Cytochrome C ◽  
Cytochrome C Oxidase ◽  
Plutella Xylostella ◽  
Coi Gene ◽  
Cytochrome C Oxidase I ◽  
Base Pairs ◽  
Insecticide Application ◽  
Nucleotide Base ◽  
North Sulawesi ◽  
Relationship Of

Daerah Modoinding dan Tomohon di Sulawesi Utara, dikenal sebagai  daerah penghasil sayuran kubis di Indonesia. Sayuran kubis memiliki hama utama yaitu Plutella xylostella. Penyebab serangga ini dapat bertahan hingga saat ini karena adanya sifat resistensi akibat pemberian insektisida yang berlebihan. Penelitian ini dilakukan untuk menganalisis variasi pada gen cytochrome C oxidase IPlutella xylostella yang diperoleh dari dua lokasi yang berbeda, yaitu Modoinding dan Tomohon. Analisis sekuens menunjukkan adanya perbedaan pasang basa nukleotida dari sampel yang berbeda lokasi. Selain itu, variasi juga ditunjukkan pada sampel yang diperoleh dari basis data GenBank dengan adanya perbedaan 1-14 pasang basa nukleotida dengan spesimen pada penelitian ini. Hubungan kekerabatan gen COI P. xylostella keseluruhan sampel tergolong dalam variasi intraspesies dengan nilai jarak genetik berkisar antara 0-0,022 (0-2,20%).Modoinding and Tomohon areas in North Sulawesi, are known as regions in Indonesia that produce a cabbage. The main pest of cabbage, Plutella xylostella. This insect can survive due to its resistance resulted from prolonged insecticide application. This study aims to analyze genetic variation of COI genes in P. xylostella from Modoinding and Tomohon areas. Sequence analysis showed there were differences in nucleotide base pairs between these locations. In addition, variations were also shown in samples obtained from the GenBank database with differences in 1-14 nucleotide base pairs with specimens in this study. The genetic relationship of P. xylostella COI gene in all samples was classified as intraspecific variation with genetic distance values ranging from 0-0,022 (0-2,20%).D aerah Modoinding dan Tomohon di Sulawesi Utara, dikenal sebagaidaerah penghasil sayuran kubis di Indonesia. Sayuran kubis memilikihama utama yaitu Plutella xylostella. Penyebab serangga ini dapatbertahan hingga saat ini karena adanya sifat resistensi akibat pemberianinsektisida yang berlebihan. Penelitian ini dilakukan untuk menganalisisvariasi pada gen cytochrome C oxidase I Plutella xylostella yang diperolehdari dua lokasi yang berbeda, yaitu Modoinding dan Tomohon. Analisissekuens menunjukkan adanya perbedaan pasang basa nukleotida darisampel yang berbeda lokasi. Selain itu, variasi juga ditunjukkan padasampel yang diperoleh dari basis data GenBank dengan adanyaperbedaan 1-14 pasang basa nukleotida dengan spesimen padapenelitian ini. Hubungan kekerabatan gen COI P. xylostella keseluruhansampel tergolong dalam variasi intraspesies dengan nilai jarak genetikberkisar antara 0-0,022 (0-2,20%).

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