Non-parametric method for estimating the species richness of a nekton community during fall in the southern waters of Shandong Peninsula

2018 ◽  
Vol 25 (2) ◽  
pp. 436
Author(s):  
Xiuxia MOU ◽  
Binduo XU ◽  
Ying XUE ◽  
Yiping REN ◽  
Chongliang ZHANG
Phytotaxa ◽  
2014 ◽  
Vol 189 (1) ◽  
pp. 7 ◽  
Author(s):  
ROBERT LÜCKING ◽  
MARK K. JOHNSTON ◽  
ANDRÉ APTROOT ◽  
EKAPHAN KRAICHAK ◽  
JAMES C. LENDEMER ◽  
...  

Recent studies of the global diversity of the lichenized fungal family Graphidaceae suggest that there are a large number of species remaining to be discovered. No less than 640 species have been described since 2002, including 175 new species introduced in a collaborative global effort in a single issue in this journal. These findings suggest that the largest family of tropical crustose lichens may have an even higher number of species than Parmeliaceae. To estimate whether the discovery of 175 new species is a significant step forward in cataloguing extant diversity in this family, we employed a parametric method to predict global species richness of Graphidaceae using a GIS-based grid map approach. The model employs linear regression between observed species richness and sample score and vegetation composition per grid to predict individual grid species richness, and interpolation of species grid distributions to predict global species richness. We also applied a non-parametric species-area curve approach and non-parametric species richness estimators (Chao, Jackknife, Bootstrap) to compare the results from the different methods. Our approach resulted in a prediction of 4,330 species of Graphidaceae, including approximately 3,500 (sub-)tropical species in the core subfamilies Fissurinoideae, Graphidoideae, Redonographoideae, plus 125 species restricted to extratropical regions (outside the zone between 30° northern and 30° southern latitude) and 700 species in subfamily Gomphilloideae. Currently, nearly 2,500 species are known in the family, including species not yet formally described. Thus, our model suggests that even after describing 175 species in this issue and with another approximately 140 awaiting publication, the number of species still to be discovered and described is more than 1,800, and much work remains to be done to close this substantial gap. Based on our approach, we predict that most of this undiscovered diversity is to be found in Mexico, the northern Andean region, the eastern Amazon and central and southern Brazil, tropical West Africa, continental Southeast Asia, Indonesia, and Papua New Guinea.


Mathematics ◽  
2021 ◽  
Vol 9 (11) ◽  
pp. 1169
Author(s):  
Juan Bógalo ◽  
Pilar Poncela ◽  
Eva Senra

Real-time monitoring of the economy is based on activity indicators that show regular patterns such as trends, seasonality and business cycles. However, parametric and non-parametric methods for signal extraction produce revisions at the end of the sample, and the arrival of new data makes it difficult to assess the state of the economy. In this paper, we compare two signal extraction procedures: Circulant Singular Spectral Analysis, CiSSA, a non-parametric technique in which we can extract components associated with desired frequencies, and a parametric method based on ARIMA modelling. Through a set of simulations, we show that the magnitude of the revisions produced by CiSSA converges to zero quicker, and it is smaller than that of the alternative procedure.


Forecasting ◽  
2020 ◽  
Vol 3 (1) ◽  
pp. 1-16
Author(s):  
Hassan Hamie ◽  
Anis Hoayek ◽  
Hans Auer

The question of whether the liberalization of the gas industry has led to less concentrated markets has attracted much interest among the scientific community. Classical mathematical regression tools, statistical tests, and optimization equilibrium problems, more precisely non-linear complementarity problems, were used to model European gas markets and their effect on prices. In this research, the parametric and nonparametric game theory methods are employed to study the effect of the market concentration on gas prices. The parametric method takes into account the classical Cournot equilibrium test, with assumptions on cost and demand functions. However, the non-parametric method does not make any prior assumptions, a factor that allows greater freedom in modeling. The results of the parametric method demonstrate that the gas suppliers’ behavior in Austria and The Netherlands gas markets follows the Nash–Cournot equilibrium, where companies act rationally to maximize their payoffs. The non-parametric approach validates the fact that suppliers in both markets follow the same behavior even though one market is more liquid than the other. Interestingly, our findings also suggest that some of the gas suppliers maximize their ‘utility function’ not by only relying on profit, but also on some type of non-profit objective, and possibly collusive behavior.


2011 ◽  
Vol 5 (21) ◽  
pp. 8678-8685
Author(s):  
de Souza Lima Vitor ◽  
Carlos C B Soares de Mello Joatilde o ◽  
Angulo Meza Lidia

2017 ◽  
Vol 598 ◽  
pp. A125 ◽  
Author(s):  
S. Rezaei Kh. ◽  
C. A. L. Bailer-Jones ◽  
R. J. Hanson ◽  
M. Fouesneau

2020 ◽  
Author(s):  
Wei Wang ◽  
Kevin J. Liu

AbstractMotivationThe standard bootstrap method is used throughout science and engineering to perform general-purpose non-parametric resampling and re-estimation. Among the most widely cited and widely used such applications is the phylogenetic bootstrap method, which Felsenstein proposed in 1985 as a means to place statistical confidence intervals on an estimated phylogeny (or estimate “phylogenetic support”). A key simplifying assumption of the bootstrap method is that input data are independent and identically distributed (i.i.d.). However, the i.i.d. assumption is an over-simplification for biomolecular sequence analysis, as Felsenstein noted. Special-purpose fully parametric or semi-parametric methods for phylogenetic support estimation have since been introduced, some of which are intended to address this concern.ResultsIn this study, we introduce a new sequence-aware non-parametric resampling technique, which we refer to as RAWR (“RAndom Walk Resampling”). RAWR consists of random walks that synthesize and extend the standard bootstrap method and the “mirrored inputs” idea of Landan and Graur. We apply RAWR to the task of phylogenetic support estimation. RAWR’s performance is compared to the state of the art using synthetic and empirical data that span a range of dataset sizes and evolutionary divergence. We show that RAWR support estimates offer comparable or typically superior type I and type II error compared to phylogenetic bootstrap support as well as GUIDANCE2, a state-of-the-art purpose-built fully parametric method. Additional simulation study experiments help to clarify practical considerations regarding RAWR support estimation. We conclude with thoughts on future research directions and the untapped potential for sequence-aware non-parametric resampling and re-estimation.AvailabilityData and software are publicly available under open-source software and open data licenses at: https://gitlab.msu.edu/liulab/[email protected]


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