High Performance Storage for Big Data Analytics and Visualization

2018 ◽  
pp. 254-275
Author(s):  
Armando Fandango ◽  
William Rivera
Keyword(s):  
Big Data ◽  
High Speed ◽  
High Performance ◽  
File System ◽  
Predictive Analytics ◽  
Big Data Analytics ◽  
File Systems ◽  
Distributed Applications ◽  
System Level ◽  
File Formats

Scientific Big Data being gathered at exascale needs to be stored, retrieved and manipulated. The storage stack for scientific Big Data includes a file system at the system level for physical organization of the data, and a file format and input/output (I/O) system at the application level for logical organization of the data; both of them of high-performance variety for exascale. The high-performance file system is designed with concurrent access, high-speed transmission and fault tolerance characteristics. High-performance file formats and I/O are designed to allow parallel and distributed applications with easy and fast access to Big Data. These specialized file formats make it easier to store and access Big Data for scientific visualization and predictive analytics. This chapter provides a brief review of the characteristics of high-performance file systems such as Lustre and GPFS, and high-performance file formats such as HDF5, NetCDF, MPI-IO, and HDFS.

Octopus + : An RDMA-Enabled Distributed Persistent Memory File System

2021 ◽  
Vol 17 (3) ◽  
pp. 1-25
Author(s):  
Bohong Zhu ◽  
Youmin Chen ◽  
Qing Wang ◽  
Youyou Lu ◽  
Jiwu Shu
Keyword(s):  
High Speed ◽  
High Performance ◽  
File System ◽  
Direct Memory Access ◽  
File Systems ◽  
Distributed File Systems ◽  
Persistent Memory ◽  
Memory Modules ◽  
Non Volatile Memory ◽  
Volatile Memory

Non-volatile memory and remote direct memory access (RDMA) provide extremely high performance in storage and network hardware. However, existing distributed file systems strictly isolate file system and network layers, and the heavy layered software designs leave high-speed hardware under-exploited. In this article, we propose an RDMA-enabled distributed persistent memory file system, Octopus + , to redesign file system internal mechanisms by closely coupling non-volatile memory and RDMA features. For data operations, Octopus + directly accesses a shared persistent memory pool to reduce memory copying overhead, and actively fetches and pushes data all in clients to rebalance the load between the server and network. For metadata operations, Octopus + introduces self-identified remote procedure calls for immediate notification between file systems and networking, and an efficient distributed transaction mechanism for consistency. Octopus + is enabled with replication feature to provide better availability. Evaluations on Intel Optane DC Persistent Memory Modules show that Octopus + achieves nearly the raw bandwidth for large I/Os and orders of magnitude better performance than existing distributed file systems.

Big Data Analytics Framework for Real-Time Genome Analysis: A Comprehensive Approach

2019 ◽  
Vol 16 (8) ◽  
pp. 3419-3427
Author(s):  
Shishir K. Shandilya ◽  
S. Sountharrajan ◽  
Smita Shandilya ◽  
E. Suganya
Keyword(s):  
Big Data ◽  
Real Time ◽  
Genome Analysis ◽  
High Speed ◽  
High Performance ◽  
Big Data Analytics ◽  
Good Precision ◽  
Entire Genome ◽  
Big Data Technologies ◽  
Sequencing Platforms

Big Data Technologies are well-accepted in the recent years in bio-medical and genome informatics. They are capable to process gigantic and heterogeneous genome information with good precision and recall. With the quick advancements in computation and storage technologies, the cost of acquiring and processing the genomic data has decreased significantly. The upcoming sequencing platforms will produce vast amount of data, which will imperatively require high-performance systems for on-demand analysis with time-bound efficiency. Recent bio-informatics tools are capable of utilizing the novel features of Hadoop in a more flexible way. In particular, big data technologies such as MapReduce and Hive are able to provide high-speed computational environment for the analysis of petabyte scale datasets. This has attracted the focus of bio-scientists to use the big data applications to automate the entire genome analysis. The proposed framework is designed over MapReduce and Java on extended Hadoop platform to achieve the parallelism of Big Data Analysis. It will assist the bioinformatics community by providing a comprehensive solution for Descriptive, Comparative, Exploratory, Inferential, Predictive and Causal Analysis on Genome data. The proposed framework is user-friendly, fully-customizable, scalable and fit for comprehensive real-time genome analysis from data acquisition till predictive sequence analysis.

scholarly journals Modeling of distributed file System in big data storage by event- B

2018 ◽  
Vol 210 ◽  
pp. 04042
Author(s):  
Ammar Alhaj Ali ◽  
Pavel Varacha ◽  
Said Krayem ◽  
Roman Jasek ◽  
Petr Zacek ◽  
...  
Keyword(s):  
Big Data ◽  
Data Storage ◽  
High Performance ◽  
File System ◽  
Formal Method ◽  
File Systems ◽  
Distributed File System ◽  
Distributed File Systems ◽  
Data Systems ◽  
Big Data Systems

Nowadays, a wide set of systems and application, especially in high performance computing, depends on distributed environments to process and analyses huge amounts of data. As we know, the amount of data increases enormously, and the goal to provide and develop efficient, scalable and reliable storage solutions has become one of the major issue for scientific computing. The storage solution used by big data systems is Distributed File Systems (DFSs), where DFS is used to build a hierarchical and unified view of multiple file servers and shares on the network. In this paper we will offer Hadoop Distributed File System (HDFS) as DFS in big data systems and we will present an Event-B as formal method that can be used in modeling, where Event-B is a mature formal method which has been widely used in a number of industry projects in a number of domains, such as automotive, transportation, space, business information, medical device and so on, And will propose using the Rodin as modeling tool for Event-B, which integrates modeling and proving as well as the Rodin platform is open source, so it supports a large number of plug-in tools.

High Performance Query Execution and Graph Visualization for Effectual Big Data Analytics with Cloud

2020 ◽  
Vol 17 (6) ◽  
pp. 2713-2715
Author(s):  
Prachi Garg ◽  
Sandip Kumar Goel ◽  
Sakshi Sachdeva ◽  
Neelam Oberoi
Keyword(s):  
Big Data ◽  
High Performance ◽  
Data Science ◽  
Predictive Analytics ◽  
Big Data Analytics ◽  
Streaming Data ◽  
Graph Visualization ◽  
Multiple Sources ◽  
Need To Evaluate ◽  
Usage Patterns

The domain of data science contains enormous approaches and high performance techniques in which there is need to evaluate the data from multiple dimensions so that the effectual outcomes and predictive knowledge can be extracted. Data Science and Analytics is now days one of the conspicuous streams of advanced knowledge discovery. Following are the key constituents and assorted elements which are required in the data science for cavernous and multi-dimensional analytics of the datasets including Streaming of Data from Multiple Sources and Channels, Pre-Processing and Cleaning of Real Time Streaming Data, Feature Engineering and Extraction of Prime Elements from Datasets, Numerical Analysis and Scientific Computations, Statistical Analytics on Datasets, Data Engineering Visualization, Plotting and Predictive Analytics. The paper is presenting the usage patterns and cavernous analytics of big data with the high performance visualization using Grafana.

scholarly journals Big Data Tools and Techniques: A Roadmap for Predictive Analytics

2019 ◽  
Vol 9 (2) ◽  
pp. 4986-4992
Keyword(s):  
Big Data ◽  
Data Analytics ◽  
Predictive Analytics ◽  
Big Data Analytics ◽  
File Systems ◽  
Apache Hadoop ◽  
Video Images ◽  
Different Types ◽  
Tools And Techniques ◽  
Apache Storm

Nowadays, large volume of data is generated in the form of text, voice, video, images and sound. It is very challenging job to handle and to get process these different types of data. It is very laborious process to analysis big data by using the traditional data processing applications. Due to huge scattered file systems, a big data analysis is a difficult task. So, to analyses the big data, a number of tools and techniques are required. Some of the techniques of data mining are used to analyze the big data such as clustering, prediction, and classification and decision tree etc. Apache Hadoop, Apache spark, Apache Storm, MongoDB, NOSQL, HPCC are the tools used to handle big data. This paper presents a review and comparative study of these tools and techniques which are basically used for Big Data analytics. A brief summary of tools and techniques is represented here.

scholarly journals Computational storage: an efficient and scalable platform for big data and HPC applications

2019 ◽  
Vol 6 (1) ◽  
Author(s):  
Mahdi Torabzadehkashi ◽  
Siavash Rezaei ◽  
Ali HeydariGorji ◽  
Hosein Bobarshad ◽  
Vladimir Alves ◽  
...  
Keyword(s):  
Big Data ◽  
High Performance ◽  
Distributed Processing ◽  
Data Access ◽  
Distributed Applications ◽  
Process Data ◽  
Storage Devices ◽  
Hadoop Mapreduce ◽  
Big Data Applications ◽  
Application Processor

AbstractIn the era of big data applications, the demand for more sophisticated data centers and high-performance data processing mechanisms is increasing drastically. Data are originally stored in storage systems. To process data, application servers need to fetch them from storage devices, which imposes the cost of moving data to the system. This cost has a direct relation with the distance of processing engines from the data. This is the key motivation for the emergence of distributed processing platforms such as Hadoop, which move process closer to data. Computational storage devices (CSDs) push the “move process to data” paradigm to its ultimate boundaries by deploying embedded processing engines inside storage devices to process data. In this paper, we introduce Catalina, an efficient and flexible computational storage platform, that provides a seamless environment to process data in-place. Catalina is the first CSD equipped with a dedicated application processor running a full-fledged operating system that provides filesystem-level data access for the applications. Thus, a vast spectrum of applications can be ported for running on Catalina CSDs. Due to these unique features, to the best of our knowledge, Catalina CSD is the only in-storage processing platform that can be seamlessly deployed in clusters to run distributed applications such as Hadoop MapReduce and HPC applications in-place without any modifications on the underlying distributed processing framework. For the proof of concept, we build a fully functional Catalina prototype and a CSD-equipped platform using 16 Catalina CSDs to run Intel HiBench Hadoop and HPC benchmarks to investigate the benefits of deploying Catalina CSDs in the distributed processing environments. The experimental results show up to 2.2× improvement in performance and 4.3× reduction in energy consumption, respectively, for running Hadoop MapReduce benchmarks. Additionally, thanks to the Neon SIMD engines, the performance and energy efficiency of DFT algorithms are improved up to 5.4× and 8.9×, respectively.

scholarly journals Big Data and IT Network Data Visualization

2018 ◽  
Vol 3 (1) ◽  
pp. 9-16 ◽  
Author(s):  
Lidong Wang
Keyword(s):  
Big Data ◽  
Network Analysis ◽  
Graphics Processing Units ◽  
Data Analytics ◽  
High Performance ◽  
Big Data Analytics ◽  
Network Visualization ◽  
Network Data ◽  
Graphics Processing ◽  
Performance Computing

Visualization with graphs is popular in the data analysis of Information Technology (IT) networks or computer networks. An IT network is often modelled as a graph with hosts being nodes and traffic being flows on many edges. General visualization methods are introduced in this paper. Applications and technology progress of visualization in IT network analysis and big data in IT network visualization are presented. The challenges of visualization and Big Data analytics in IT network visualization are also discussed. Big Data analytics with High Performance Computing (HPC) techniques, especially Graphics Processing Units (GPUs) helps accelerate IT network analysis and visualization.

Big Data and Analytics

2020 ◽  
pp. 47-65
Author(s):  
Sheik Abdullah A. ◽  
Priyadharshini P.
Keyword(s):  
Social Media ◽  
Big Data ◽  
Predictive Analytics ◽  
Data Warehousing ◽  
Big Data Analytics ◽  
Structured Data ◽  
Social Media Analytics ◽  
Data Set ◽  
Data Volume ◽  
Tools And Techniques

The term Big Data corresponds to a large dataset which is available in different forms of occurrence. In recent years, most of the organizations generate vast amounts of data in different forms which makes the context of volume, variety, velocity, and veracity. Big Data on the volume aspect is based on data set maintenance. The data volume goes to processing usual a database but cannot be handled by a traditional database. Big Data is stored among structured, unstructured, and semi-structured data. Big Data is used for programming, data warehousing, computational frameworks, quantitative aptitude and statistics, and business knowledge. Upon considering the analytics in the Big Data sector, predictive analytics and social media analytics are widely used for determining the pattern or trend which is about to happen. This chapter mainly deals with the tools and techniques that corresponds to big data analytics of various applications.

Synchronizing Execution of Big Data in Distributed and Parallelized Environments

Big Data ◽  
2016 ◽  
pp. 1555-1581
Author(s):  
Gueyoung Jung ◽  
Tridib Mukherjee
Keyword(s):  
Big Data ◽  
Distributed System ◽  
Data Analytics ◽  
High Performance ◽  
Large Scale ◽  
Big Data Analytics ◽  
Loosely Coupled ◽  
Current Trends ◽  
Distributed Computing Infrastructures ◽  
Performance Computing

In the modern information era, the amount of data has exploded. Current trends further indicate exponential growth of data in the future. This prevalent humungous amount of data—referred to as big data—has given rise to the problem of finding the “needle in the haystack” (i.e., extracting meaningful information from big data). Many researchers and practitioners are focusing on big data analytics to address the problem. One of the major issues in this regard is the computation requirement of big data analytics. In recent years, the proliferation of many loosely coupled distributed computing infrastructures (e.g., modern public, private, and hybrid clouds, high performance computing clusters, and grids) have enabled high computing capability to be offered for large-scale computation. This has allowed the execution of the big data analytics to gather pace in recent years across organizations and enterprises. However, even with the high computing capability, it is a big challenge to efficiently extract valuable information from vast astronomical data. Hence, we require unforeseen scalability of performance to deal with the execution of big data analytics. A big question in this regard is how to maximally leverage the high computing capabilities from the aforementioned loosely coupled distributed infrastructure to ensure fast and accurate execution of big data analytics. In this regard, this chapter focuses on synchronous parallelization of big data analytics over a distributed system environment to optimize performance.

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