scholarly journals Phylogenetic Trees of Aecial-Stage Rust Fungus, Puccinia paederiae (Dietel) Gorlenko Causing Gall on Paederia linearis Hook f.

2017 ◽  
Vol 15 (10) ◽  
pp. 739-752
Author(s):  
Wuttiwat JITJAK ◽  
Niwat SANOAMUANG

A rust fungus, Puccinia paederiae (Dietel) Gorlenko causing galls on the stem of the skunk vine (Paederia linearis Hook. f. var. linealis and P. linealis var. palida (Craib) Puff) was collected for phylogenetic study as no molecular data was exclusively available for this fungus. Three regions of ribosomal DNA sequences, small subunit (SSU), large subunit (LSU) and internal transcribed spacer region 1 (ITS1) were employed. The results of maximum parsimony and Bayesian methods suggested that among the trees with these sequences, this fungus was nested in Pucciniaceae clades and Puccinia species with supportive statistical values. This is the first report on the phylogenetic analysis using multiple genes of the rust, P. paederiae.

Phytotaxa ◽  
2019 ◽  
Vol 405 (5) ◽  
pp. 255-262
Author(s):  
K. G. GREESHMA GANGA ◽  
PATINJAREVEETTIL MANIMOHAN

Parasola psathyrelloides sp. nov. is described from Kerala State, India, based on both morphological and molecular data. Comprehensive description, photographs, and comparisons with morphologically similar and phylogenetically related species are provided. Sequences of both the nuclear ribosomal internal transcribed spacer region (ITS) and the nuclear ribosomal large subunit (nLSU) region of the new species were obtained and used in BLASTn searches. The phylogenetic study was based on Maximum likelihood (ML) analysis of the ITS sequences.


Phytotaxa ◽  
2019 ◽  
Vol 425 (4) ◽  
pp. 233-243
Author(s):  
SHIWALI RANA ◽  
SANJAY KUMAR SINGH

A fungal taxa isolated from leaf spots of Mallotus philippensis from Kangra district of North-Western Himalayan region of India is established as a new genus based on morphological characters of asexual-morphs, cultural characteristics and phylogenetic analyses of the partial nuclear ribosomal 28S large subunit (LSU) and internal transcribed spacer (ITS) rDNA sequence data. The generic placement of the genus has been determined based on DNA sequences from authenticated isolates. The present taxon has turned out to be distinct, showing nearly 90% identity with other known genera in Diaporthales based on nrDNA internal transcribed spacer region. The morphological description is provided for the new taxa and compared with the similar taxa belonging to the order Diaporthales. The culture was found to show heavy sporulation in all kind of media. The type specimen and ex type culture have been deposited in the Ajrekar Mycological Herbarium (AMH) and National Fungal Culture Collection of India (NFCCI-WDCM 932), respectively.


2021 ◽  
Vol 12 ◽  
Author(s):  
Boo Seong Jeon ◽  
Myung Gil Park

The phylum Perkinsozoa is known as an exclusively parasitic group within alveolates and is widely distributed in various aquatic environments from marine to freshwater environments. Nonetheless, their morphology, life cycle, the identity of the host, and physiological characteristics remain still poorly understood. During intensive sampling along the west coast of Korea in October and November 2017, a new parasitoid, which shares several characteristics with the extant families Perkinsidae and Parviluciferaceae, was discovered and three strains of the new parasitoid were successfully established in cultures. Cross-infection experiments showed that among the examined planktonic groups, only dinoflagellates were susceptible to the new parasitoid, with infections observed in species belonging to eight genera. Even though the new parasitoid shared many morphological and developmental characteristics with other Perkinsozoan parasites, it differed from them by its densely packed trophocyte structure without a large vacuole or hyaline material during the growth stage. These characteristics are common among Parviluciferaceae members. Furthermore, through palintomic extracellular sporogenesis, it produced characteristic interconnected sporocytes resembling a string of beads. Phylogenetic analyses based on the small subunit and large subunit ribosomal DNA sequences revealed that the new parasitoid was distantly related to the family Parviluciferaceae and was more closely related to the families Perkinsidae and Xcellidae. Morphological, ultrastructural, and molecular data on the new parasitoid raised the need to erect a new family, i.e., Pararosariidae, within the phylum Perkinsozoa with Pararosarium dinoexitiosum gen. et sp. nov. as the type species. The isolation and establishment in culture of the new parasitoid outside the family Parviluciferaceae in the present study would contribute to the better understanding of the diversity of Perkinsozoan parasites and provide useful material for comparisons to other parasite species in the further study.


Zootaxa ◽  
2021 ◽  
Vol 5071 (1) ◽  
pp. 151-165
Author(s):  
ZENG QI ZHAO ◽  
MICHAEL SURREY ◽  
WELLCOME HO ◽  
MILEN MARINOV ◽  
CAROLYN BLEACH ◽  
...  

Bursaphelenchus hildegardae Braasch et al., 2006 was collected from pine wood (Pinus radiata) growing in Kaingaroa Timberlands, and a bark beetle, Hylastes ater Paykull, 1800 in New Zealand. This is a new record for B. hildegardae, occuring in New Zealand, and the second report from the southern hemisphere in addition to Australia. In general, the New Zealand isolate of B. hildegardae corresponds well with the description of B. hildegardae given by Braasch et al. (2006) from Germany. The New Zealand isolate is characterized by having an adult body length of 807–1190 μm, medium a ratios (47.5–58.5 for female and 44.6–60.1 for male), b ratios of 9.8–14.5 (female) and 10.2–12.7 (male), c ratios of 18.8–25.2 (female) and 21.6–32.4 (male), c’ ratios of 4.0–4.4 (female) and 2.1–2.7 (male), and is characterised by having three incisures in the lateral fields, thorn-shaped spicules with a distinctly dorsally-bent thin hook-like condylus, and a dorso-ventally visible terminal bursa. In addition, molecular phylogeny using near full length small subunit (SSU), D2/D3 expansion segments of the large subunit (LSU) and the internal transcribed spacer region (ITS1 and 2) of the ribosomal rDNA supports the identification. A key to Bursaphelenchus species in the eggersi-group is given.  


Botany ◽  
2010 ◽  
Vol 88 (12) ◽  
pp. 1057-1071 ◽  
Author(s):  
Kazuaki Tanaka ◽  
Vadim A. Mel’nik ◽  
Maasa Kamiyama ◽  
Kazuyuki Hirayama ◽  
Takashi Shirouzu

Prosthemium (teleomorph Pleomassaria ) and Asterosporium (teleomorph unknown) are coelomycetous genera with stellate conidia on Fagales trees. Their morphological resemblance suggests their close relationship, but phylogenetic relatedness remains unknown. They have been distinguished on the basis of either conidiomatal morphology (pycnidia in Prosthemium and acervuli in Asterosporium) or their differing conidial septation (euseptate in Prosthemium and distoseptate in Asterosporium). To reveal their phylogenetic affinities and clarify reliable distinguishing phenotypical characters, five species of Prosthemium and two species of Asterosporium were investigated using sequences of the small subunit, large subunit, and internal transcribed spacer region of nuclear ribosomal DNA and β-tubulin gene from 43 isolates of these species. The analyses revealed the following: (i) Asterosporium typified by Asterosporium asterospermum on Fagus is a member of the Sordariomycetes and is distinct from Prosthemium belonging to the Dothideomycetes; (ii) Asterosporium betulinum on Betula species should be excluded from Asterosporium and transferred to Prosthemium as Prosthemium neobetulinum nom. nov.; (iii) conidial septation does not seem to have a diagnostic value, whereas conidiomatal morphology is useful in distinguishing both genera; (iv) the number and length of conidial arms are useful criteria in distinguishing Prosthemium species. A new species, Prosthemium intermedium sp. nov., found on both Betula ermanii and Betula maximowicziana , is described and illustrated.


Phytotaxa ◽  
2018 ◽  
Vol 369 (4) ◽  
pp. 260 ◽  
Author(s):  
K. G. GREESHMA GANGA ◽  
PATINJAREVEETTIL MANIMOHAN

Two species of Parasola, P. parvula sp. nov. and P. lilatincta are described from Kerala State, India, based on both morphology and molecular phylogeny. Descriptions with photographs of both the basidiocarps and the micro-structures and comparison with morphologically similar and phylogenetically related species are provided. Sequences of both the nuclear ribosomal internal transcribed spacer region (ITS) and the nuclear ribosomal large subunit (nLSU) region of the two species were obtained and used in BLASTn searches. Phylogenetic study was based on Maximum likelihood (ML) analysis of the ITS sequences.


Phytotaxa ◽  
2020 ◽  
Vol 458 (3) ◽  
pp. 207-214
Author(s):  
HUI YANG ◽  
HAI-XIA WU ◽  
CHAO DENG ◽  
ZHI-CHANG ZHANG ◽  
CHANG-HUA GU ◽  
...  

Two new fungal species, Phaeosaccardinula dalbergiae and Phaeosaccardinula yunnanensis collected from Yunnan Province, China are described based on morphology and molecular data. They are compared with related taxa of Phaeosaccardinula. Detailed description, illustrations and notes are provided for each species. Molecular analysis based on the phylogenetic tree of combined internal transcribed spacer and large subunit nuclear ribosomal DNA sequences show that the two species form distinct clusters within the genus Phaeosaccardinula.


Phytotaxa ◽  
2016 ◽  
Vol 286 (2) ◽  
pp. 107 ◽  
Author(s):  
K. P. DEEPNA LATHA ◽  
PATINJAREVEETTIL MANIMOHAN

Inocybe gregaria sp. nov. is described from Kerala State, India, based on morphological and molecular data. A comprehensive description, photographs, and comparisons with phenetically similar and phylogenetically related species are provided. The nuclear ribosomal internal transcribed spacer region (nrITS), a portion of the nuclear ribosomal large subunit (nrLSU) and a portion of the nuclear second-largest subunit of RNA polymerase II (rpb2) gene of this species were sequenced and analyzed. BLASTn searches using LSU and rpb2 sequences and subsequent ML phylogram of combined LSU and rpb2 sequences revealed that I. gregaria is conspecific with Inocybe sp. ZT8944, a collection assigned to the Inosperma clade that remains undescribed.


2008 ◽  
Vol 40 (1) ◽  
pp. 39-46 ◽  
Author(s):  
Armin MANGOLD ◽  
María P. MARTÍN ◽  
Klaus KALB ◽  
Robert LÜCKING ◽  
H. Thorsten LUMBSCH

Abstract:A phylogenetic study using DNA sequences of the nuclear ribosomal large subunit from 38 species is used to infer the phylogeny of species currently placed in Topeliopsis. The genus is shown to be polyphyletic; monophyly of previous and current circumscriptions of the genus are rejected using two alternative hypothesis tests. Topeliopsis meridiensis is shown to be closer to Chapsa than Topeliopsis, but additional studies are necessary to understand the circumscription of Chapsa. The new genus Melanotopelia Lumbsch & Mangold is described to accommodate T. toensbergii and T. rugosa. These species were previously regarded as aberrant in Topeliopsis because of their thin-walled ascospores and dark pigmented proper exciple. The new combination Graphis mexicana (Hale) Kalb, Lücking & Lumbsch is proposed and Graphis muscicola and Topeliopsis globosa reduced to synonymy with this species.


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