Molecular data show that Topeliopsis (Ascomycota, Thelotremataceae) is polyphyletic

2008 ◽  
Vol 40 (1) ◽  
pp. 39-46 ◽  
Author(s):  
Armin MANGOLD ◽  
María P. MARTÍN ◽  
Klaus KALB ◽  
Robert LÜCKING ◽  
H. Thorsten LUMBSCH
Keyword(s):  
Dna Sequences ◽  
New Genus ◽  
Alternative Hypothesis ◽  
Large Subunit ◽  
Molecular Data ◽  
New Combination ◽  
Phylogenetic Study ◽  
Hypothesis Tests ◽  
Thin Walled

Abstract:A phylogenetic study using DNA sequences of the nuclear ribosomal large subunit from 38 species is used to infer the phylogeny of species currently placed in Topeliopsis. The genus is shown to be polyphyletic; monophyly of previous and current circumscriptions of the genus are rejected using two alternative hypothesis tests. Topeliopsis meridiensis is shown to be closer to Chapsa than Topeliopsis, but additional studies are necessary to understand the circumscription of Chapsa. The new genus Melanotopelia Lumbsch & Mangold is described to accommodate T. toensbergii and T. rugosa. These species were previously regarded as aberrant in Topeliopsis because of their thin-walled ascospores and dark pigmented proper exciple. The new combination Graphis mexicana (Hale) Kalb, Lücking & Lumbsch is proposed and Graphis muscicola and Topeliopsis globosa reduced to synonymy with this species.

scholarly journals Phylogenetic Trees of Aecial-Stage Rust Fungus, Puccinia paederiae (Dietel) Gorlenko Causing Gall on Paederia linearis Hook f.

2017 ◽  
Vol 15 (10) ◽  
pp. 739-752
Author(s):  
Wuttiwat JITJAK ◽  
Niwat SANOAMUANG
Keyword(s):  
Bayesian Methods ◽  
Dna Sequences ◽  
Internal Transcribed Spacer ◽  
Phylogenetic Trees ◽  
Rust Fungus ◽  
Large Subunit ◽  
Molecular Data ◽  
Small Subunit ◽  
Phylogenetic Study ◽  
Internal Transcribed Spacer Region

A rust fungus, Puccinia paederiae (Dietel) Gorlenko causing galls on the stem of the skunk vine (Paederia linearis Hook. f. var. linealis and P. linealis var. palida (Craib) Puff) was collected for phylogenetic study as no molecular data was exclusively available for this fungus. Three regions of ribosomal DNA sequences, small subunit (SSU), large subunit (LSU) and internal transcribed spacer region 1 (ITS1) were employed. The results of maximum parsimony and Bayesian methods suggested that among the trees with these sequences, this fungus was nested in Pucciniaceae clades and Puccinia species with supportive statistical values. This is the first report on the phylogenetic analysis using multiple genes of the rust, P. paederiae.

scholarly journals Allophlebia, A New Genus to Accomodate Phlebia Ludoviciana (Agaricomycetes, Polyporales)

2021 ◽  
Author(s):  
Carla Rejane de Sousa Lira ◽  
Renata dos Santos Santos Chikowski ◽  
Vítor Xavier de Lima ◽  
Karl-Henrik Larsson ◽  
Tatiana Baptista Gibertoni
Keyword(s):  
Geographic Distribution ◽  
Type Species ◽  
New Genus ◽  
Morphological Characters ◽  
Molecular Data ◽  
New Combination ◽  
Hyphal System ◽  
Rdna Sequences ◽  
New Information ◽  
Thin Walled

Abstract Allophlebia is proposed as a new genus in Meruliaceae based on morphological characters and molecular data. The genus is typified by Peniophora ludoviciana and the new combination A. ludoviciana is proposed. The genus is so far monotypic. The type species is characterized by a resupinate basidioma, a monomitic hyphal system with clamp connections, two types of cystidia (leptocystidia and metuloids), clavate basidia, and hyaline, thin-walled and ellipsoid basidiospores. A phylogeny for Allophlebia and related taxa was inferred from ITS and nLSU rDNA sequences and new information about the geographic distribution of A. ludoviciana is provided.

Affinities of the Boletus chromapes group to Royoungia and the description of two new genera, Harrya and Australopilus

2012 ◽  
Vol 25 (6) ◽  
pp. 418 ◽  
Author(s):  
Roy E. Halling ◽  
Mitchell Nuhn ◽  
Todd Osmundson ◽  
Nigel Fechner ◽  
James M. Trappe ◽  
...  
Keyword(s):  
New Genus ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Elongation Factor ◽  
Sister Group ◽  
Molecular Data ◽  
Translation Elongation ◽  
Spore Deposit ◽  
Large Subunit Rdna ◽  
Translation Elongation Factor 1Α

Harrya is described as a new genus of Boletaceae to accommodate Boletus chromapes, a pink-capped bolete with a finely scabrous stipe adorned with pink scabers, a chrome yellow base and a reddish-brown spore deposit. Phylogenetic analyses of large-subunit rDNA and translation elongation factor 1α confirmed Harrya as a unique generic lineage with two species, one of which is newly described (H. atriceps). Some Chinese taxa were recently placed in a separate genus, Zangia, supported by both morphology and molecular data. Multiple accessions from Queensland, Australia, support the synonymy of at least three species in a separate Australian clade in the new genus, Australopilus. The truffle-like Royoungia is also supported as a separate lineage in this clade of boletes. Even though it lacks stipe characters, it possesses the deep, bright yellow to orange pigments in the peridium. Additional collections from Zambia and Thailand represent independent lineages of uncertain phylogenetic placement in the Chromapes complex, but sampling is insufficient for formal description of new species. Specimens from Java referable to Tylopilus pernanus appear to be a sister group of the Harrya lineage.

Sinalliaria, a new genus of Brassicaceae from eastern China, based on morphological and molecular data

Phytotaxa ◽  
2014 ◽  
Vol 186 (4) ◽  
pp. 188 ◽  
Author(s):  
Ying-Ying Zhou ◽  
HONG-WEI ZHANG ◽  
JIANG-QIN HU ◽  
Xiao-Feng Jin
Keyword(s):  
Dna Sequences ◽  
New Genus ◽  
Eastern China ◽  
Distinct Group ◽  
Morphological Characters ◽  
Molecular Data ◽  
New Combinations ◽  
The Family ◽  
Morphological And Molecular Data ◽  
Seed Testa

Sinalliaria is described here as a new genus of the family Brassicaceae from eastern China, based on the morphological characters and molecular sequences. Sinalliaria differs from the related genus Orychophragmus in having basal leaves petiolate, simple or rarely with 1‒3 lateral lobes (not pinnatisect); cauline leaves petiolate, cordate at base (not sessile, auriculate or amplexicaul at base); petals obovate to narrowly obovate, claw inconspicuous (not broadly obovate, with a claw as along as sepal); siliques truncate (not long-beaked) at apex. The microscopic characters of seed testa also show significant differences between Sinalliaria and Orychophragmus. Phylogenetic evidence from DNA sequences of nuclear ribosomal ITS and plastid region trnL-trnF indicates that Sinalliaria is a distinct group related to Orychophragmus and Raphanus, but these three genera do not form a clade. The new genus Sinalliaria is endemic to eastern China and has only one species and one variety. The new combinations, S. limprichtiana (Pax) X. F. Jin, Y. Y. Zhou & H. W. Zhang and S. limprichtiana var. grandifolia (Z. X. An) X. F. Jin, Y. Y. Zhou & H. W. Zhang are proposed here.

A new species and a new combination in the genus Aureoboletus (Boletales, Boletaceae) from southern China

Phytotaxa ◽  
2015 ◽  
Vol 222 (2) ◽  
pp. 129 ◽  
Author(s):  
Nian-Kai Zeng ◽  
MING ZHANG ◽  
ZHI-QUN Liang
Keyword(s):  
Rna Polymerase Ii ◽  
Southern China ◽  
Large Subunit ◽  
Line Drawing ◽  
Elongation Factor ◽  
Molecular Data ◽  
New Combination ◽  
Translation Elongation ◽  
Microscopic Features ◽  
A New Species

Two lineages of Aureoboletus (Boletales, Boletaceae) from southern China were revealed by using molecular data based on combined dataset of the nuclear ribosomal large subunit RNA (nrLSU), the translation elongation factor apha-1 (tef1-a) and the largest subunit of RNA polymerase II (rpb1). One of them corresponds with the previous morphology-based taxon, viz. Boletellus longicollis, another one is different from those taxa described based on morphological features. And, thus, Auroboletus clavatus sp. nov. and A. longicollis comb. nov. were proposed. A detailed description, colour photos of fresh basidiomata, and a line-drawing of microscopic features of the two taxa were provided.

scholarly journals Cibaomyces, a new genus of Physalacriaceae from East Asia

Phytotaxa ◽  
2014 ◽  
Vol 162 (4) ◽  
pp. 198 ◽  
Author(s):  
Hao Yan-Jia ◽  
Qin Jiao ◽  
Yang Zhu-Liang
Keyword(s):  
Ribosomal Rna ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Molecular Evidence ◽  
Internal Transcribed Spacer Region ◽  
Line Drawings ◽  
Phylogenetic Placement ◽  
Molecular Phylogenetic ◽  
Thin Walled

A new genus in Physalacriaceae, Cibaomyces, typified by C. glutinis, is described using morphological and molecular evidence. Cibaomyces is morphologically characterized by the combination of the following characters: basidioma small to medium-sized, collybioid to tricholomatoid; pileus viscid; hymenophore sinuate to subdecurrent, relatively distant, with brown lamellar edge; stipe sticky and densely covered with felted squamules; basidiospores thin-walled, ornamented with finger-like projections; cystidia nearly cylindrical, thin-walled, often heavily incrusted. Molecular phylogenetic analyses using DNA nucleotide sequences of the internal transcribed spacer region and the large subunit nuclear ribosomal RNA loci indicated that Cibaomyces was related to Gloiocephala, Laccariopsis and Rhizomarasmius. A description, line drawings, phylogenetic placement and comparison with allied taxa are presented. 

scholarly journals Reclassification of Actinobacillus muris as Muribacter muris gen. nov., comb. nov.

2015 ◽  
Vol 65 (Pt_10) ◽  
pp. 3344-3351 ◽  
Author(s):  
Werner Nicklas ◽  
Magne Bisgaard ◽  
Bent Aalbæk ◽  
Peter Kuhnert ◽  
Henrik Christensen
Keyword(s):  
16S Rrna ◽  
Dna Sequences ◽  
Type Strain ◽  
New Genus ◽  
Gene Sequence ◽  
Sequence Similarity ◽  
New Combination ◽  
Phylogenetic Position ◽  
Rrna Gene ◽  
Sequence Comparisons

To reinvestigate the taxonomy of [Actinobacillus] muris, 474 strains, mainly from mice and rats, were characterized by phenotype and 130 strains selected for genotypic characterization by 16S rRNA and partial rpoB gene sequencing. The type strain was further investigated by whole-genome sequencing. Phylogenetic analysis of the DNA sequences showed one monophyletic group with intragroup similarities of 96.7 and 97.2 % for the 16S rRNA and rpoB genes, respectively. The highest 16S rRNA gene sequence similarity to a taxon with a validly published name outside the group was 95.9 %, to the type strain of [Pasteurella] pneumotropica. The closest related taxon based on rpoB sequence comparison was ‘Haemophilus influenzae-murium’, with 88.4 % similarity. A new genus and a new combination, Muribacter muris gen. nov., comb. nov., are proposed based on a distinct phylogenetic position based on 16S rRNA and rpoB gene sequence comparisons, with major divergence from the existing genera of the family Pasteurellaceae. The new genus has the characteristics of [A.] muris with the emendation that acid formation from ( − )-d-mannitol and hydrolysis of aesculin are variable, while the α-glucosidase test is positive. There is no requirement for exogenously supplied NAD (V factor) for the majority of strains investigated; however, one strain was found to require NAD. The major fatty acids of the type strain of Muribacter muris were C14 : 0, C14 : 0 3-OH/iso-C16 : 1 I, C16 : 1ω7c and C16 : 0, which is in line with most genera of the Pasteurellaceae. The type strain of Muribacter muris is CCUG 16938T ( = NCTC 12432T = ATCC 49577T).

An extraordinary new genus and three new species of Acostemmini (Hemiptera: Cicadellidae: Deltocephalinae) from Madagascar with comments on the morphology and classification of the tribe

Zootaxa ◽  
2012 ◽  
Vol 3209 (1) ◽  
pp. 28 ◽  
Author(s):  
J. N. ZAHNISER ◽  
M. W. NIELSON
Keyword(s):  
New Species ◽  
New Genus ◽  
Strong Support ◽  
Molecular Data ◽  
Morphological Characterization ◽  
New Combination ◽  
Speci Mens ◽  
Three New Species ◽  
First Time

The circumscription and morphological characterization of the deltocephaline tribe Acostemmini is revised based on dis-coveries of new and poorly known taxa from recent collections in Madagascar and from examination of the type speci-mens of Alocoelidia fulva Evans, Iturnoria insulana Evans, and Protonesis delegorguei Spinola. Alocoelidia Evans 1954,Caelidioides Signoret 1880, Iturnoria Evans 1954, and Protonesis Spinola 1850 were previously placed in Coelidiinaebut were later removed from the subfamily and until now have been unplaced to subfamily are placed here in Deltocepha-linae: Acostemmini, new placement. A new genus and species, Ikelibeloha cristata gen. n., sp. n., are described that havean unusually modified structure of the head and a large, crested pronotum. Molecular data (28S, Histone H3 genes) wereobtained for Ikelibeloha and Iturnoria, and analyzed with other members of Deltocephalinae. Results of the phylogeneticanalyses show strong support for the monophyletic clade ((Acostemma, Eryapus), (Ikelibeloha, Iturnoria)) and thus a re-lationship between previously described Acostemmini, Ikelibeloha, and Iturnoria has strong statistical support, and aclose relationship is inferred between these and the morphologically similar Alocoelidia, Caelidioides, and Protonesis.Two new species of Alocoelidia, A. maurae sp. n. and A. chasei sp. n. are described, and the genus is redescribed. Themale genitalia of Caelidioides tristis (Signoret), Iturnoria insulana, Alocoelidia fulva, and Acostemella rubra Evans areillustrated and described for the first time. The female genitalia of A. fulva, C. tristis and I. insulana are described and thefirst and second valvulae of C. tristis are illustrated. The habitus and face of Protonesis delegorguei are illustrated and thegenus is redescribed. The characters traditionally used to define Acostemmini are reviewed with notes on their known de-grees of variation, and characters that differentiate Acostemmini from the closely related tribe Stegelytrini are discussed.The type of Malagasiella minima Evans was also examined, and Malagasiella Evans, 1954 is considered a junior syn-onym of Doratulina Melichar, 1903 (Deltocephalinae: Stenometopiini), syn. n. giving the new combination Doratulina minima (Evans) comb. n.

The genus Relicinopsis is nested within Relicina (Parmeliaceae, Ascomycota)

2017 ◽  
Vol 49 (3) ◽  
pp. 189-197 ◽  
Author(s):  
Paul M. KIRIKA ◽  
Pradeep K. DIVAKAR ◽  
Steven D. LEAVITT ◽  
Kawinnat BUARUANG ◽  
Ana CRESPO ◽  
...  
Keyword(s):  
Ribosomal Dna ◽  
Dna Sequences ◽  
Alternative Hypothesis ◽  
Morphological Features ◽  
Evolutionary Relationships ◽  
New Combinations ◽  
Hypothesis Tests ◽  
Phylogenetic Framework ◽  
Phenotypic Features

AbstractMacro-morphological features traditionally used to segregate genera in Parmeliaceae have been shown to be highly plastic, placing limits on their taxonomic value. Here we aim to elucidate the evolutionary relationships of the genera Relicina and Relicinopsis and reassess the phenotypic features traditionally used to separate these genera. To this end, we gathered ribosomal DNA sequences of ITS, nuLSU and mtSSU and analyzed them in a phylogenetic framework. Relicina was recovered as paraphyletic, with Relicinopsis nested within, and three different clades were identified within Relicina. Alternative hypothesis tests significantly rejected the monophyly of Relicina. Our results indicate that the presence or absence of bulbate cilia is of limited taxonomic value in this clade. Based on differences in conidia, however, we propose to accept Relicinopsis as a subgenus within Relicina as Relicina subgen. Relicinopsis (Elix & Verdon) Kirika, Divakar & Lumbsch. It is proposed that five new combinations of species previously classified in Relicinopsis be placed in Relicina.

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