scholarly journals Assessment of genetic diversity in main local sheep breeds from Romania using microsatellite markers

2020 ◽  
Vol 63 (1) ◽  
pp. 53-59 ◽  
Author(s):  
Andreea Dudu ◽  
Gina-Oana Popa ◽  
Elena Ghiță ◽  
Rodica Pelmuș ◽  
Cristina Lazăr ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Animal Husbandry ◽  
High Rate ◽  
Farm Animals ◽  
Mountain Areas ◽  
Breeding Programs ◽  
Sheep Breeds ◽  
Conservation Plans ◽  
High Degree

Abstract. The state of the local breeds of farm animals is increasingly precarious worldwide because of the aggressive introduction of breeds with improved economical traits. The preference of the breeders for local breeds is due to their higher adaptability to the particular climate and relief conditions of the mountain areas, to the high rate of assimilation of the feeds from these regions and to their increased resistance to diseases. This study analyzes the genetic variation of the main four local Romanian sheep breeds (Tsurcana, Tsigai, Ratska and Teleorman Blackhead) in terms of stock and economic importance, using 18 microsatellite markers. The mean number of alleles per locus was of 9.764. The values of genetic diversity parameters exhibited a high degree of polymorphism for the analyzed breeds, although inbreeding was highlighted particularly in Tsurcana and Tsigai. These breeds also showed an intense gene flow among them and were less differentiated in comparison with Ratska and Teleorman Blackhead. The results of this study may be useful for breeding programs and conservation plans since the genetic resources of the local breeds must be preserved so as to maintain an adequate level of biodiversity in animal husbandry.

Assessing genetic diversity and differentiation in Portuguese coarse-wool sheep breeds with microsatellite markers

2008 ◽  
Vol 78 (1-3) ◽  
pp. 32-40 ◽  
Author(s):  
F. Santos-Silva ◽  
R.S. Ivo ◽  
M.C.O. Sousa ◽  
M.I. Carolino ◽  
C. Ginja ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Sheep Breeds

scholarly journals Review: Genetic diversity studies using microsatellite markers and their contribution in supporting sustainable sheep breeding programs

2017 ◽  
Vol 1 (01) ◽  
pp. 46-51
Author(s):  
OUMER SHERIFF ◽  
KEFYALEW ALEMAYEHU
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Polymorphic Information Content ◽  
Domestic Sheep ◽  
Breeding Programs ◽  
Sheep Breeding ◽  
Population Structures ◽  
The Mean ◽  
Tree Building ◽  
Diversity Studies

Sheriff O, Alemayehu K. 2017. Review: Genetic diversity studies using microsatellite markers and their contribution in supporting sustainable sheep breeding programs. Asian J Agric 1: 46-51. Microsatellites have been widely accepted and employed as useful molecular markers for measuring genetic diversity and divergence within and among populations. The various parameters developed so far to measure genetic diversity within and among populations are observed and expected heterozygosities (Ho and He), the mean number of alleles per locus (MNA),polymorphic information content (PIC), genetic distance and phylogenetic or tree building approach.The objective of thisreview was therefore to quantifythe genetic diversity studies of domestic sheep populations using microsatellite markersand their contribution in supporting sustainable sheep breeding programs. From the review, it is possible to see that there was high within population genetic variations in all the studied sheep populations, poor level of population differentiations and high levels of inbreeding. On the other hand, low estimates of hetrozygosities and mean number of alleles and employing only few and weak markers were observed in some of the studies. The gaps observed in the previous genetic diversity studies of the sheep populations may demand further works to reveal more information on the population structures andto start appropriate and sustainable breeding programs.

Evaluation of genetic diversity among some commercial cultivars and Iranian wild strains of Agaricus bisporus by microsatellite markers

Botany ◽  
2016 ◽  
Vol 94 (1) ◽  
pp. 9-13 ◽  
Author(s):  
Nader Rokni ◽  
Ebrahim Mohammadi Goltapeh ◽  
Alireza Shafeinia ◽  
Naser Safaie
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Agaricus Bisporus ◽  
Breeding Programs ◽  
Banding Patterns ◽  
Commercial Cultivars ◽  
Wild Strains ◽  
Cultivated Mushroom ◽  
High Level ◽  
Promising Source

Agaricus bisporus (Lange) Imbach is the most widely cultivated mushroom in Iran. Lack of diversity in mushroom crops, especially where disease is concerned, creates a crucial risk for the currently grown cultivars. The aim of this study was to assess the genetic diversity among Iranian wild strains and some commercial cultivars by using microsatellite markers. Eighteen codominant microsatellite markers of A. bisporus (AbSSR) were used to distinguish 17 wild and commercial strains. All of the microsatellite markers used in this research gave clear banding patterns, and only one strain remained undistinguished. Among 106 generated alleles, the wild subgroup presented 53 alleles never found both in brown and white commercial cultivars, and 42 alleles never found in commercial brown strains. The dendrogram obtained by UPGMA clustering analysis separated A. bisporus strains into six groups. Based on our results, the high level of genetic diversity among Iranian wild strains, compared with the commercial strains, provides a new and promising source of diversity for A. bisporus breeding programs. To our knowledge this is the first relevant study of biodiversity in native Iranian populations of A. bisporus.

scholarly journals STUDY OF GENETIC DIVERSITY USING MICROSATELLITE MARKERS IN IRAQI SHEEP BREEDS

2020 ◽  
Vol 51 (5) ◽  
pp. 1367-1374
Author(s):  
Hadi & et al.
Keyword(s):  
Genetic Diversity ◽  
Microsatellite Markers ◽  
Allele Frequency ◽  
Genetic Relationships ◽  
Allelic Frequency ◽  
Dominant Allele ◽  
Sheep Breeds ◽  
Biotechnology Research ◽  
Pcr Technology ◽  
Awassi Breed

Genotypes and allele frequency values ​​were studied to determine the genetic diversity of three microsatellite markers (BM1329, BM134 and CSSM66) in two local Iraqi sheep breeds (50 Awasi ewes (AW) and 50 Naimi ewes (NA)) and breed in one Agricultural Stations in middle of Al-Furut Iraq (Karbala Governorate). The Genetic analyses for the study were carried out at the Biotechnology Research Center /  Al-Nahrain University using PCR technology to obtain alleles for the studied microsatellites. The results of this study indicate that there is a multiplicity of genotypes and alleles resulting from these markers among the members of the single breed and between the studied breeds. It was revealed that the allele frequency values showed the presence of alleles dominant on the rest of alleles produce in this sample studied, the BM1329 microsatellite of the Awassi breed produced the dominant allele frequency in 195(0.25) and 320 (0.25), While in the Naimi breed were the values ​​of the dominant allele frequency of the195(0.22), 220(0.21) and 230(0.24), and the dominant allelic frequency of (BM134) marker in the Awassi breed was 118 and 135 and repeated (0.21 and 0.26, respectively). For CSSM66 microsatellite, the dominant allelic results and their allelic frequency values ​​were (195 (0.20), 205 (0.23) and 220 (0.25)) for Awasi breed, whereas it was 180 (0.24), 195 (0.28) and 220 (0.22) for Nuaimi breed. These results enable us to use these markers as a means of determining the diversity and genetic relationships between individuals of a single breed as well as between breeds.

scholarly journals Molecular Assessment of Genetic Diversity among Egyptian Landraces of Wheat (Triticum aestivum L.) Using Microsatellite Markers

2020 ◽  
pp. 46-58 ◽  
Author(s):  
Ahmed Medhat Mohamed Al-Naggar ◽  
Mohamed Abd El-Maboud Abd El-Shafi ◽  
Mohamed Helmy El-Shal ◽  
Ali Hassan Anany
Keyword(s):  
Genetic Diversity ◽  
Triticum Aestivum ◽  
Microsatellite Markers ◽  
Ssr Markers ◽  
Triticum Aestivum L ◽  
Genetic Progress ◽  
High Genetic Diversity ◽  
Breeding Programs ◽  
High Polymorphism Information Content ◽  
Wheat Landraces

To increase the genetic progress in wheat (Triticum aestivum L.) yield, breeders search for germplasm of high genetic diversity, one of them is the landraces. The present study aimed at evaluating genetic diversity of 20 Egyptian wheat landraces and two cultivars using microsatellite markers (SSRs). Ten SSR markers amplified a total of 27 alleles in the set of 22 wheat accessions, of which 23 alleles (85.2%) were polymorphic. The majority of the markers showed high polymorphism information content (PIC) values (0.67-0.94), indicating the diverse nature of the wheat accessions and/or highly informative SSR markers used in this study. The genotyping data of the SSR markers were used to assess genetic variation in the wheat accessions by dendrogram. The highest genetic distance was found between G21 (Sakha 64; an Egyptian cultivar) and the landrace accession No. 9120 (G11). These two genotypes could be used as parents in a hybridization program followed by selection in the segregating generations, to identify some transgressive segregates of higher grain yield than both parents. The clustering assigned the wheat genotypes into four groups based on SSR markers. The results showed that the studied SSR markers, provided sufficient polymorphism and reproducible fingerprinting profiles for evaluating genetic diversity of wheat landraces. The analyzed wheat landraces showed a good level of genetic diversity at the molecular level. Molecular variation evaluated in this study of wheat landraces can be useful in traditional and molecular breeding programs.

scholarly journals Genetic structure of the Southern meat cattle breed based on microsatellite markers

2019 ◽  
Vol 21 (91) ◽  
pp. 21-28
Author(s):  
A. S. Kramarenko
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Microsatellite Markers ◽  
Bos Taurus ◽  
Bos Indicus ◽  
Cattle Breed ◽  
Animal Husbandry ◽  
State Enterprise ◽  
Tissue Samples ◽  
Cattle Breeds

The Southern Meat cattle is a composite breed developed by crossing Cuban zebu (Bos indicus) with different cattle breeds (Bos taurus) – local the Red Steppe, Hereford, Charolais, Santa Gertrudis, Dairy Shorthorn. Genetic structure of the Southern meat cattle breed from the State Enterprise Experimental Farm “Askaniyske” NAAS Ukraine (Kherson region) were investigated based on the microsatellite DNA loci. Analysis included 192 animals. A panel of 12 bovine-specific microsatellite markers (TGLA227, BM2113, TGLA53, ETH10, SPS115, TGLA122, INRA23, TGLA126, BM1818, ETH3, ETH225 and BM1824), recommended of the ISAG for cattle genetic diversity studies, was selected for genetic characterization and revealing the extent of genetic diversity in the Southern Meat cattle breed. Genomic DNA was extracted from tissue samples using Nexttec column (Nexttec Biotechnology GmbH, Germany) following the manufacturer's instructions. All laboratory tests were conducted in the laboratory of Molecular Genetics, Animal Center of Biotechnology and Molecular Diagnostics, All-Russian Research Institute for Animal Husbandry named after academy member L.K. Ernst. We report the distribution and the frequency of a taurine and an indicine specific alleles in the Southern Meat cattle breed using literature data about the Zebu and different cattle breeds genetic structure based on microsatellite loci from our list. It can be assumed that the TGLA22777, BM2113141-143, ETH10209-211, TGLA122149, INRA23194-198, TGLA126123, ETH225156-158-160 alleles among the Southern Meat cattle breed examined individuals were inherited from a B. indicus ancestor. On the other hand, the TGLA53156, ETH10217-219, TGLA122143, INRA23202, TGLA126115, ETH225148-150, BM1824188-190 alleles in the Southern Meat cattle gene pool may be inherited from a B. taurus ancestor (i.e., taurine breeds diagnostic alleles).

scholarly journals Genetic diversity of Ukrainian local pig breeds based on microsatellite markers

2018 ◽  
Vol 9 (2) ◽  
pp. 177-182 ◽  
Author(s):  
S. S. Kramarenko ◽  
S. I. Lugovoy ◽  
V. R. Kharzinova ◽  
V. Y. Lykhach ◽  
A. S. Kramarenko ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Variability ◽  
Microsatellite Markers ◽  
Pig Breeds ◽  
Genetic Groups ◽  
The Mean ◽  
Living Material ◽  
The Individual ◽  
High Degree ◽  
Private Alleles

Preserving the current diversity of the living material on Earth is fundamental for the survival of future generations . A study was conducted to investigate the genetic diversity of Ukrainian local pig breeds. A total of 350 pigs representing five local pig breeds from Ukraine (Mirgorod – MIR, Poltava Meat – PM, Ukrainian Meat – UM, Ukrainian White Steppe – UWS and Ukrainian Spotted Steppe – USS) and one commercial breed (Duroc, DUR) were sampled. Twelve microsatellite loci (SW24, S0155, SW72, SW951, S0386, S0355, SW240, SW857, S0101, SW936, SW911 and S0228) were selected and belong to the list of microsatellite markers recommended by ISAG. The results indicate that there exists, in general, a high degree of genetic variability within the five Ukrainian local pig breeds. However, the genetic variability in the MIR and PM breeds was significantly lower (mean Na = 2.92–3.92; Ho = 0.382–0.411; FIS = 0.178–0.184) than in the other three Ukrainian local pig breeds – UM, UWS and USS (mean Na = 5.00–8.42; Ho = 0.549–0.668; FIS = 0.027–0.066). Thirty-four private alleles were identified among the six analyzed genetic groups which were distributed between 11 of the 12 loci. A high number of alleles typical for the breed (private alleles) was observed in Duroc pigs – 9 alleles did not occur in Ukrainian local pig breeds. The HWE test showed that all of the polymorphic loci deviated from HWE (P < 0.05) in at least one population. Loci S0355 (5), S0386 (4) and SW24 (4) presented a higher number of populations in imbalance. The mean FST showed that approximately 77.8% of the genetic variation was within-population and 12.2% was across the populations. The five Ukrainian local breeds were classified into two major groups, according to the phylogenetic tree, which was based on standard genetic distance. Overall, we found that 92.6% of the individual pigs were correctly assigned (324 out of 350) to the respective breed of origin, which is likely a consequence of the well-defined breed structure. Probabilities from the allocation test of individuals for the six pig genetic groups were estimated with Structure Harvester. In cluster 1 the highest grouping probabilities were found for the MIR (0.917) and PM (0.750) breeds. Local breeds UM (0.824) and USS (0.772) were grouped in cluster 2. Cluster 3 was related to the local pig breed USW (0.873). Cluster 4 presented high allocation probabilities for the commercial pig breed Duroc (0.924). The obtained results are important for the future conservation of Ukrainian local pig breeds.

ANIMAL HUSBANDRY IN THE SOUTH OF RUSSIA: THE STATE AND PROSPECTS OF DEVELOPMENT BASED ON THE INTRODUCTION OF MODERN MOLECULAR GENETIC TECHNOLOGIES

2021 ◽  
Vol 1 (19) ◽  
pp. 340-344
Author(s):  
E.Yu. Anisimova ◽  
N.I. Mosolova ◽  
Yu.D. Danilov ◽  
E.V. Karpenko ◽  
O.A. Knyazhechenko
Keyword(s):  
Genetic Diversity ◽  
Comparative Analysis ◽  
Arid Regions ◽  
Molecular Genetic ◽  
Animal Husbandry ◽  
Farm Animals ◽  
Gene Pools ◽  
Genetic Potential ◽  
Genetic Technologies ◽  
Regions Of Russia

The characteristics of gene pools are given and a comparative analysis of the genetic diversity of breeds of farm animals bred in the conditions of arid regions of Russia using various methods of studying DNA is performed. Innovative proposals on the optimal strategy for the maintenance and breeding of breeds have been developed. For the most complete realization of the genetic potential of farm animals, new approaches have been developed to increase the productive effect of feed.

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