scholarly journals Direct soil organic matter compound specific δ13C analysis using pyrolysis (Py-CSIA): identification of biomarkers in a dehesa from Southern Spain

Author(s):  
José A. González-Pérez ◽  
Lyla M. San Emeterio ◽  
Francisco J. González-Vila ◽  
María T. Domínguez-Núñez ◽  
José M. de la Rosa

<p>Dehesa are woodlands typical of southern Mediterranean climate species modified by human to seasonal wood-pastures adapted to the unpredictability of the Mediterranean climate. Changes in climatic and environmental conditions can affect both, plant biomass chemical and isotope composition that will eventually be reflected in soil organic matter (SOM). Nowadays, many ecological studies use bulk isotope values, which represent a weighted mean average of the different necromass compounds. An isotopic characterization of individual compounds is desirable to differentiate the isotopic composition of the main plant components. Soil organic matter is composed mainly of high MW biopolymers i.e. polysaccharides, polypeptides, polypeptides, polyesters, etc. not amenable to most chromatographic techniques without the use of intense extraction and sample preparation steps.</p><p>Here, an analytical pyrolysis technique combining Py-GC with a continuous flow isotope ratio mass spectrometer (IRMS) (Py-CSIA) is described and validated for the direct study of compound specific isotope composition in soil samples.</p><p>The consistency of the Py-CSIA was tested using a standard n-alkanes mixture (dissolved C16 to C30 series with increasing concentrations along three pentads, Indiana Univ. SIL mix. Type B). The values obtained fitted to a straight line (R<sup>2</sup> > 0.999). No induced thermal cracking nor deviations from the acclaimed isotope composition (fractionation) was observed up to high pyrolysis temperature (< 500 °C).</p><p>Composite dehesa (Pozoblanco , Córdoba, Spain) surface soil samples were taken under evergreen oak canopy . A detailed SOM study was performed using conventional analytical pyrolysis (Py-GC/MS) and δ<sup>13</sup>C for specific compounds released after pyrolysis was done using Py-CSIA.</p><p>Well-resolved chromatograms were obtained by Py-GC/MS and a total of 40 pyrolysis compounds were detected that represented the chemical variability of soil organic matter and consisted mainly of polysaccharide, lignin-derived compounds (G- and S- units), fatty acids and n-alkanes. When coupling Py with GC-C-IRMS, many c peaks were well resolved and with a sufficient chromatographic separation to give accurate δ<sup>13</sup>C readings. Nonetheless, there were compounds with high δ<sup>13</sup>C standard deviations considered not sufficiently resolved for a reliable estimation of their isotope composition due to coelution and were discarded.</p><p>The δ<sup>13</sup>C for specific biomass compounds released by pyrolysis of soil was in line with the expected values for C3 plants i.e. Quercus spp. Polysaccharide derived products (furans, cyclopentanones), showed slightly enriched δ<sup>13</sup>C values (-26.0 ± 0.47 ‰) in accordance with their naturally <sup>13</sup>C enriched composition. Although no statistical differences were found, lignin-derived units showed slightly depleted δ<sup>13</sup>C ( -27.4 ± 0.78 ‰). Accordingly, depleted δ<sup>13</sup>C values for lipids (-35.1 ± 2.41 ‰) and alkanes (-35.5 ± 2.20 ‰) were found, the latter with lighter isotope composition with increasing the hydrocarbon length.</p><p>Here we show the possibility of using this particular analytical pyrolysis technique (Py-CSIA) for the direct measurement of δ<sup>13</sup>C in relevant specific soil organic matter components including those from polysaccharides (cellulose/hemicellulose), lignin, lipid/waxes and also peptide/protein-derived compounds.</p><p><strong>Acknowledgement:</strong> Ministerio de Ciencia Innovación y Universidades (MICIU) for INTERCARBON project (CGL2016-78937-R) DECAFUN (CGL2015-70123-R). L. San Emeterio also thanks MICIU for funding FPI research grants (BES-2017-07968). Mrs Desiré Monis & Mr Eduardo Gutiérrez González are acknowledged for technical assistance.</p>

2021 ◽  
Author(s):  
Layla M. San-Emeterio ◽  
Ignacio Pérez-Ramos ◽  
Maria Teresa Domínguez-Núñez ◽  
Francisco Javier González-Vila ◽  
José Antonio González-Pérez

<p>Soil organic matter (SOM) is composed of multiple components from the living material, such as phenolic compounds, organic acids, lipids, peptides, polyesters, etc. A relevant part of these compounds forms part of supramolecular structures or mineral associations. Non-exchangeable hydrogen in SOM compounds is worth of study as an approach to estimate dynamic processes such as stabilization, mineralization, or biodegradation. The determination of H isotopes in SOMs faces analytical challenges related with e.g., the strength of the H bond, its exchangeability with ambient H from water or the instability of the isotopic analysis [1]. Nonetheless, along with the study of C isotopes, the study of H isotopes may certainly result in a complementary to give some light in this complex system, estimate the fate of organic compounds, and to better understand the link between hydrogen and carbon cycles in SOM [2].</p><p>In this communication, we describe and validate a methodology based on analytical pyrolysis for the direct measure of compound-specific H isotope composition (δ<sup>2</sup>H) in soil samples. The technique combines Py-GC with a high-temperature conversion reactor and a continuous flow isotope ratio mass spectrometer (IRMS) (Py-GC-HTC-IRMS).</p><p>Composite <em>dehesa</em> surface (0-10 cm) soil samples (Pozoblanco, Córdoba, Spain) were taken from four forced climatic treatment plots representing warming (W), drought (D), its combination (W+D), and control (D), installed in two different habitats: under evergreen oak canopy and in the open pasture. The samples were analysed in triplicate by conventional analytical pyrolysis (Py-GC/MS) and in parallel for δ<sup>2</sup>H Py-CSIA using the same chromatographic conditions and separation column type.</p><p>Up to 32 compounds were identified by Py-GC/MS, which H isotope composition corresponded presumably to non-exchangeable H, and with origin mainly from lignin (G- and S- units) and lipids. The H isotope composition showed an estimated average of -55 ‰ ± 7.09 for G-lignin units, -64 ‰ ± 8.64 S-lignin units and lighter -112 ‰ ± 4.32 for fatty acids (-109 ‰ ± 3.65) and the n-alkane series (C-19 to C-31). Significant differences are reportedly driven by the differences in habitat: more depleted δ<sup>2</sup>H values were found in SOM produced in the open pasture than under the tree canopy. In addition, a δ<sup>2</sup>H enrichment is observed for lignin-derived compounds in SOM under the W+D treatment.</p><p>The technique used and tested is expected to bring novelty results in relation to the processes affecting the isotopic composition of non-exchangeable hydrogen exerted by climatic treatments on diverse SOM specific compounds. Besides presenting the analytical challenges that are faced, we will discuss the effects of canopy and climatic treatments to tackle potential harsh climatic conditions as predicted, especially in Mediterranean areas. </p><p><strong>Acknowledgement:</strong> INTERCARBON project (CGL2016-78937-R), DECAFUN (CGL2015-70123-R). MICIU for funding FPI research grants (BES-2017-07968). Mrs Desiré Monis, Mrs Alba M. Carmona & Mr Eduardo Gutiérrez González are acknowledged for technical assistance.</p><p>[1] Paul, A. et al (2016). <em>Biogeosciences, 13</em>, 6587–6598.</p><p>[2] Seki, O. et al (2010). <em>Geochimica et Cosmochimica Acta, 74</em>(2), 599-613.</p>


2012 ◽  
Vol 42 (11) ◽  
pp. 1953-1964 ◽  
Author(s):  
Irene Fernandez ◽  
Juan Gabriel Álvarez-González ◽  
Beatríz Carrasco ◽  
Ana Daría Ruíz-González ◽  
Ana Cabaneiro

Forest ecosystems can act as C sinks, thus absorbing a high percentage of atmospheric CO2. Appropriate silvicultural regimes can therefore be applied as useful tools in climate change mitigation strategies. The present study analyzed the temporal changes in the effects of thinning on soil organic matter (SOM) dynamics and on soil CO2 emissions in radiata pine ( Pinus radiata D. Don) forests. Soil C effluxes were monitored over a period of 2 years in thinned and unthinned plots. In addition, soil samples from the plots were analyzed by solid-state 13C-NMR to determine the post-thinning SOM composition and fresh soil samples were incubated under laboratory conditions to determine their biodegradability. The results indicate that the potential soil C mineralization largely depends on the proportion of alkyl-C and N-alkyl-C functional groups in the SOM and on the microbial accessibility of the recalcitrant organic pool. Soil CO2 effluxes varied widely between seasons and increased exponentially with soil heating. Thinning led to decreased soil respiration and attenuation of the seasonal fluctuations. These effects were observed for up to 20 months after thinning, although they disappeared thereafter. Thus, moderate thinning caused enduring changes to the SOM composition and appeared to have temporary effects on the C storage capacity of forest soils, which is a critical aspect under the current climatic change scenario.


2021 ◽  
Author(s):  
Iva Hrelja ◽  
Ivana Šestak ◽  
Igor Bogunović

<p>Spectral data obtained from optical spaceborne sensors are being recognized as a valuable source of data that show promising results in assessing soil properties on medium and macro scale. Combining this technique with laboratory Visible-Near Infrared (VIS-NIR) spectroscopy methods can be an effective approach to perform robust research on plot scale to determine wildfire impact on soil organic matter (SOM) immediately after the fire. Therefore, the objective of this study was to assess the ability of Sentinel-2 superspectral data in estimating post-fire SOM content and comparison with the results acquired with laboratory VIS-NIR spectroscopy.</p><p>The study is performed in Mediterranean Croatia (44° 05’ N; 15° 22’ E; 72 m a.s.l.), on approximately 15 ha of fire affected mixed <em>Quercus ssp.</em> and <em>Juniperus ssp.</em> forest on Cambisols. A total of 80 soil samples (0-5 cm depth) were collected and geolocated on August 22<sup>nd</sup> 2019, two days after a medium to high severity wildfire. The samples were taken to the laboratory where soil organic carbon (SOC) content was determined via dry combustion method with a CHNS analyzer. SOM was subsequently calculated by using a conversion factor of 1.724. Laboratory soil spectral measurements were carried out using a portable spectroradiometer (350-1050 nm) on all collected soil samples. Two Sentinel-2 images were downloaded from ESAs Scientific Open Access Hub according to the closest dates of field sampling, namely August 31<sup>st</sup> and September 5<sup>th </sup>2019, each containing eight VIS-NIR and two SWIR (Short-Wave Infrared) bands which were extracted from bare soil pixels using SNAP software. Partial least squares regression (PLSR) model based on the pre-processed spectral data was used for SOM estimation on both datasets. Spectral reflectance data were used as predictors and SOM content was used as a response variable. The accuracy of the models was determined via Root Mean Squared Error of Prediction (RMSE<sub>p</sub>) and Ratio of Performance to Deviation (RPD) after full cross-validation of the calibration datasets.</p><p>The average post-fire SOM content was 9.63%, ranging from 5.46% minimum to 23.89% maximum. Models obtained from both datasets showed low RMSE<sub>p </sub>(Spectroscopy dataset RMSE<sub>p</sub> = 1.91; Sentinel-2 dataset RMSE<sub>p</sub> = 0.99). RPD values indicated very good predictions for both datasets (Spectrospcopy dataset RPD = 2.72; Sentinel-2 dataset RPD = 2.22). Laboratory spectroscopy method with higher spectral resolution provided more accurate results. Nonetheless, spaceborne method also showed promising results in the analysis and monitoring of SOM in post-burn period.</p><p><strong>Keywords:</strong> remote sensing, soil spectroscopy, wildfires, soil organic matter</p><p><strong>Acknowledgment: </strong>This work was supported by the Croatian Science Foundation through the project "Soil erosion and degradation in Croatia" (UIP-2017-05-7834) (SEDCRO). Aleksandra Perčin is acknowledged for her cooperation during the laboratory work.</p>


2021 ◽  
Author(s):  
Hannah Binner ◽  
Timothy Sullivan ◽  
Maria E. Mc Namara

<p>Soil contamination is widespread across Europe. In particular, contamination of urban soils by metals is poorly characterised. This is a major environmental concern, especially given that urban recreational amenities may be located on former industrial sites and/or may possess ex situ soils derived from industrial areas. We surveyed soils from nine urban recreational sites (15 samples per site) in Cork city in order to assess the degree of metal contamination. The results show that Pb concentrations exceed national background levels in all soil samples from all sites by a mean of 600 % and at least 140 %. Mn, Fe and Zn are enriched above background levels in all soil samples from three (Mn and Fe) to five (Zn) of the sites and, at the remaining sites, show 7 – 14 localised hotspots. Similar hotspots characterise Cu, Rb and Sr, which each exceed background levels at eight or more sampling locations at four sites. Co, Ni, As and Sn concentrations exceed background levels in at least three hotspots at each of three to six sites. Overall, metal concentrations are highest in the sites closest to the city centre, reflecting diverse sources that potentially include traffic and current and historical domestic coal burning and industry. At each urban site, the element grouping Zn and Pb recurs in 50 to 80 % of locations and enrichment in the element grouping Mn, Fe, Cu, Zn and Pb recurs in approx. 50 % of locations; Ni and As recur in approx. 10 % of the locations. At three sites, elevated concentrations of Mn, Fe, Cu, Zn and Pb are associated with high LOI (Loss-on-ignition) values – a proxy for the amount of soil organic matter present – and near-neutral pH values. Conversely, low LOI and acidic pH values are associated with lower concentrations of these elements. This indicates that soil metal concentrations are influenced by the amount of organic matter present and by pH.  Future analyses and experiments will further investigate links between soil organic matter and metal concentrations.</p>


2014 ◽  
Vol 11 (12) ◽  
pp. 3299-3305 ◽  
Author(s):  
C. Rumpel ◽  
V. Chaplot ◽  
P. Ciais ◽  
A. Chabbi ◽  
B. Bouahom ◽  
...  

Abstract. In order to assess whether eroded carbon is a net source or sink of atmospheric CO2, characterisation of the chemical composition and residence time of eroded organic matter (EOM) at the landscape level is needed. This information is crucial to evaluate (1) how fast EOM can be decomposed by soil microbes during its lateral transport and (2) its impact at deposition sites. This study considers a continuum of scales to measure the composition of EOM across a steep hillslope landscape of the Mekong basin with intense erosion. We sampled suspended sediments eroded during rainfall events from runoff plots (1 and 2.5 m2) and the outlets of four nested watersheds (0.6 × 104 to 1 × 107 m2). Here we show that changes in the chemical composition of EOM (measured by nuclear magnetic resonance spectroscopy) and in its 13C and 15N isotope composition from plot scale through to landscape scale provide consistent evidence for enrichment of more decomposed EOM across distances of 10 km. Between individual soil units (1 m2) to a small watershed (107 m2), the observed 28% decrease of the C/N ratio, the enrichment of 13C and 15N isotopes as well as O-alkyl C in EOM is of similar magnitude as changes recorded with depth in soil profiles due to soil organic matter "vertical" decomposition. Radiocarbon measurements indicated ageing of EOM from the plot to the watershed scale. Therefore transport of EOM may lead to enrichment of stabilised soil organic matter compounds, eventually being subject to export from the watershed.


2018 ◽  
Author(s):  
Franz Conen ◽  
Mikhail V. Yakutin

Abstract. Soil organic matter carries ice nucleating particles (INP) of which the origin is hard to define and that are active at slight supercooling. The discovery and characterisation of INP produced by the widespread soil fungus Mortierella alpina permits a more targeted investigation of the likely origin of INP in soils. We searched for INP with characteristics similar to those reported for M. alpina (INPM-like) in 20 soil samples from four areas in the northern midlatitudes and one area in the tropics. In the 15 samples where we could detect INPM-like, they constituted between 1 and 94 % (median 11 %) of all INP active at −10 °C or warmer associated with soil particles


2012 ◽  
Vol 58 (4) ◽  
pp. 131-137
Author(s):  
Vladimír Šimanský ◽  
Erika Tobiašová

Abstract The effect of different doses of NPK fertilizer on the changes in quantity and quality of soil organic matter (SOM) in Rendzic Leptosol was evaluated. Soil samples were taken from three treatments of different fertilization: (1) control - without fertilization, (2) NPK 1 - doses of NPK fertilizer in 1st degree intensity for vine, and (3) NPK 3 - doses of NPK fertilizer in 3rd degree intensity for vine in the vineyard. Soil samples were collected in years 2008-2011 during the spring. The higher dose of NPK fertilizer (3rd degree intensity of vineyards fertilization) was responsible for the higher content of labile carbon (by 21% in 0-0.3 m and by 11% as average of the two depths 0-0.3 m and 0.3-0.6 m). However, by application of a higher dose of NPK (1.39%) in comparison to no fertilizer treatment (1.35%) or NPK 1 (1.35%) the tendency of total organic carbon content increase and hot-water soluble carbon decrease were determined. Fertilization had a negative effect on SOM stability. Intensity of fertilization affected the changes in quantity and quality of SOM; therefore it is very important to pay attention to the quantity and quality of organic matter in productive vineyards.


Radiocarbon ◽  
1977 ◽  
Vol 19 (2) ◽  
pp. 170-182 ◽  
Author(s):  
H W Scharpenseel ◽  
H Schiffmann

Radiocarbon measurements mainly on soil samples and soil organic matter fractions are being continued. Sample benzene preparation follows Scharpenseel & Pietig (1969; 1970a). Radioactivity is measured in single screw cap quartz vials using a Packard Tri-Carb 3075 as well as a Berthold Betaszint BF 5000.


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