Low molecular weight organic anions (carboxylates) increase microbial activity and alter microbial community composition in uncontaminated and diesel contaminated soil

2016 ◽  
Author(s):  
Anonymous
2011 ◽  
Vol 77 (8) ◽  
pp. 2791-2795 ◽  
Author(s):  
Johannes Rousk ◽  
Philip C. Brookes ◽  
Helen C. Glanville ◽  
David L. Jones

ABSTRACTWe studied how soil pH (pHs 4 to 8) influenced the mineralization of low-molecular-weight (LMW)-dissolved organic carbon (DOC) compounds, and how this compared with differences in microbial community structure. The mineralization of LMW-DOC compounds was not systematically connected to differences in soil pH, consistent with soil respiration. In contrast, the microbial community compositions differed dramatically. This suggests that microbial community composition data will be of limited use in improving the predictive power of soil C models.


2016 ◽  
Author(s):  
Belinda C. Martin ◽  
Suman J. George ◽  
Charles A. Price ◽  
Esmaeil Shahsavari ◽  
Andrew S. Ball ◽  
...  

Abstract. Petroleum hydrocarbons (PHCs) are among the most prevalent sources of environmental contamination. It has been hypothesized that plant root exudation of low molecular weight organic acid anions (carboxylates) may aid degradation of PHCs by stimulating heterotrophic microbial activity. We, therefore, applied two commonly-exuded carboxylates (citrate and malonate) to uncontaminated and diesel contaminated microcosms (10,000 mg kg−1; aged 40 days) to determine their impact on the microbial community and PHC degradation. Every 48 hours for 18 days, soil received 5 µmol g−1 of i) citrate, ii) malonate, iii) citrate + malonate or iv) water. Microbial activity was measured daily as the flux of CO2. After 18 days, changes in the microbial community were assessed by community level physiological profiles and 16S rRNA bacterial community profiles determined by denaturing gradient gel electrophoresis. Saturated PHCs remaining in the soil were assessed by GC-MS. Cumulative soil respiration increased four- to six-fold with the addition of carboxylates, while diesel contamination resulted in a small, but similar, increase across all carboxylate treatments. The addition of carboxylates resulted in distinct changes to the microbial community, but only a small decrease in the n-C17: pristane biomarker. We conclude that carboxylate addition can increase microbial activity and modify the microbial community in both uncontaminated and diesel-contaminated soils. The impact of these changes on PHC biodegradation and rhizosphere processes, more generally, merits further research.


2005 ◽  
Vol 167 (1-4) ◽  
pp. 111-122 ◽  
Author(s):  
Shuzhen Zhang ◽  
Wei Li ◽  
Xiao-Quan Shan ◽  
Anxiang Lu ◽  
Peijiang Zhou

2021 ◽  
Author(s):  
Sven P. Tobias-Hünefeldt ◽  
Stephen R. Wing ◽  
Federico Baltar ◽  
Sergio E. Morales

Abstract Fjords are semi-enclosed marine systems with unique physical conditions that influence microbial community composition and structure. Pronounced organic matter and physical condition gradients within fjords provide a natural laboratory for the study of changes in microbial phylogeny and metabolic potential in response to environmental conditions. Photosynthetic production in euphotic zones sustains deeper aphotic microbial activity via organic matter sinking, augmented by large terrestrial inputs. We profiled microbial functional potential (Biolog Ecoplates), bacterial abundance, heterotrophic production (3H-Leucine incorporation), and prokaryotic/eukaryotic community composition (16S and 18S rRNA amplicon gene sequencing) to link metabolic potential, activity, and community composition to known community drivers. Similar factors shaped metabolic potential, activity and community (prokaryotic and eukaryotic) composition across surface/near surface sites. However, increased metabolic diversity at near bottom (aphotic) sites reflected an organic matter influence from sediments. Photosynthetically produced particulate organic matter shaped the upper water column community composition and metabolic potential. In contrast, microbial activity at deeper aphotic waters were strongly influenced by other organic matter imput than sinking marine snow (e.g. sediment resuspension of benthic organic matter, remineralisation of terrestrially derived organic matter, etc.), severing the link between phylogeny and metabolic potential. Taken together, different organic matter sources shape microbial activity, but not community composition, in New Zealand fjords.


2017 ◽  
Vol 121 ◽  
pp. 185-192 ◽  
Author(s):  
Jianzhong Cheng ◽  
Xinqing Lee ◽  
Weichang Gao ◽  
Yi Chen ◽  
Wenjie Pan ◽  
...  

2021 ◽  
Author(s):  
Wei Li ◽  
Wenbin Li ◽  
Lijun Xing ◽  
Shaoxia Guo

Abstract In order to determine the influence of arbuscular mycorrhizal fungi (AMF, Glomus versiforme) and plant growth-promoting rhizobacteria (PGPR, Pseudomonas fluorescens, Ps2-6) on degradation of phenanthrene (PHE) and pyrene (PYR) and the change of microbial community composition in soils planted with tall fescue (Festuca elata), four treatments were set up in phenanthrene (PHE) and pyrene (PYR) contaminated soil: tall fescue (CK), AMF + tall fescue (GV), PGPR + tall fescue (PS), and AMF + PGPR + tall fescue (GVPS). Our results showed that the highest removal percentage of PHE and PYR in contaminated soil as well as biomass of tall fescue were observed in GVPS. PHE and PYR accumulation by tall fescue roots were higher than shoots, the mycorrhizal status was best manifested in the roots of tall fescue inoculated with GVPS, and GVPS significantly increased the number of PGPR proliferation in tall fescue rhizosphere soil. Paired-end Illumina HiSeq analysis of the 16S rRNA gene and Internal Transcribed Spacer (ITS) region sequences was used to assess changes in the bacterial and fungal communities composition of the four treatments. GVPS positively affected the species and abundance of bacteria and fungi in PHE and PYR contaminated soil, an average of 71,144 high quality bacterial 16S rDNA tags and 102,455 ITS tags were obtained in GVPS, and all of them were assigned to 6,327 and 825 operational taxonomic units (OTUs) at a 97% similarity, respectively. Sequence analysis revealed that Proteobacteria was the dominant bacterial phylum, Ascomycota was the dominant fungal phylum in all treatments, whereas Proteobacteria and Glomeromycota were the most prevalent bacterial and fungal phyla in GVPS, respectively. And in the generic level, Planctomyces and Meyerozyma were the richest bacterial and fungal genus in all treatments, respectively, whereas Sphingomonas and Fusarium were the dominant bacterial and fungi genus in GVPS. Overall, our findings revealed that application of Glomus versiforme and Pseudomonas fluorescens, Ps2-6 had an effective role in improving the growth characteristics, root infection of F. elata and soil microbial community composition in PHE and PYR contaminated soils, but no obvious in degradation efficiencies of PHE and PYR as compared to the control.


2006 ◽  
Vol 38 (6) ◽  
pp. 1430-1437 ◽  
Author(s):  
Nicola Lorenz ◽  
Therese Hintemann ◽  
Tanja Kramarewa ◽  
Arata Katayama ◽  
Tsuyoshi Yasuta ◽  
...  

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