scholarly journals Atlantic Forest fragmentation affects the genetic variation distribution pattern in blue manakins, Chiroxiphia caudata (Aves, Pipridae)

Author(s):  
Leonardo P. Niero ◽  
Mercival R. Francisco ◽  
Bruno H. Saranholi ◽  
Luis F. Silveira ◽  
Pedro M. Galetti Jr

Habitat fragmentation is one of the main threats to the biodiversity and one of the main challenges faced by conservation biology. This study assessed the effects of habitat fragmentation on the genetic variability of the blue manakin Chiroxiphia caudata, an endemic bird of Atlantic Forest biome. Nine microsatellite loci were used to analyze individuals from five Atlantic Forest areas. Private alleles were found in all areas. Fst, Dest, Bayesian and Discriminant analysis of principal components (DAPC) indicated that populations are genetically structured, but the distance could not explain the differentiation between areas. The fragmentation and the reduction of gene flow may be acting in order to increase the differentiation between areas. Thus, even a generalist species may be affected by habitat fragmentation. Despite this, the whole complex of fragmented areas in Atlantic Forest appears to play an important role for the blue manakin by sheltering its genetic diversity as a whole.

2018 ◽  
Author(s):  
Leonardo P. Niero ◽  
Mercival R. Francisco ◽  
Bruno H. Saranholi ◽  
Luis F. Silveira ◽  
Pedro M. Galetti Jr

Habitat fragmentation is one of the main threats to the biodiversity and one of the main challenges faced by conservation biology. This study assessed the effects of habitat fragmentation on the genetic variability of the blue manakin Chiroxiphia caudata, an endemic bird of Atlantic Forest biome. Nine microsatellite loci were used to analyze individuals from five Atlantic Forest areas. Private alleles were found in all areas. Fst, Dest, Bayesian and Discriminant analysis of principal components (DAPC) indicated that populations are genetically structured, but the distance could not explain the differentiation between areas. The fragmentation and the reduction of gene flow may be acting in order to increase the differentiation between areas. Thus, even a generalist species may be affected by habitat fragmentation. Despite this, the whole complex of fragmented areas in Atlantic Forest appears to play an important role for the blue manakin by sheltering its genetic diversity as a whole.


1998 ◽  
Vol 46 (6) ◽  
pp. 671 ◽  
Author(s):  
G. J. Starr ◽  
S. M. Carthew

Fragmentation of the landscape by human activity has created small, isolated plant populations. Hakea carinata F. Muell. ex Meissner, a sclerophyllous shrub, is common in isolated fragments of vegetation in South Australia. This study investigated whether habitat fragmentation has caused restrictions to gene flow between populations. Gene diversity (HT = 0.317) is average for similar species but little is held within populations (HS = 0.168) and 46.9% of gene diversity is accounted for between populations. Estimates of gene flow are NM = 0.270 (based on FST) and NM = 0.129 (based on private alleles). Populations are substantially selfing (t = 0.111). Small isolated populations appears to be a long-term evolutionary condition in this species rather than a consequence of habitat fragmentation; however, population extinctions are occurring. Conservation will require the reservation of many populations to represent the genetic variation present in the species.


2021 ◽  
Vol 9 ◽  
Author(s):  
Heather R. Kates ◽  
Fernando López Anido ◽  
Guillermo Sánchez-de la Vega ◽  
Luis E. Eguiarte ◽  
Pamela S. Soltis ◽  
...  

Studies of domestication genetics enrich our understanding of how domestication shapes genetic and morphological diversity. We characterized patterns of genetic variation in two independently domesticated pumpkins and their wild progenitors to assess and compare genetic consequences of domestication. To compare genetic diversity pre- and post-domestication and to identify genes targeted by selection during domestication, we analyzed ∼15,000 SNPs of 48 unrelated accessions, including wild, landrace, and improved lines for each of two pumpkin species, Cucurbita argyrosperma and Cucurbita maxima. Genetic diversity relative to its wild progenitor was reduced in only one domesticated subspecies, C. argyrosperma ssp. argyrosperma. The two species have different patterns of genetic structure across domestication status. Only 1.5% of the domestication features identified for both species were shared between species. These findings suggest that ancestral genetic diversity, wild-crop gene flow, and domestication practices shaped the genetic diversity of two similar Cucurbita crops in different ways, adding to our understanding of how genetic diversity changes during the processes of domestication and how trait improvement impacts the breeding potential of modern crops.


2017 ◽  
Author(s):  
Priscila T. Rodrigues ◽  
Hugo O. Valdivia ◽  
Thais C. de Oliveira ◽  
João Marcelo P. Alves ◽  
Ana Maria R. C. Duarte ◽  
...  

AbstractBackgroundThe Americas were the last continent to be settled by modern humans, but how and when human malaria parasites arrived in the New World is uncertain. Here, we apply phylogenetic analysis and coalescent-based gene flow modeling to a global collection of Plasmodium falciparum and P. vivax mitogenomes to infer the demographic history and geographic origins of malaria parasites circulating in the Americas. Importantly, we examine P. vivax mitogenomes from previously unsampled forest-covered sites along the Atlantic Coast of Brazil, including the vivax-like species P. simium that locally infects platyrrhini monkeys.ResultsThe best-supported gene flow models are consistent with migration of both malaria parasites from Africa and South Asia to the New World, with no genetic signature of a population bottleneck upon parasite's arrival in the Americas. We found evidence of additional gene flow from Melanesia in P. vivax (but not P. falciparum) mitogenomes from the Americas and speculate that some P. vivax lineages might have arrived with the Australasian peoples who contributed genes to Native Americans in pre-Columbian times. Mitochondrial haplotypes characterized in P. simium from monkeys from the Atlantic Forest are shared by local humans. These vivax-like lineages have not spread to the Amazon Basin, are much less diverse than P. vivax circulating elsewhere in Brazil, and show no close genetic relatedness with P. vivax populations from other continents.ConclusionsEnslaved peoples brought from a wide variety of African locations were major carriers of P. falciparum mitochondrial lineages into the Americas, but additional human migration waves are likely to have contributed to the extensive genetic diversity of present-day New World populations of P. vivax. The reduced genetic diversity of vivax-like monkey parasites, compared with human P. vivax from across this country, argues for a recent human-to-monkey transfer of these lineages in the Atlantic Forest of Brazil.Author summaryMalaria is currently endemic to the Americas, with over 400,000 laboratory-confirmed infections reported annually, but how and when human malaria parasites entered this continent remains largely unknown. To determine the geographic origins of malaria parasites currently circulating in the Americas, we examined a global collection of Plasmodium falciparum and P. vivax mitochondrial genomes, including those from understudied isolates of P. vivax and P. simium, a vivax-like species that infect platyrrhini monkeys, from the Atlantic Forest of Brazil. We found evidence of significant historical migration to the New World of malaria parasites from Africa and, to a lesser extent, South Asia, with further genetic contribution of Melanesian lineages to South American P. vivax populations. Importantly, mitochondrial haplotypes of P. simium are shared by monkeys and humans from the Atlantic Forest, most likely as a result of a recent human-to-monkey transfer. Interestingly, these potentially zoonotic lineages are not found in the Amazon Basin, the main malaria-endemic area in the Americas. We conclude that enslaved Africans were the main carriers of P. falciparum mitochondrial lineages into the Americas, whereas additional migration waves of Australasian peoples and parasites may have contributed to the genetic makeup of present-day New World populations of P. vivax.


Check List ◽  
2016 ◽  
Vol 12 (5) ◽  
pp. 1967 ◽  
Author(s):  
Débora R. de Souza-Campana ◽  
Otávio G. M. da Silva ◽  
Leonardo Menino ◽  
Maria Santina de C. Morini

Urban parks offer refuge for numerous animal species, and some of these parks represent the remaining fragments of native forests. We evaluate the diversity and composition of epigaeic ant species (Hymenoptera: Formicidae) in urban parks located within the Atlantic Forest biome (Centenial Park, Leon Feffer Park and Villa Lobos Park). For our collections, we placed pitfall traps along 100-m line transects in areas both accessible and inaccessible to the public. A total of 46 species distributed in seven subfamilies were collected. The number of species did not differ among park areas, but the ant communities themselves differed. Native species, such as Strumigenys denticulata and S. louisianae, were collected in the most preserved natural areas in the parks. Generalist species composed the richest guild and were primarily found in areas with public access. Wasmannia auropunctata, Brachymyrmex heeri, Solenopsis sp. 2, and Solenopsis sp. 3 were classified with high value as biological indicators. 


2018 ◽  
Vol 49 (3) ◽  
pp. 113-122
Author(s):  
Wei Wang ◽  
Kun Lv ◽  
Ji‐Rui Wang ◽  
Jing Zhou ◽  
Jian‐Qiang Gu ◽  
...  

2020 ◽  
Author(s):  
Raquel Pino-Bodas ◽  
Soili Stenroos

Abstract The diversity of lichen photobionts is not fully known. We studied here the diversity of the photobionts associated with Cladonia, a sub-cosmopolitan genus ecologically important, whose photobionts belong to the green algae genus Asterochloris. The genetic diversity of Asterochloris was screened by using the ITS rDNA and actin type I regions in 223 specimens and 135 species of Cladonia collected all over the world. These data, added to those available in GenBank, were compiled in a dataset of altogether 545 Asterochloris sequences occurring in 172 species of Cladonia. A high diversity of Asterochloris associated with Cladonia was found. The commonest photobiont lineages associated with this genus are A. glomerata, A. italiana, and A. mediterranea. Analyses of partitioned variation were carried out in order to elucidate the relative influence on the photobiont genetic variation of the following factors: mycobiont identity, geographic distribution, climate, and mycobiont phylogeny. The mycobiont identity and climate were found to be the main drivers for the genetic variation of Asterochloris. The geographical distribution of the different Asterochloris lineages was described. Some lineages showed a clear dominance in one or several climatic regions. In addition, the specificity and the selectivity were studied for 18 species of Cladonia. Potentially specialist and generalist species of Cladonia were identified. A correlation was found between the sexual reproduction frequency of the host and the frequency of certain Asterochloris OTUs. Some Asterochloris lineages co-occur with higher frequency than randomly expected in the Cladonia species.


2007 ◽  
Vol 53 (2) ◽  
pp. 179-196 ◽  
Author(s):  
Alan R. Templeton ◽  
Jennifer L. Neuwald ◽  
Hilary Brazeal ◽  
R. James Robertson

Habitat fragmentation is one of the more important contributors to species endangerment, but one form of fragmentation, here called dispersal fragmentation, can often go unobserved for many years after it has occurred. Many species live in naturally fragmented habitats, but the local populations are interconnected genetically and demographically by dispersal through the environmental matrix in which the habitats are embedded. Because of dispersal, the local populations are not truly fragmented evolutionarily or ecologically. However, when human activities alter the environmental matrix such that dispersal is no longer possible, the population does indeed become fragmented even though they initially are present in the same habitats. An example of dispersal fragmentation via an altered environmental matrix is provided by the eastern collared lizard (Crotaphytus collaris collaris). This lizard lives on open, rocky habitats, called glades, that are embedded in the forests of the Ozarks, a highland region located primarily in Missouri and Arkansas in the USA. Forest fire suppression has reduced this habitat, resulting in severe habitat fragmentation, disruption of gene flow, loss of genetic variation within glade populations, and local extinction without recolonization. Beginning in 1982, glade habitats were restored by clearing and burning in the Peck Ranch area of the Missouri Ozarks, a region where the lizards had gone extinct. Starting in 1984, lizard populations were translocated from other Missouri glades onto restored glades at the Peck Ranch. Although these translocated populations survived well on the restored glades, no movement was detected between glades, some just 50 m apart, and no colonization of nearby restored glades, some just 60 m away, occurred between 1984 and 1993. Fragmentation, lack of colonization, no gene flow, and loss of genetic variation still persisted despite translocation reversing some of the local extinction. Fire scar data from trees and tree stumps indicated that forest fires were common in this area prior to European settlement, so in 1994 a new management policy of prescribed burning of both the glades and their forest matrix was initiated. Once the forest had been burned, the lizards could disperse kilometers through the forest, thereby reestablishing the processes of dispersal, gene flow, colonization, and local extinction followed by recolonization. This resulted in a dramatic increase in population size and inhabited area. By incorporating a landscape perspective into the management strategy, the eastern collared lizard has been successfully reestablished in a region of historic extirpation.


2002 ◽  
Vol 50 (1) ◽  
pp. 93 ◽  
Author(s):  
Alison Shapcott

Triunia robusta, which until recently was thought to be extinct, is now classified nationally as endangered. It is an understorey species restricted to the subcoastal rainforests in a small region of the Sunshine Coast, Queensland. The project involved sampling the genetic variation and measuring the population size and size distribution of T. robusta and its geographically closest congener T. youngiana, which occurs further south and has a wider geographic distribution. A total of 877 T. robusta plants were recorded across the 11 populations, approximately half (56.8%) of these were juveniles less than 1 m tall, whereas in T. youngiana only about 36.4% of a population was composed of juveniles. Genetic diversity was similar but significantly higher for T. robusta than T. youngiana if the very small T. robusta populations (2 or 3 plants) were excluded from analysis (P < 0.05). The mean percentage of polymorphic loci among populations was high for both species. Triunia robusta is not, on average, more inbred than the more common T. youngiana. There was more differentiation between the T. robusta populations, which were in close proximity, than between the more geographically separated T. youngiana populations. Thus, there is evidence of more gene flow between populations of T. youngiana than between those of T. robusta. However, there was no geographic relationship between genetic similarity and geographic proximity in T. robusta


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