Initial Succession After Wildfire in Dry Boreal Forests of Northwestern North America

Wildfires in the boreal forest of North America are generally stand renewing, with the initial phase of vegetation recovery often governing the vegetation trajectory for decades. Here, we investigate post-fire vegetation changes in dry boreal forests of the Northwest Territories, Canada, during the first five years following the unusually severe 2014 wildfire season. We sampled post-fire tree regeneration and the overall plant community at one, three, and five years post-fire across different fire severities and stand types within fires that burned in 2014. Post-fire trajectories of tree recruitment, cover by plant functional types, and plant diversity varied widely among sampled stands, as well as among years post-fire. Tree seedling density reaches relative equilibrium by three years post-fire, whereas trends in understory plant cover and understory species assemblages suggest an ongoing change that will extend beyond five years of observation. In almost half of sampled stands, the composition of recruited trees differs from that of the pre-fire stand, suggesting a change in tree-species dominance. An analysis of regional climate reveals a significant, albeit spatially variable, warming and drying trend that will further accelerate forest-stand transformation through both climate drivers of plant community composition and indirectly through increasing fire activity. While the 2014 wildfires enhanced the structural and compositional heterogeneity of the region, they also triggered vegetation changes that are likely to be persistent. As such, this study exemplifies the speed and variability that characterizes post-fire stand development in a strongly moisture-limited part of North America.

Directional Selection on Tree Seedling Traits Driven by Experimental Drought Differs Between Mesic and Dry Populations

We evaluated population differences and drought-induced phenotypic selection on four seedling traits of the Australian forest tree Eucalyptus pauciflora using a glasshouse dry-down experiment. We compared dry and mesic populations and tested for directional selection on lamina length (reflecting leaf size), leaf shape, the node of ontogenetic transition to the petiolate leaf (reflecting the loss of vegetative juvenility), and lignotuber size (reflecting a recovery trait). On average, the dry population had smaller and broader leaves, greater retention of the juvenile leaf state and larger lignotubers than the mesic population, but the populations did not differ in seedling survival. While there was statistical support for directional selection acting on the focal traits in one or other population, and for differences between populations in selection gradient estimates for two traits, only one trait—lamina length—exhibited a pattern of directional selection consistent with the observed population differences being a result of past adaptation to reduce seedling susceptibility to acute drought. The observed directional selection for lamina length in the mesic population suggests that future increases in drought risk in the wild will shift the mean of the mesic population toward that of the dry population. Further, we provide evidence suggesting an early age trade-off between drought damage and recovery traits, with phenotypes which develop larger lignotubers early being more susceptible to drought death. Such trade-offs could have contributed to the absence of population mean differences in survival, despite marked differentiation in seedling traits.

Morpho-Anatomical Traits and Soluble Sugar Concentration Largely Explain the Responses of Three Deciduous Tree Species to Progressive Water Stress

A better understanding of plant drought responses is essential to improve plant water use efficiency, productivity, and resilience to ever-changing climatic conditions. Here, we investigated the growth, morpho-anatomical, physiological, and biochemical responses of Quercus acutissima Carruth., Quercus serrata Murray, and Betula schmidtii Regel to progressive water-stress. Seedlings were subjected to well-watered (WW) and water-stressed (WS) conditions while regularly monitoring the soil volumetric water content, stem diameter (SD), height, biomass, stomatal conductance (gs), intercellular CO2 concentration (Ci), and leaf relative water content (RWC). We also investigated the variation in stomatal pore (SP) area, specific leaf area (SLA), root xylem vessel diameter (VD), and total soluble sugar (TSS) concentration between treatments. After 2 months, WS significantly suppressed SD growth of Q. acutissima and B. schmidtii but had no impact on Q. serrata. Total biomass significantly declined at WS-treated seedlings in all species. WS resulted in a smaller SLA than WW in all species. The SP of WS-treated seedlings of Q. acutissima and B. schmidtii significantly decreased, whereas it increased significantly with time in Q. serrata. Larger vessels (i.e., >100 to ≤ 130) were more frequent at WS for Q. acutissima and B. schmidtii, whereas smaller vessels (i.e., >40 to ≤ 90) were more frequent at WS than at WW for Q. serrata after 8 weeks. Tylosis was more frequent at WS than WW for Q. serrata and B. schmidtii at eighth week. WS seedlings showed lower gs, Ci, and RWC compared with WW-treated ones in Q. acutissima and B. schmidtii. TSS concentration was also higher at WS-treated seedlings in two Quercus species. Overall, principal component analysis (PCA) showed that SLA and SP are associated with WS seedlings of Q. serrata and B. schmidtii and the tylosis frequency, TSS, and VD are associated with WS seedlings of Q. acutissima. Therefore, water-stressed plants from all species responded positively to water stress with increasing experimental duration and stress intensity, and that is largely explained by morpho-anatomical traits and soluble sugar concentration. The present study should enhance our understanding of drought-induced tree growth and short-term tree-seedling responses to drought.

Identification of a New Badnavirus in the Chinaberry (Melia azedarach) Tree and Establishment of a LAMP-LFD Assay for Its Rapid and Visual Detection

The Chinaberry tree, a member of the Meliaceae family, is cultivated in China for use in traditional medicines. In 2020, Chinaberry trees with leaf deformation symptoms were found in Hangzhou, Zhejiang province, China. In order to identify possible pathogenic viruses, a symptomatic sample was subjected to deep sequencing of small interfering RNAs. Assembly of the resulting sequences led to the identification of a novel badnavirus, provisionally designated Chinaberry tree badnavirus 1 (ChTBV1). With the recent development of China’s seedling industry and increasing online shopping platforms, the risk of tree virus transmission has increased substantially. Therefore, it is important to detect the occurrence of ChTBV1 to ensure the safety of the Chinaberry tree seedling industry. Here, we describe the development and validation of a sensitive and robust method relying on a loop-mediated isothermal amplification (LAMP) assay, targeting a 197 nt region, to detect ChTBV1 from Chinaberry tree leaves. The LAMP assay was also adapted for rapid visualization of results by a lateral flow dipstick chromatographic detection method.

Evidence for alternate stable states in an Ecuadorian Andean Cloud Forest

We analyzed a set of historical data from rapid vegetation inventories in a tropical montane cloud forest in northern Andean Ecuador. Trees in plots from several types of forest were counted and measured, including: (1) primary forest, including mature and recently closed-canopy sites and naturally formed gaps, (2) abandoned pasture, and (3) abandoned, intensively-farmed sites. The goal of the study was to understand in a specific period of time the similarities and differences among natural and anthropogenic disturbances and their potential long term effect on the forest plant community. We found that mature and intermediate close canopy sites are similar. Primary forest sites were observed as resilient to gap-forming disturbances: naturally-formed gaps are quickly colonized by old-forest-associated plant species, and return to an old-forest-type community of trees in a short time. In contrast, forests regenerating from anthropogenic disturbance appear to have multiple possible states: some regenerating forest sites where the anthropogenic disturbance were low are coming to closely resemble old-forest-type communities, but some where the anthropogenic disturbance was intense appear to be changing in a very different direction, which does not resemble any other vegetation community type currently in the forest. A major predictor of present ecological state is the type of land use before reforestation: pastures can occasionally transition back to the pre-disturbance state of forest. More intensively used sites were not observed to return to a pre-disturbance ecological state, instead forming a new and different kind of forest, dominated by a different community of trees. We examined tree-seedling communities to understand the trajectory of the forest into the future, and find that new forest types may be forming that do not resemble any existing associations. We also found that Los Cedros is extremely diverse in tree species. We estimate approximately 500 species of tree in only the small southeastern area of the reserve that has been explored scientifically. Additionally, the forest tree community shows extremely rapid distance decay (beta-diversity), approaching near complete turn-over in the limited spatial extent of the study. This suggests that many of other tree species remain to be observed in the reserve, in addition to the 350+ that are directly observed in the present study, including new observations of species with IUCN threatened-endangered status. We also highlight the conservation value of Reserva Los Cedros, which has managed to reverse deforestation within its boundaries despite a general trend of extensive deforestation in the surrounding region, and to protect large, contiguous areas of highly-endangered Andean primary cloud forest habitat.

First report of strains within the Pythium spinosum species complex causing carrot cavity spot in California

Carrots (Daucus carota L. subsp. sativus (Hoffm.)) with typical symptoms of cavity spot, i.e., sunken, round to elliptical lesions of 2-5 mm long (Hiltunen and White 2002), were collected from two locations in California, Bakersfield and Riverside, in January and July 2019, respectively. Carrots were rinsed in tap water, 4-mm2 lesion fragments were pressed into selective corn meal agar (CMA-PARP; Schrandt et al. 1994) and incubated at 23ºC in the dark for four days. Identification of pure cultures was performed via amplification and sequence analysis of two genomic regions, the Internal Transcribed Spacer 1-5.8S-ITS2 (ITS) region and the cytochrome C oxidase subunit 1 (COI) gene, using the universal primers UN-UP18S42/UN-LO28S576B (Schroeder et al. 2006) and OomCOXI-Levup/OomCOXI-Levlo (Robideau et al. 2011), respectively. Via BLAST, two isolates from organically grown carrots in Bakersfield (MCIF19) and Riverside (JSCS19), with identical ITS sequences (GenBank Acc. Nos. MZ799354 and MZ799355, respectively), showed 99.61% similarity (1021/1025 bp) to that of Pythium spinosum (AY598701.2). Yet, the COI of MCIF19 (MZ803207) showed 98.72% similarity (692/701 bp) to that of Pythium paroecandrum (GU071818.1), while the COI of JSCS19 (MZ803208) was identical (701/701 bp) to that of Pythium kunmingense (GU071820.1), a rarely isolated species considered within the species complex of P. spinosum (Robideau et al. 2011). According to these results, the isolates were identified as belonging to the P. spinosum species complex, part of Pythium Clade F (Lévesque and De Cock 2004; Robideau et al. 2011). Further research is needed to clarify the exact taxonomic status of both isolates. Koch’s postulates were completed using two different assays. Each assay was done twice and with carrots of the cultivar Maverick. Surface-sterilized, freshly harvested, mature carrots, in a plastic box lined with moistened sterile paper towels, were inoculated each with four CMA plugs (5-mm diameter) with actively growing mycelium of each isolate. CMA plugs, non-inoculated or colonized by a known pathogenic P. violae strain, were used as the negative and positive control, respectively. Boxes were closed to maintain humidity and incubated at 23ºC in the dark. Lesions similar to the ones caused by P. violae were observed at day 3 for all plugs of both isolates. No symptoms were observed for the negative control, even after extending the incubation to 7 days. In a more natural assay, four non-treated carrot seeds were planted in tree seedling pots (25 x 6.5 cm) containing sterilized 50/50 peat moss/sand combined with 15-ml V8 broth (Schrandt et al. 1994) with densely grown mycelium. The same inoculation treatments were used as for the carrot disk assay. Plants (one plant/pot, four plants/treatment) were maintained at 23ºC under a 16 h photoperiod with daily watering (20 ml). At 14 weeks, the carrots inoculated with P. violae and the two test isolates showed cavity spot lesions while no symptoms were observed on carrots growing in non-inoculated medium. For both assays, pathogens were re-isolated from rinsed symptomatic tissue and their identity was confirmed using the molecular analysis described above. No oomycetes were recovered from the non-inoculated carrots. Although several Pythium species have been associated with cavity spot before, this is, to our knowledge, the first report of strains within the P. spinosum species complex causing carrot cavity spot in California and elsewhere. Funding: This research was made possible by the California Fresh Carrot Advisory Board (FRA-21). References: Hiltunen, L.H., and White, J. G. 2002. Ann. Appl. Biol. 141:201. Lévesque, C. A., and De Cock, W. A. M. 2004. Mycol. Res. 108:1363. Robideau, G.P., et al. 2011. Mol. Ecol. Resour. 11:1002. Schrandt K. K., et al. 1994. Plant Dis. 78:335. Schroeder, K.L., et al. 2006. Phytopathology 96:637. Supplementary material: Supplementary figure S1 Supplementary figure S2