DIF Detection With Zero-Inflation Under the Factor Mixture Modeling Framework

Response data containing an excessive number of zeros are referred to as zero-inflated data. When differential item functioning (DIF) detection is of interest, zero-inflation can attenuate DIF effects in the total sample and lead to underdetection of DIF items. The current study presents a DIF detection procedure for response data with excess zeros due to the existence of unobserved heterogeneous subgroups. The suggested procedure utilizes the factor mixture modeling (FMM) with MIMIC (multiple-indicator multiple-cause) to address the compromised DIF detection power via the estimation of latent classes. A Monte Carlo simulation was conducted to evaluate the suggested procedure in comparison to the well-known likelihood ratio (LR) DIF test. Our simulation study results indicated the superiority of FMM over the LR DIF test in terms of detection power and illustrated the importance of accounting for latent heterogeneity in zero-inflated data. The empirical data analysis results further supported the use of FMM by flagging additional DIF items over and above the LR test.

An approach of multistage connected ventilation cooling structure for armored vehicle thermal management

The thermal environment of the power cabin and high temperature exhaust gas seriously affect the performance and survivability of armored vehicle on the battlefield. In order to improve the hostile thermal environment of the enclosed power cabin and inhibit the infrared characteristics of exhaust gas, this paper puts forward a multistage connected ventilation cooling structure based on the unique structural characteristics of the armored vehicle. The structure utilizes the rotating action of the fans to introduce the cold air into the power cabin, volute and smoke exhaust pipe in turn. The effects of the multistage connected structure on the temperature field and exhaust infrared detection power of armored vehicle were studied by numerical simulation. It was indicated that the multistage connected ventilation cooling structure can effectively improve the thermal environment of the armored vehicle cabin by about 15.18% and reduce the infrared detection power of exhaust gas by about 11.35%. This paper is of great significance for studying the cooling of power cabin and the design of armored vehicle's infrared stealth.

Detection Power of Separability Criteria Based on a Correlation Tensor: A Case Study

Detection power of separability criteria based on a correlation tensor is tested within a family of generalized isotropic states in [Formula: see text]. For [Formula: see text] all these criteria are weaker than the positive partial transposition (PPT) criterion. Interestingly, our analysis supports the recent conjecture that a criterion based on symmetrically informationally complete positive operator-valued measure (SIC-POVMs) is stronger than realignment criterion.

The influence of QTL allelic diversity on QTL detection in multi-parent populations: a simulation study in sugar beet

Background Multi-parent populations (MPPs) are important resources for studying plant genetic architecture and detecting quantitative trait loci (QTLs). In MPPs, the QTL effects can show various levels of allelic diversity, which can be an important factor influencing the detection of QTLs. In MPPs, the allelic effects can be more or less specific. They can depend on an ancestor, a parent or the combination of parents in a cross. In this paper, we evaluated the effect of QTL allelic diversity on the QTL detection power in MPPs. Results We simulated: a) cross-specific QTLs; b) parental and ancestral QTLs; and c) bi-allelic QTLs. Inspired by a real application in sugar beet, we tested different MPP designs (diallel, chessboard, factorial, and NAM) derived from five or nine parents to explore the ability to sample genetic diversity and detect QTLs. Using a fixed total population size, the QTL detection power was larger in MPPs with fewer but larger crosses derived from a reduced number of parents. The use of a larger set of parents was useful to detect rare alleles with a large phenotypic effect. The benefit of using a larger set of parents was however conditioned on an increase of the total population size. We also determined empirical confidence intervals for QTL location to compare the resolution of different designs. For QTLs representing 6% of the phenotypic variation, using 1600 F2 offspring individuals, we found average 95% confidence intervals over different designs of 49 and 25 cM for cross-specific and bi-allelic QTLs, respectively. Conclusions MPPs derived from less parents with few but large crosses generally increased the QTL detection power. Using a larger set of parents to cover a wider genetic diversity can be useful to detect QTLs with a reduced minor allele frequency when the QTL effect is large and when the total population size is increased.

The Effects of Quantitative Trait Architecture on Detection Power in Short-Term Artificial Selection Experiments

Evolve and resequence (E&R) experiments, in which artificial selection is imposed on organisms in a controlled environment, are becoming an increasingly accessible tool for studying the genetic basis of adaptation. Previous work has assessed how different experimental design parameters affect the power to detect the quantitative trait loci (QTL) that underlie adaptive responses in such experiments, but so far there has been little exploration of how this power varies with the genetic architecture of the evolving traits. In this study, we use forward simulation to build a more realistic model of an E&R experiment in which a quantitative polygenic trait experiences a short, but strong, episode of truncation selection. We study the expected power for QTL detection in such an experiment and how this power is influenced by different aspects of trait architecture, including the number of QTL affecting the trait, their starting frequencies, effect sizes, clustering along a chromosome, dominance, and epistasis patterns. We show that all of these parameters can affect allele frequency dynamics at the QTL and linked loci in complex and often unintuitive ways, and thus influence our power to detect them. One consequence of this is that existing detection methods based on models of independent selective sweeps at individual QTL often have lower detection power than a simple measurement of allele frequency differences before and after selection. Our findings highlight the importance of taking trait architecture into account when designing and interpreting studies of molecular adaptation with temporal data. We provide a customizable modeling framework that will enable researchers to easily simulate E&R experiments with different trait architectures and parameters tuned to their specific study system, allowing for assessment of expected detection power and optimization of experimental design.

SAMA: A Fast Self-Adaptive Memetic Algorithm for Detecting SNP-SNP Interactions Associated with Disease

Detecting SNP-SNP interactions associated with disease is significant in genome-wide association study (GWAS). Owing to intensive computational burden and diversity of disease models, existing methods have drawbacks on low detection power and long running time. To tackle these drawbacks, a fast self-adaptive memetic algorithm (SAMA) is proposed in this paper. In this method, the crossover, mutation, and selection of standard memetic algorithm are improved to make SAMA adapt to the detection of SNP-SNP interactions associated with disease. Furthermore, a self-adaptive local search algorithm is introduced to enhance the detecting power of the proposed method. SAMA is evaluated on a variety of simulated datasets and a real-world biological dataset, and a comparative study between it and the other four methods (FHSA-SED, AntEpiSeeker, IEACO, and DESeeker) that have been developed recently based on evolutionary algorithms is performed. The results of extensive experiments show that SAMA outperforms the other four compared methods in terms of detection power and running time.