Identifying Critical States of Complex Diseases by Single-Sample Jensen-Shannon Divergence

MotivationThe evolution of complex diseases can be modeled as a time-dependent nonlinear dynamic system, and its progression can be divided into three states, i.e., the normal state, the pre-disease state and the disease state. The sudden deterioration of the disease can be regarded as the state transition of the dynamic system at the critical state or pre-disease state. How to detect the critical state of an individual before the disease state based on single-sample data has attracted many researchers’ attention.MethodsIn this study, we proposed a novel approach, i.e., single-sample-based Jensen-Shannon Divergence (sJSD) method to detect the early-warning signals of complex diseases before critical transitions based on individual single-sample data. The method aims to construct score index based on sJSD, namely, inconsistency index (ICI).ResultsThis method is applied to five real datasets, including prostate cancer, bladder urothelial carcinoma, influenza virus infection, cervical squamous cell carcinoma and endocervical adenocarcinoma and pancreatic adenocarcinoma. The critical states of 5 datasets with their corresponding sJSD signal biomarkers are successfully identified to diagnose and predict each individual sample, and some “dark genes” that without differential expressions but are sensitive to ICI score were revealed. This method is a data-driven and model-free method, which can be applied to not only disease prediction on individuals but also targeted drug design of each disease. At the same time, the identification of sJSD signal biomarkers is also of great significance for studying the molecular mechanism of disease progression from a dynamic perspective.

Man Down Situation Detection Using an in-Ear Inertial Platform

Man down situations (MDS) are a health or life threatening situations occurring largely in high-risk industrial workplaces. MDS automatic detection is crucial for workers safety especially in isolated working conditions where workers could be unable to call for help on their own, either due to loss of consciousness or an incapacitating injury. These solution must be reliable, robust, easy to use, but also have a low false-alarm rate, short response time and good ergonomics. This project aims to improve this technology by providing a global MDS definition according to a combination of three observable critical states based on characterization of body movement and orientation data from inertial measurements (accelerometer and gyroscope): the worker falls (F), worker immobility (I), the worker is down on the ground (D). The MDS detection strategy was established based on the detection of at least two distinct states, such as F-I, F-D or I-D, over a certain period of time. This strategy was tested using a large public database, revealing a significant reduction of the false alarms rate to 1.1%, reaching up to 99% accuracy. The proposed detection strategy was also incorporated into a digital earpiece, designed to address hearing protection issues, and validated according to an in vivo test procedure based on simulations of industrial workers normal activities and critical states.

Not One, but Many Critical States: A Dynamical Systems Perspective

The past decade has seen growing support for the critical brain hypothesis, i.e., the possibility that the brain could operate at or very near a critical state between two different dynamical regimes. Such critical states are well-studied in different disciplines, therefore there is potential for a continued transfer of knowledge. Here, I revisit foundations of bifurcation theory, the mathematical theory of transitions. While the mathematics is well-known it's transfer to neural dynamics leads to new insights and hypothesis.