Use of Anthropogenic Nest Materials by Black-crested Titmice Along an Urban Gradient

Numerous avian species use anthropogenic materials in constructing nests, particularly in urbanized environments. Anthropogenic materials, including plastics, have been demonstrated to have both beneficial and harmful effects on survival and reproduction. During the spring of 2018, we collected 45 Black-crested Titmouse Baeolophus atricristatus nests in San Marcos, TX, U.S. with two objectives: 1) assess and compare the mass and proportion of nest materials along an urban gradient, and 2) examine the relationship between nest materials, clutch size, and hatching success. We categorized each nest based on collection location as either urban, residential, park or rural and separated nest materials into six categories: leaves, snakeskin, twigs, moss, plastic, and non-plastic artificial materials. We then compared raw mass and proportion of mass of each nest material among urbanization categories. Nests in the urban category were 1.6-1.9 times lighter in mass than nests in other locations along the urban gradient (p = 0.01) and contained 4-5 times greater proportion, but not mass, of plastic compared to nests in all other locations. Nests in residential areas contained the greatest mass of combined anthropogenic materials. Neither clutch size nor hatching success differed based on urbanization category, nest mass, or proportions of anthropogenic or natural nest materials. The differences in mass of nests and increased proportion of plastics could have been due to a lack of natural nesting materials however, we did not estimate availability of nesting materials at any location. Results add to the growing literature that the use of anthropogenic materials in nests varies across an urban gradient, and the effect of anthropogenic materials on nesting parameters varies among species.

Do Microbiota in the Soil Affect Embryonic Development and Immunocompetence in Hatchling Reptiles?

Reptile eggs develop in intimate association with microbiota in the soil, raising the possibility that embryogenesis may be affected by shifts in soil microbiota caused by anthropogenic disturbance, translocation of eggs for conservation purposes, or laboratory incubation in sterile media. To test this idea we incubated eggs of keelback snakes (Tropidonophis mairii, Colubridae) in untreated versus autoclaved soil, and injected lipopolysaccharide (LPS) into the egg to induce an immune response in the embryo. Neither treatment modified hatching success, water uptake, incubation period, or white-blood-cell profiles, but both treatments affected hatchling size. Eggs incubated on autoclaved soil produced smaller hatchlings than did eggs on untreated soil, suggesting that heat and/or pressure treatment decrease the soil’s suitability for incubation. Injection of LPS reduced hatchling size, suggesting that the presence of pathogen cues disrupts embryogenesis, possibly by initiating immune reactions unassociated with white-blood-cell profiles. Smaller neonates had higher ratios of heterophils to leucocytes, consistent with higher stress in smaller snakes, or body-size effects on investment into different types of immune cells. Microbiota in the incubation medium thus can affect viability-relevant phenotypic traits of hatchling reptiles. We need further studies to explore the complex mechanisms and impacts of environmental conditions on reptilian embryogenesis.

The orientation of nestboxes influences their occupation rates and the breeding success of passerine birds

Nestboxes are widely provided as nesting sites for hole-nesting birds, yet the relative contribution of nestbox characteristics and habitat quality in determining the occupancy rates and breeding success of birds remains unclear. We provided nestboxes in deciduous woodlands in England and examined if those nestboxes were erected in random orientations and whether the orientation of nestboxes and habitat quality, in the form of tree density, influenced their occupation by, and breeding success of, Blue Tits (Cyanistes caeruleus), Great Tits (Parus major) and Pied Flycatchers (Ficedula hypoleuca). We found that first, the nestboxes were erected non-randomly orientated towards the north and east, and away from the south and west. Second, the occupation rates of none of the species was related to nestbox orientation or tree density. Third, the breeding success of neither Blue Tits nor Great Tits varied with tree density but did vary with nestbox orientation. Blue Tit hatching success and fledging success was higher in nestboxes facing south than in other directions whilst in Great Tits, clutch sizes, hatching success and fledging success was higher in nestboxes facing south than nestboxes facing other directions. Our results suggest that nestbox characteristics, such as orientation, have more influence on the reproductive success of passerines than habitat quality. This further suggests that conservationists should orientate nestboxes southwards in order to maximise their benefit to birds in temperate climates during the breeding season.

Population density, habitat preference, and breeding biology of Chukar Partridge (Alectoris chukar) in Malakand division, Khyber Pakhtunkhwa, Pakistan

The field biology of Chukar Partridge (Alectoris chukar) was studied in Malakand division, which is an important range of its distribution in Pakistan. The abundance of the species at different altitudes was studied using both transect trails of various lengths and point counts at certain spots. The average monthly population density was estimated to be 1.448±0.466 birds/ha. The population density in August, September, and October 2020 was significantly (P<0.05) higher, as compared to the rest of the months. Chukar Partridge sightings were the lowest in December, with mean±SD = 0.996±0.147 birds/ha and the highest in October 2.333±0.202 birds/ hae in all the study sites. At each study site, maximum activity habitats were marked and selected for breeding ecology study. Data was collected on breeding time, nest site selection, nest size, incubation period, and hatching success. The breeding season in this species starts in February, with the peak months being March and April, when calls are frequently heard. The frequency of calls varied from 0.15 to 0.3 per minute. Throughout the breeding season, twelve nests were observed using binoculars and camera traps from a distance to avoid disturbance, wherever possible and without disrupting the species. Nesting sites were mostly on slopes under the eaves of Dodonea viscosa, Calotropis procera and Zizyphus oxyphylla. Dry leaves of Poa annua, Cynodon dactylon, Dichanthium annulatum, small twigs of bushes, and downy feathers were used as nesting materials. The average diameter of nest (n=12) was 25.43±3.4 (mean±SD) cm. Overall, the mean clutch size was 94.5±30.187 egg/nest with an incubation period of 22–24 days. The hatching success rate was 82% with 315 successfully hatched chicks, while the fledging rate was 83% (265 fledged out of 315 hatched in, n=42 nests).

Effects of constant incubation regimes on eggs and hatchlings of the egg-laying skink, Oligosoma suteri

<p>The conditions under which reptilian eggs are incubated affect survival probability and physiological attributes of the progeny. The egg-laying skink, Oligosoma suteri, is the only endemic oviparous lizard in New Zealand. No controlled laboratory incubation had previously been undertaken, and thus no information was available on the requirements for successful captive incubation. I studied the effects of incubation regime on the eggs and hatchlings of O. suteri to four months of age. Oligosoma suteri eggs (n = 174) were randomly distributed among three constant incubation temperatures (18°C, 22°C and 26°C) and two water potentials (-120 kPa and -270 kPa). Hatching success and hatchling survival were greatest at 22°C and 26°C, with hatchlings from 18°C incubation suffering from physical abnormalities. Incubation regime and maternal influence did not affect sex of individuals, with equal sex ratios occurring from each incubation treatment. Hatchlings from the 22°C and -120 kPa incubation treatments were larger, for most measurements, and warmer incubation temperatures resulted in increased growth rates. Juveniles from 22°C and 26°C and individuals with greater mass per unit length (condition index) sprinted faster over 0.25 m. Sprint speed was positively correlated with ambient temperature. At four months of age sprint speed decreased in 18°C individuals and individuals incubated at 26°C and -270 kPa compared to their performance at one month. The results suggest that the most successful captive incubation regime for O. suteri is 22°C and -120 kPa. This study also shows that temperature-dependent sex determination does not occur in O. suteri, but that fitness traits are influenced by incubation temperature.</p>

Effects of constant incubation regimes on eggs and hatchlings of the egg-laying skink, Oligosoma suteri

<p>The conditions under which reptilian eggs are incubated affect survival probability and physiological attributes of the progeny. The egg-laying skink, Oligosoma suteri, is the only endemic oviparous lizard in New Zealand. No controlled laboratory incubation had previously been undertaken, and thus no information was available on the requirements for successful captive incubation. I studied the effects of incubation regime on the eggs and hatchlings of O. suteri to four months of age. Oligosoma suteri eggs (n = 174) were randomly distributed among three constant incubation temperatures (18°C, 22°C and 26°C) and two water potentials (-120 kPa and -270 kPa). Hatching success and hatchling survival were greatest at 22°C and 26°C, with hatchlings from 18°C incubation suffering from physical abnormalities. Incubation regime and maternal influence did not affect sex of individuals, with equal sex ratios occurring from each incubation treatment. Hatchlings from the 22°C and -120 kPa incubation treatments were larger, for most measurements, and warmer incubation temperatures resulted in increased growth rates. Juveniles from 22°C and 26°C and individuals with greater mass per unit length (condition index) sprinted faster over 0.25 m. Sprint speed was positively correlated with ambient temperature. At four months of age sprint speed decreased in 18°C individuals and individuals incubated at 26°C and -270 kPa compared to their performance at one month. The results suggest that the most successful captive incubation regime for O. suteri is 22°C and -120 kPa. This study also shows that temperature-dependent sex determination does not occur in O. suteri, but that fitness traits are influenced by incubation temperature.</p>

Detecting inbreeding depression in a severely bottlenecked, recovering species: The little spotted kiwi (Apteryx owenii)

<p>Population bottlenecks reduce genetic variation and population size. Small populations are at greater risk of inbreeding, which further erodes genetic diversity and can lead to inbreeding depression. Inbreeding depression is known to increase extinction risk. Thus, detecting inbreeding depression is important for population viability assessment and conservation management. However, identifying inbreeding depression in wild populations is challenging due to the difficulty of obtaining long-term measures of fitness and error-free measures of individual inbreeding coefficients. I investigated inbreeding depression and our power to detect it in species that have very low genetic variation, using little spotted kiwi (Apteryx owenii) (LSK) as a case study. This endemic New Zealand ratite experienced a bottleneck of, at most, five individuals ~100 years ago and has since been subjected to secondary bottlenecks as a result of introductions to new predator-free locations. There is no behavioural pedigree data available for any LSK population and the status of the species is monitored almost exclusively via population growth. I conducted two seasons of field work to determine hatching success in the two LSK populations with the highest and lowest numbers of founders; Zealandia Sanctuary (40 founders) and Long Island (two founders). I also used simulation-based modelling to assess the feasibility of reconstructing pedigrees based on individual genotypes from LSK populations to calculate pedigree inbreeding coefficients. Finally, I used microsatellite genotypes to measure the genetic erosion in successive filial groupings of Long Island and Zealandia LSK as a result of their respective bottlenecks, and tested for inbreeding depression on Long Island. Hatching success was significantly lower on Long Island than in Zealandia in both years of the study despite significantly higher reproductive effort on Long Island. Although this was suggestive of inbreeding depression on Long Island, simulation results showed that constructing a pedigree for any LSK population based on the genetic markers and samples currently available would lead to inaccurate pedigrees and invalid estimates of individual inbreeding coefficients. Thus, an alternative method of detecting inbreeding and inbreeding depression was required. Microsatellite data showed continued loss of heterozygosity in both populations, but loss of allelic diversity on Long Island only. Individual genotypes indicated that the majority (74%) of the adult Long Island population is comprised of the founding pair (F) and their direct offspring (F1) rather than birds from subsequent generations (F2+). This is not what would be expected if survival was equal between these two filial classes. I suggest that the high levels of inbreeding (≥0.25) in F2+ birds is impacting on their survival, creating a demographic skew in the population and resulting in lower hatching success on average on Long Island when compared to the relatively outbred Zealandia birds. This inbreeding depression appears to have been masked, thus far, by positive population growth on Long Island resulting from the long life span of LSK (27-83 years) and continued reproductive success of the founding pair. Thus, it is likely that the Long Island population will go into decline when the founding pair cease to reproduce. This study highlights the challenges of measuring inbreeding depression in species with very low genetic variation and the importance of assessing the statistical power and reliability of the genetic tools available for those species. It also demonstrates that basic genetic techniques can offer valuable insight when more advanced tools prove error-prone. Monitoring vital rates such as hatching success in conjunction with genetic data is important for assessing the success of conservation translocations and detecting potentially cryptic genetic threats such as inbreeding depression. My results suggest that LSK are being affected by inbreeding depression and that careful genetic management will be required to ensure the long-term viability of this species.</p>

Detecting inbreeding depression in a severely bottlenecked, recovering species: The little spotted kiwi (Apteryx owenii)

<p>Population bottlenecks reduce genetic variation and population size. Small populations are at greater risk of inbreeding, which further erodes genetic diversity and can lead to inbreeding depression. Inbreeding depression is known to increase extinction risk. Thus, detecting inbreeding depression is important for population viability assessment and conservation management. However, identifying inbreeding depression in wild populations is challenging due to the difficulty of obtaining long-term measures of fitness and error-free measures of individual inbreeding coefficients. I investigated inbreeding depression and our power to detect it in species that have very low genetic variation, using little spotted kiwi (Apteryx owenii) (LSK) as a case study. This endemic New Zealand ratite experienced a bottleneck of, at most, five individuals ~100 years ago and has since been subjected to secondary bottlenecks as a result of introductions to new predator-free locations. There is no behavioural pedigree data available for any LSK population and the status of the species is monitored almost exclusively via population growth. I conducted two seasons of field work to determine hatching success in the two LSK populations with the highest and lowest numbers of founders; Zealandia Sanctuary (40 founders) and Long Island (two founders). I also used simulation-based modelling to assess the feasibility of reconstructing pedigrees based on individual genotypes from LSK populations to calculate pedigree inbreeding coefficients. Finally, I used microsatellite genotypes to measure the genetic erosion in successive filial groupings of Long Island and Zealandia LSK as a result of their respective bottlenecks, and tested for inbreeding depression on Long Island. Hatching success was significantly lower on Long Island than in Zealandia in both years of the study despite significantly higher reproductive effort on Long Island. Although this was suggestive of inbreeding depression on Long Island, simulation results showed that constructing a pedigree for any LSK population based on the genetic markers and samples currently available would lead to inaccurate pedigrees and invalid estimates of individual inbreeding coefficients. Thus, an alternative method of detecting inbreeding and inbreeding depression was required. Microsatellite data showed continued loss of heterozygosity in both populations, but loss of allelic diversity on Long Island only. Individual genotypes indicated that the majority (74%) of the adult Long Island population is comprised of the founding pair (F) and their direct offspring (F1) rather than birds from subsequent generations (F2+). This is not what would be expected if survival was equal between these two filial classes. I suggest that the high levels of inbreeding (≥0.25) in F2+ birds is impacting on their survival, creating a demographic skew in the population and resulting in lower hatching success on average on Long Island when compared to the relatively outbred Zealandia birds. This inbreeding depression appears to have been masked, thus far, by positive population growth on Long Island resulting from the long life span of LSK (27-83 years) and continued reproductive success of the founding pair. Thus, it is likely that the Long Island population will go into decline when the founding pair cease to reproduce. This study highlights the challenges of measuring inbreeding depression in species with very low genetic variation and the importance of assessing the statistical power and reliability of the genetic tools available for those species. It also demonstrates that basic genetic techniques can offer valuable insight when more advanced tools prove error-prone. Monitoring vital rates such as hatching success in conjunction with genetic data is important for assessing the success of conservation translocations and detecting potentially cryptic genetic threats such as inbreeding depression. My results suggest that LSK are being affected by inbreeding depression and that careful genetic management will be required to ensure the long-term viability of this species.</p>