superposition approximation
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Author(s):  
Franz Waibl ◽  
Johannes Kraml ◽  
Monica L. Fernández-Quintero ◽  
Johannes R. Loeffler ◽  
Klaus R. Liedl

AbstractHydration thermodynamics play a fundamental role in fields ranging from the pharmaceutical industry to environmental research. Numerous methods exist to predict solvation thermodynamics of compounds ranging from small molecules to large biomolecules. Arguably the most precise methods are those based on molecular dynamics (MD) simulations in explicit solvent. One theory that has seen increased use is inhomogeneous solvation theory (IST). However, while many applications require accurate description of salt–water mixtures, no implementation of IST is currently able to estimate solvation properties involving more than one solvent species. Here, we present an extension to grid inhomogeneous solvation theory (GIST) that can take salt contributions into account. At the example of carbazole in 1 M NaCl solution, we compute the solvation energy as well as first and second order entropies. While the effect of the first order ion entropy is small, both the water–water and water–ion entropies contribute strongly. We show that the water–ion entropies are efficiently approximated using the Kirkwood superposition approximation. However, this approach cannot be applied to the water–water entropy. Furthermore, we test the quantitative validity of our method by computing salting-out coefficients and comparing them to experimental data. We find a good correlation to experimental salting-out constants, while the absolute values are overpredicted due to the approximate second order entropy. Since ions are frequently used in MD, either to neutralize the system or as a part of the investigated process, our method greatly extends the applicability of GIST. The use-cases range from biopharmaceuticals, where many assays require high salt concentrations, to environmental research, where solubility in sea water is important to model the fate of organic substances.


2019 ◽  
Vol 61 (10) ◽  
pp. 1859
Author(s):  
В.А. Важенин ◽  
М.Ю. Артемов ◽  
А.П. Потапов ◽  
А.В. Фокин

Using the second-rank spin Hamiltonian experimental parameters of the rhombic Gd3+ and Eu2+ centers in three garnets, as well as the superposition approximation formalism, estimations of the relaxation of the impurity ions nearest environment have been made.


Entropy ◽  
2018 ◽  
Vol 20 (12) ◽  
pp. 898 ◽  
Author(s):  
Claude Dufour

The study of dense gases and liquids requires consideration of the interactions between the particles and the correlations created by these interactions. In this article, the N-variable distribution function which maximizes the Uncertainty (Shannon’s information entropy) and admits as marginals a set of (N−1)-variable distribution functions, is, by definition, free of N-order correlations. This way to define correlations is valid for stochastic systems described by discrete variables or continuous variables, for equilibrium or non-equilibrium states and correlations of the different orders can be defined and measured. This allows building the grand-canonical expressions of the uncertainty valid for either a dilute gas system or a dense gas system. At equilibrium, for both kinds of systems, the uncertainty becomes identical to the expression of the thermodynamic entropy. Two interesting by-products are also provided by the method: (i) The Kirkwood superposition approximation (ii) A series of generalized superposition approximations. A theorem on the temporal evolution of the relevant uncertainty for molecular systems governed by two-body forces is proved and a conjecture closely related to this theorem sheds new light on the origin of the irreversibility of molecular systems. In this respect, the irreplaceable role played by the three-body interactions is highlighted.


Soft Matter ◽  
2017 ◽  
Vol 13 (48) ◽  
pp. 9093-9102 ◽  
Author(s):  
R. Wulfert ◽  
U. Seifert ◽  
T. Speck

We calculate non-equilibrium depletion forces between a driven and a passive colloidal particle within a dynamical superposition approximation and in computer simulations.


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