Antimicrobial Resistance in Pasteurellaceae Isolates from Pyrenean Chamois (Rupicapra pyrenaica) and Domestic Sheep in an Alpine Ecosystem

Antimicrobial resistance (AMR) has spread worldwide due to the inappropriate use of antimicrobial drugs in human and veterinary medicine, becoming a public health problem. However, little is known about its occurrence and maintenance in wild animals, and very few studies have been carried out in ecosystems subjected to low human pressure. In our study, nasal and lung swabs were collected from hunted Pyrenean chamois (Rupicapra pyrenaica), and nasal swabs from sympatric domestic sheep were also collected. The swabs were cultured in agar plates to obtain bacterial isolates from the Pasteurellaceae family. The presence of AMR was assessed in a total of 28 Pasteurellaceae isolates from 45 Pyrenean chamois, and 9 isolates from sympatric domestic sheep found in the National Hunting Reserve of Freser-Setcases (Northeastern Pyrenees, Spain). The isolates belonged to one of the following three species: Pasteurella multocida, Mannheimia haemolytica and Bibersteinia trehalosi. Some P. multocida and M. haemolytica isolates tested positive for AMR. The statistical analysis revealed no differences between the AMR levels from chamois and domestic sheep isolates. However, one P. multocida of chamois origin presented resistance to cephalosporins and fluoroquinolones, which are antibiotics of critical importance for human health. Further studies are required to elucidate potential routes of dissemination of AMR genes in natural environments and assess any significant persistence in wildlife to design risk mitigation actions.

Molecular Detection and Identification of Chlamydiaceae in the Eyes of Wild and Domestic Ruminant Hosts from Northern Spain

Infections by Chlamydiae are associated with ocular disease in humans and animals. In this study, the presence and diversity of Chlamydia spp. was assessed in diseased and healthy eyes of domestic sheep and wild ruminants that share mountain habitats in northern Spain. The presence of Chlamydia spp. was tested by real-time PCR in 1786 conjunctival swabs collected from both eyes of 893 animals from mountain habitats in northern Spain, and chlamydial species were identified in the positive samples by ArrayTube microarray methods. Chlamydial DNA was detected in 0.6% (CI95% 0.2–1.3) of the Pyrenean chamois (Rupicapra pyrenaica) and 1.4% (CI95% <0.01–8.1) of the sheep (Ovis aries) sampled, with Chlamydia pecorum the only chlamydial species identified. No association of C. pecorum with ocular disease or co-infection with Mycoplasma conjunctivae was found. Further studies on the pathogenesis of infectious keratoconjunctivitis are needed to better understand the ecology of C. pecorum and its possible role as a ruminant pathogen at the wildlife–livestock interface.

Assessing the role of livestock and sympatric wild ruminants in spreading antimicrobial resistant Campylobacter and Salmonella in alpine ecosystems

Background Livestock play an important role as reservoir of enteric pathogens and antimicrobial resistance (AMR), a health and economic concern worldwide. However, little is known regarding the transmission and maintenance of these pathogens at the wildlife-livestock interface. In this study, we assessed the occurrence, genetic diversity and AMR of Campylobacter spp. and Salmonella spp. shed by sympatric free-ranging livestock and a wild herbivore in an alpine ecosystem. Results Campylobacter spp. was isolated from 23.3 % of cattle and 7.7 % of sheep but was not isolated from horses nor Pyrenean chamois (Rupicapra pyrenaica). Campylobacter jejuni was the most frequent species. A high genetic diversity and certain host specificity of C. jejuni isolates was observed. The main AMR detected in Campylobacter isolates was to nalidixic acid (88.2 %), ciprofloxacin (82.4 %) and tetracycline (82.4 %); only 11.7 % of the isolates were pan-susceptible and 17.6 % were multi-resistant. Salmonella ser. Newport was isolated only from one Pyrenean chamois and was pan-susceptible. Conclusions Results show that free-ranging cattle and sheep are spreaders of Campylobacter as well as their AMR strains in the alpine environment. Therefore, contaminated alpine pastures or streams may constitute a source for the dissemination of AMR enteropathogens. However, apparently, alpine wild ungulates such as Pyrenean chamois play a negligible role in the epidemiology of zoonotic enteropathogens and AMR, and are not potential bioindicators of the burden of alpine environments.

Climatic changes and the fate of mountain herbivores

Mountains are strongly seasonal habitats, which require special adaptations in wildlife species living on them. Population dynamics of mountain ungulates are largely determined by the availability of rich food resources to sustain lactation and weaning during summer. Increases of temperature affect plant phenology and nutritional quality. Cold-adapted plants occurring at lower elevations will shift to higher ones, if available. We predicted what could happen to populations of mountain ungulates based on how climate change could alter the distribution pattern and quality of high-elevation vegetation, using the “clover community-Apennine chamois Rupicapra pyrenaica ornata” system. From 1970 to 2014, increasing spring temperatures (2 °C) in our study area led to an earlier (25 days) onset of green-up in Alpine grasslands between 1700 and 2000 m, but not higher up. For 1970–2070, we have projected trends of juvenile winter survival of chamois, by simulating trajectories of spring temperatures and occurrence of clover, through models depicting four different scenarios. All scenarios have suggested a decline of Apennine chamois in its historical core range, during the next 50 years, from about 28% to near-extinction at about 95%. The negative consequences of climate changes presently occurring at lower elevations will shift to higher ones in the future. Their effects will vary with the species-specific ecological and behavioural flexibility of mountain ungulates, as well as with availability of climate refugia. However, global shifts in distributional ranges and local decreases or extinctions should be expected, calling for farsighted measures of adaptive management of mountain-dwelling herbivores.

Food habits of the Japanese serow (Capricornis crispus) in an alpine habitat on Mount Asama, central Japan

We investigated the food habits of the Japanese serow (Capricornis crispus) in alpine habitats using direct observations at Mount Asama, central Japan. We observed the feeding behavior of 13 identified adult serows throughout the year, from April 2016 to October 2017. The animals’ food habits were evaluated by the feeding probability among 2129 observation bouts. The most important food throughout the year was grasses (feeding probability, 57.6%), followed by forbs (43.5%) and dwarf bamboos (11.4%). However, the feeding probability for each food category drastically changed in relation to the season; in particular, grasses and forbs were especially important foods from spring to autumn, whereas dwarf bamboos and conifers were important in winter. These results suggest that the food habits of the serow are flexible and will vary according to seasonal changes in vegetation. The findings also suggest that the feeding ecology of the serow in an alpine area tends to match that of an intermediate feeder rather than a browser, as was reported by several previous studies conducted in forested habitats. However, the food habits of the serows in the alpine habitats were similar to those of other alpine caprids, such as the mountain goat (Oreamnos americanus), alpine chamois (Rupicapra rupicapra) and Pyrenean chamois (Rupicapra pyrenaica). This is the first study to demonstrate that the food habits of the serow are variable according to the season and/or population. Similar to other alpine caprids, the flexible food habits of the serow in alpine habitats are likely an adaptation to an environment with a characteristically unstable food supply.

Detection of tick-borne pathogens in questing Ixodes ricinus in the French Pyrenees and first identification of Rickettsia monacensis in France

Ticks are important vectors of several human and animal pathogens. In this study, we estimated the prevalence of important tick-borne infections in questing ticks from an area in Southwestern France (Hautes-Pyrénées) inhabited by Pyrenean chamois (Rupicapra pyrenaica pyrenaica) experiencing high tick burden. We examined adult and nymph ticks collected by the flag dragging method from 8 to 15 sites in the Pic de Bazès during the years 2009, 2011, 2013 and 2015. PCR assays were conducted on selected ticks for the detection of Borrelia burgdorferi s.l., Babesia spp., Rickettsia spp., spotted fever group (SFG) Rickettsia and Anaplasma phagocytophilum. Randomly selected positive samples were submitted for sequence analysis. A total of 1971 questing ticks were collected including 95 males, 101 females and 1775 nymphs. All collected ticks were identified as Ixodes ricinus. Among them, 696 ticks were selected for pathogen detection and overall prevalence was 8.4% for B. burgdorferi s.l.; 0.4% for Babesia spp.; 6.1% for A. phagocytophilum; 17.6% for Rickettsia spp.; and 8.1% for SFG Rickettsia. Among the sequenced pathogens, we detected in this population of ticks the presence of Babesia sp. EU1 and Rickettsia helvetica, as well as Rickettsia monacensis for the first time in France. The detection of these pathogens in the Pic de Bazès highlights the potential infection risks for visitors to this area and the Pyrenean chamois population.