Aphid Species Specializing on Milkweed Have Distinct Bacterial Symbiont Communities

Host plant range is arguably one of the most important factors shaping microbial communities associated with insect herbivores. However, it is unclear whether host plant specialization limits microbial community diversity or to what extent herbivores sharing a common host plant evolve distinct microbiomes. To investigate whether variation in host plant specialization influences the composition of herbivore symbiont populations we compared bacterial diversity across three milkweed aphid species (Aphis nerii, Aphis asclepiadis, Myzocallis asclepiadis) feeding on a common host plant (Asclepias syriaca) using 16S rRNA metabarcoding. Overall, bacterial species richness did not vary with degree of host plant specialization. However, aphid species harbored distinct bacterial communities that varied in composition and relative abundance of key symbionts. Differences in aphid microbiomes were primarily due to strain variation in the obligate symbiont Buchnera and facultative symbiont Arsenophonus, as most of the low-abundant taxa were found in all three species. Interestingly, A. asclepiadis harbored a greater diversity of unique strains of Buchnera and significantly higher Arsenophonus relative abundances compared to the other two aphid species. Although many low abundance microbes were shared across all milkweed aphids, key differences exist in symbiotic partnerships that could influence additional ecological variation, including variation in ant tending observed across milkweed aphid species via microbial induced changes to honeydew or defensive chemical profiles. This study suggests generalist and specialist herbivore microbiomes are similar when feeding on a common host plant and highlights an intriguing potential role for strain level variation of key aphid symbionts in host-plant interactions.

The draft genome of the specialist flea beetle Altica viridicyanea (Coleoptera: Chrysomelidae)

Background Altica (Coleoptera: Chrysomelidae) is a highly diverse and taxonomically challenging flea beetle genus that has been used to address questions related to host plant specialization, reproductive isolation, and ecological speciation. To further evolutionary studies in this interesting group, here we present a draft genome of a representative specialist, Altica viridicyanea, the first Alticinae genome reported thus far. Results The genome is 864.8 Mb and consists of 4490 scaffolds with a N50 size of 557 kb, which covered 98.6% complete and 0.4% partial insect Benchmarking Universal Single-Copy Orthologs. Repetitive sequences accounted for 62.9% of the assembly, and a total of 17,730 protein-coding gene models and 2462 non-coding RNA models were predicted. To provide insight into host plant specialization of this monophagous species, we examined the key gene families involved in chemosensation, detoxification of plant secondary chemistry, and plant cell wall-degradation. Conclusions The genome assembled in this work provides an important resource for further studies on host plant adaptation and functionally affiliated genes. Moreover, this work also opens the way for comparative genomics studies among closely related Altica species, which may provide insight into the molecular evolutionary processes that occur during ecological speciation.

Phenotypic plasticity in chemical defence of butterflies allows usage of diverse host plants

Host plant specialization is a major force driving ecological niche partitioning and diversification in insect herbivores. The cyanogenic defences of Passiflora plants keep most herbivores at bay, but not the larvae of Heliconiu s butterflies, which can both sequester and biosynthesize cyanogenic compounds. Here, we demonstrate that both Heliconius cydno chioneus and H. melpomene rosina have remarkable plasticity in their chemical defences. When feeding on Passiflora species with cyanogenic compounds that they can readily sequester, both species downregulate the biosynthesis of these compounds. By contrast, when fed on Passiflora plants that do not contain cyanogenic glucosides that can be sequestered, both species increase biosynthesis. This biochemical plasticity comes at a fitness cost for the more specialist H. m. rosina , as adult size and weight for this species negatively correlate with biosynthesis levels, but not for the more generalist H. c. chioneus . By contrast, H. m rosina has increased performance when sequestration is possible on its specialized host plant. In summary, phenotypic plasticity in biochemical responses to different host plants offers these butterflies the ability to widen their range of potential hosts within the Passiflora genus, while maintaining their chemical defences.

Are declines in insects and insectivorous birds related?

A flurry of recently published studies indicates that both insects and birds have experienced wide-scale population declines in the last several decades. Curiously, whether insect and bird declines are causally linked has received little empirical attention. Here, we hypothesize that insect declines are an important factor contributing to the decline of insectivorous birds. We further suggest that insect populations essential to insectivorous birds decline whenever non-native lumber, ornamental, or invasive plant species replace native plant communities. We support our hypothesis by reviewing studies that show (1) due to host plant specialization, insect herbivores typically do poorly on non-native plants; (2) birds are often food limited; (3) populations of insectivorous bird species fluctuate with the supply of essential insect prey; (4) not all arthropod prey support bird reproduction equally well; and (5) terrestrial birds for which insects are an essential source of food have declined by 2.9 billion individuals over the last 50 years, while terrestrial birds that do not depend on insects during their life history have gained by 26.2 million individuals, a 111-fold difference. Understanding the consequences of insect declines, particularly as they affect charismatic animals like birds, may motivate land managers, homeowners, and restoration ecologists to take actions that reverse these declines by favoring the native plant species that support insect herbivores most productively.

Soft Selective Sweep on Chemosensory Genes Correlates with Ancestral Preference for Toxic Noni in a Specialist Drosophila Population

Understanding how organisms adapt to environmental changes is a major question in evolution and ecology. In particular, the role of ancestral variation in rapid adaptation remains unclear because its trace on genetic variation, known as soft selective sweep, is often hardly recognizable from genome-wide selection scans. Here, we investigate the evolution of chemosensory genes in Drosophila yakuba mayottensis, a specialist subspecies on toxic noni (Morinda citrifolia) fruits on the island of Mayotte. We combine population genomics analyses and behavioral assays to evaluate the level of divergence in chemosensory genes and perception of noni chemicals between specialist and generalist subspecies of D. yakuba. We identify a signal of soft selective sweep on a handful of genes, with the most diverging ones involving a cluster of gustatory receptors expressed in bitter-sensing neurons. Our results highlight the potential role of ancestral genetic variation in promoting host plant specialization in herbivorous insects and identify a number of candidate genes underlying behavioral adaptation.

The draft genome of the specialist flea beetle Altica viridicyanea (Coleoptera: Chrysomelidae)

Background: Altica (Coleoptera: Chrysomelidae) is a highly diverse and taxonomically challenging flea beetle genus that has been used to address questions related to host plant specialization, reproductive isolation, and ecological speciation. To further evolutionary studies in this interesting group, here we present a draft genome of a representative specialist, Altica viridicyanea, the first Alticinae genome and the fifth chrysomelid genome reported thus far. Results: The genome is 864.8 Mb and consists of 4,490 scaffolds with a N50 size of 557 kb, which covered 98.6% complete and 0.4% partial insect Benchmarking Universal Single-Copy Orthologs. Repetitive sequences accounted for 62.9% of the assembly, and a total of 17,730 protein-coding gene models and 2,462 non-coding RNA models were predicted. To provide insight into host plant specialization of this monophagous species, we examined the key gene families involved in chemosensation, detoxification of plant secondary chemistry, and plant cell wall-degradation. Conclusions: The genome assembled in this work provides an important resource for further studies on host plant adaptation and functionally affiliated genes. Moreover, this work also opens the way for comparative genomics studies among closely related Altica species, which may provide insight into the molecular evolutionary processes that occur during ecological speciation.

The draft genome of the specialist flea beetle Altica viridicyanea (Coleoptera: Chrysomelidae) provides insight into host plant specialization

Background Altica (Coleoptera: Chrysomelidae) is a highly diverse and taxonomically challenging flea beetle genus that has been used as a model system in which to address questions related to host plant specialization, reproductive isolation, and ecological speciation. To further evolutionary studies in this important group, here we present a high-quality draft genome of a representative specialist, Altica viridicyanea, the first Alticinae genome and the fourth chrysomelid genome reported thus far. Results The genome is 864.8 Mb and consists of 4,490 scaffolds with a N50 size of 557 kb, which covered 98.6% complete and 0.4% partial insect Benchmarking Universal Single-Copy Orthologs. Repetitive sequences accounted for 62.9% of the assembly, and a total of 17,730 protein-coding gene models and 2,462 non-coding RNA models were predicted. To provide insight into host plant specialization of this monophagous species, we examined the key gene families involved in chemosensation, detoxification of plant secondary chemistry, and plant cell wall-degradation. Conclusions The high-quality genome assembled in this work provides an important resource for further studies on host plant adaptation and functionally affiliated genes. Moreover, this work also opens the way for comparative genomics studies among closely related Altica species, which may provide insight into the molecular evolutionary processes that occur during ecological speciation.

Rosaceae, Brassicaceae and Pollen Beetles: exploring relationships and evolution in an anthophilous beetle lineage (Nitidulidae, Meligethes-complex of genera) using an integrative approach

Background: Meligethes are pollen-beetles associated with flowers of Rosaceae as larvae. This genus, in its present-day concept, consists of 63 known species in two subgenera, Meligethes and Odonthogethes, predominantly occurring in the eastern Palaearctic. We analyzed 61 morphological and ecological characters (128 states) of all species, as well as of 7 outgroup species from 7 Meligethinae genera (including the believed sister-genus Brassicogethes), to investigate their phylogeny. A parallel molecular analysis was carried out on 9 Meligethes, 9 Odonthogethes, 3 Brassicogethes and 2 Meligethinus species, based on DNA sequence data from mitochondrial (COI, 16S) and nuclear (CAD) genes, to obtain additional phylogenetic information on the group. Results: Morphological phylogenetic reconstructions supported the monophyly of the genus, and clades corresponding to purported subgenera Meligethes and Odonthogethes. Main species-groups were mostly recovered intact, however some unresolved polytomies remained. Molecular data suggested a different scenario, placing members of Brassicogethes (including 42 mostly W Palearctic species associated with Brassicaceae) as sister to Odonthogethes, with this clade being sister to Meligethes s.str. This alternative phylogenetic assessment suggests that the monophyletic clades Meligethes s.str., Odonthogethes and Brassicogethes should be regarded alternatively as three subgenera of a monophyletic Meligethes, or three genera in a monophyletic genus-complex, with mutually monophyletic Brassicogethes and Odonthogethes. Molecular analyses estimated the origin of this lineage at ca. 14-15 Mya from a common stem including Meligethinus. Conclusions: We hypothesize in the Middle Miocene (likely in Langhian Age), the first Meligethes specialized on Rosaceae, on which they subsequently radiated during Late Miocene and Plio-Pleistocene. This radiation was enforced by geographic isolation in E Asiatic mountain systems, and by larval host-plant specialization. Combined evidence from morphology, ancestral state parsimony reconstruction of host-plant associations, and molecular evidence, suggested that for Meligethes s.str., Rosoideae (Rosa spp.) represented the ancestral hosts, followed by an independent shift of ancestral Odonthogethes (ca. 9-15 Mya) on Rubus (Rosoideae) and members of Rosaceae Spiraeoideae. Other ancestral Odonthogethes probably shifted again on the unrelated plant family Brassicaceae (maybe 8-14 Mya in S China), allowing a rapid westward radiation of the Brassicogethes clade.