Towards the development of a chemical lure to improve the management of invading rat populations

<p>Introduced species, such as Rattus norvegicus and Rattus rattus,have contributed to the extinction of many native animals and plants in New Zealand(NZ). Current strategies exist to monitor, manage and eradicate pest species. However, these haven’t always been completely successful and tools to detect small or invading densities remain to be developed. One possible new method to address this problem is the application of chemical attractants (lures). Recently, a major urinary protein (MUP) has been shown in male miceto act as a sexual attractant. MUPs modulate the release of volatile attractants and have potential to act as attractants themselves. Our aim was to determine if a similar MUP(s) and associated volatiles are present in the urine of rats, with the prospect of creating a chemical lure to use in rat detection and eradication. Using Gas Chromatography/Mass Spectrometry, potential volatiles in rat urine have been identified. Analysis of rat urine by gel electrophoresis has shown MUPs present in both sexes. A 22.4 kDa MUP in Rattus norvegicushas been synthesised and expressed in E.coliusing recombinant DNA technology. Preliminary steps have been made towards the production of a MUP based on ship rat DNA sequence. Future behavioral trials are needed to investigate whether the synthesised protein, in the presence or absence of the urinary-derived volatiles, is a sexual attractant.</p>

Towards the development of a chemical lure to improve the management of invading rat populations

<p>Introduced species, such as Rattus norvegicus and Rattus rattus,have contributed to the extinction of many native animals and plants in New Zealand(NZ). Current strategies exist to monitor, manage and eradicate pest species. However, these haven’t always been completely successful and tools to detect small or invading densities remain to be developed. One possible new method to address this problem is the application of chemical attractants (lures). Recently, a major urinary protein (MUP) has been shown in male miceto act as a sexual attractant. MUPs modulate the release of volatile attractants and have potential to act as attractants themselves. Our aim was to determine if a similar MUP(s) and associated volatiles are present in the urine of rats, with the prospect of creating a chemical lure to use in rat detection and eradication. Using Gas Chromatography/Mass Spectrometry, potential volatiles in rat urine have been identified. Analysis of rat urine by gel electrophoresis has shown MUPs present in both sexes. A 22.4 kDa MUP in Rattus norvegicushas been synthesised and expressed in E.coliusing recombinant DNA technology. Preliminary steps have been made towards the production of a MUP based on ship rat DNA sequence. Future behavioral trials are needed to investigate whether the synthesised protein, in the presence or absence of the urinary-derived volatiles, is a sexual attractant.</p>

The responses of New Zealand's arboreal forest birds to invasive mammal control

<p>Introduced mammalian predators are responsible for over half of contemporary extinctions and declines of birds. Endemic bird species on islands are particularly vulnerable to invasions of mammalian predators. The native bird species that remain in New Zealand forests continue to be threatened by predation from invasive mammals, with brushtail possums (Trichosurus vulpecula) ship rats (Rattus rattus) and stoats (Mustela erminea) identified as the primary agents responsible for their ongoing decline. Extensive efforts to suppress these pests across New Zealand’s forests have created "management experiments" with potential to provide insights into the ecological forces structuring forest bird communities. To understand the effects of invasive mammals on birds, I studied responses of New Zealand bird species at different temporal and spatial scales to different intensities of control and residual densities of mammals. In my first empirical chapter (Chapter 2), I present two meta-analyses of bird responses to invasive mammal control. I collate data from biodiversity projects across New Zealand where long-term monitoring of arboreal bird species was undertaken. The projects cover a range of treatments including fenced sanctuaries, offshore islands, forests treated periodically and sites lacking significant mammal control. I found that New Zealand bird species exhibit complex responses to the varied and sustained management effort that has occurred across New Zealand’s landscape in the last fifty years. Some species show significant positive outcomes to control, notably the larger endemic species, while others, including highly endemic species, consistently decline after control. In Chapter 3, I estimate the responses of bird populations in the central New Zealand region to changes in ship rat densities. I collaborated with scientists from the Department of Conservation (DOC) and Greater Wellington Regional Council and collated biodiversity data from four restoration projects located across the central New Zealand region. I constructed multiple density impact functions (DIFs), where the effect of a change in density of a pest on a valued resource is quantified, to describe the impacts of ship rat population dynamics on native bird populations. These responses were then modelled in a meta-analysis to provide overall effects for bird populations when rat abundance increases. I identified two taxa that exhibit significant negative responses across the region: the native parakeet species (Cyanoramphus spp.) and the tomtit (Petroica macrocephala). Evidence from single projects also showed that two other species were negatively affected by increases in rats: the South Island kaka (Nestor meridionalis) and the North Island rifleman (Acanthisitta chloris). Conversely, populations of the recently introduced silvereye (Zosterops lateralis) were resilient to rat population recovery as silvereye counts significantly increased the year after an increase in ship rat populations was observed. In Chapter 4, I monitored bird species through a 1080 mammal-control operation in the southern Wairarapa. This operation coincided with a heavy beech mast, an irruptive event that occurs every 2-6 years. Most likely because of the abundance of seed, suppression of ship rats and possums appeared to be short-lived, and detections of these two mammals returned to pre-control levels within one and two years, respectively. Short-term responses of native birds to the control operation were positive: initially, for the small-medium sized bird species (i.e. the bellbird (Anthornis melanura), rifleman, tomtit, and tui (Prosthemadera novaeseelandiae) with a delayed positive response of the largest species 2.5 years after control (the New Zealand pigeon (Hemiphaga novaeseelandiae). In my final data chapter, I focus on the nesting outcomes of a common endemic species, the North Island fantail (Rhipidura fuliginosa placabilis), to different densities of ship rats. Through intensive monitoring of over 100 fantail nests, I estimated the outcomes of nesting attempts and formulated a DIF where nesting success was modelled as a function of the abundance of ship rats at the nest micro-site. Nesting attempts suffered higher failure rates at sites with higher rat abundance however, in this study I also identified a feature of nest placement that apparently limits predation from mammals. Nests placed on thinner branches were more likely to survive rat predation, a neat trick that perhaps only the smallest of birds can manage. My thesis identifies some species as particularly vulnerable to invasive mammalian predation while others are more resilient. Understanding resilience and vulnerability in New Zealand’s bird species sheds light on historical extinctions and the processes that continue to mould New Zealand's avifauna. I quantified responses of New Zealand forest bird species, to different levels of invasive mammal management and residual densities of mammals, with consideration of climate and forest productivity. These estimates could be applied by conservation managers to more effectively gauge future threats to native avifauna according to the attributes of bird species and present and future management scenarios.</p>

The responses of New Zealand's arboreal forest birds to invasive mammal control

<p>Introduced mammalian predators are responsible for over half of contemporary extinctions and declines of birds. Endemic bird species on islands are particularly vulnerable to invasions of mammalian predators. The native bird species that remain in New Zealand forests continue to be threatened by predation from invasive mammals, with brushtail possums (Trichosurus vulpecula) ship rats (Rattus rattus) and stoats (Mustela erminea) identified as the primary agents responsible for their ongoing decline. Extensive efforts to suppress these pests across New Zealand’s forests have created "management experiments" with potential to provide insights into the ecological forces structuring forest bird communities. To understand the effects of invasive mammals on birds, I studied responses of New Zealand bird species at different temporal and spatial scales to different intensities of control and residual densities of mammals. In my first empirical chapter (Chapter 2), I present two meta-analyses of bird responses to invasive mammal control. I collate data from biodiversity projects across New Zealand where long-term monitoring of arboreal bird species was undertaken. The projects cover a range of treatments including fenced sanctuaries, offshore islands, forests treated periodically and sites lacking significant mammal control. I found that New Zealand bird species exhibit complex responses to the varied and sustained management effort that has occurred across New Zealand’s landscape in the last fifty years. Some species show significant positive outcomes to control, notably the larger endemic species, while others, including highly endemic species, consistently decline after control. In Chapter 3, I estimate the responses of bird populations in the central New Zealand region to changes in ship rat densities. I collaborated with scientists from the Department of Conservation (DOC) and Greater Wellington Regional Council and collated biodiversity data from four restoration projects located across the central New Zealand region. I constructed multiple density impact functions (DIFs), where the effect of a change in density of a pest on a valued resource is quantified, to describe the impacts of ship rat population dynamics on native bird populations. These responses were then modelled in a meta-analysis to provide overall effects for bird populations when rat abundance increases. I identified two taxa that exhibit significant negative responses across the region: the native parakeet species (Cyanoramphus spp.) and the tomtit (Petroica macrocephala). Evidence from single projects also showed that two other species were negatively affected by increases in rats: the South Island kaka (Nestor meridionalis) and the North Island rifleman (Acanthisitta chloris). Conversely, populations of the recently introduced silvereye (Zosterops lateralis) were resilient to rat population recovery as silvereye counts significantly increased the year after an increase in ship rat populations was observed. In Chapter 4, I monitored bird species through a 1080 mammal-control operation in the southern Wairarapa. This operation coincided with a heavy beech mast, an irruptive event that occurs every 2-6 years. Most likely because of the abundance of seed, suppression of ship rats and possums appeared to be short-lived, and detections of these two mammals returned to pre-control levels within one and two years, respectively. Short-term responses of native birds to the control operation were positive: initially, for the small-medium sized bird species (i.e. the bellbird (Anthornis melanura), rifleman, tomtit, and tui (Prosthemadera novaeseelandiae) with a delayed positive response of the largest species 2.5 years after control (the New Zealand pigeon (Hemiphaga novaeseelandiae). In my final data chapter, I focus on the nesting outcomes of a common endemic species, the North Island fantail (Rhipidura fuliginosa placabilis), to different densities of ship rats. Through intensive monitoring of over 100 fantail nests, I estimated the outcomes of nesting attempts and formulated a DIF where nesting success was modelled as a function of the abundance of ship rats at the nest micro-site. Nesting attempts suffered higher failure rates at sites with higher rat abundance however, in this study I also identified a feature of nest placement that apparently limits predation from mammals. Nests placed on thinner branches were more likely to survive rat predation, a neat trick that perhaps only the smallest of birds can manage. My thesis identifies some species as particularly vulnerable to invasive mammalian predation while others are more resilient. Understanding resilience and vulnerability in New Zealand’s bird species sheds light on historical extinctions and the processes that continue to mould New Zealand's avifauna. I quantified responses of New Zealand forest bird species, to different levels of invasive mammal management and residual densities of mammals, with consideration of climate and forest productivity. These estimates could be applied by conservation managers to more effectively gauge future threats to native avifauna according to the attributes of bird species and present and future management scenarios.</p>

Urban Rats in Wellington: Estimating Home Ranges, Population Densities and Detection Probabilities

<p><b>The ship rat (Rattus rattus) and Norway rat (Rattus norvegicus) are prolific pest species with a near- global distribution. Their spread has had serious public health repercussions as carriers of disease and by causing considerable agricultural losses. They are also invasive to many native ecosystems, degrading ecosystem processes, and preying upon native species, resulting in significant losses to biodiversity. </b></p><p>This study aims to guide more effective rat management strategies through an increased understanding of the spatial ecology of rats in an urban environment. Three separate studies were conducted, all located in Wellington, New Zealand: </p><p>1) A radio-telemetry study looked at the home range and spatial behavior of 10 urban ship rats. Results showed comparatively small home ranges (0.01 - 0.45 ha at 100% minimum convex polygons) with maximum linear distances within a home range of 19-74m. There was significant spatial overlap between home ranges– up to 90% (between two adjacent home ranges); co-nesting behavior between both sexes; frequent diurnal activity amongst ship rats (9 of 10 rats); and two longer distance dispersal events (~120m) by ship rats. Implications for rat management include: a need for tighter spacing of devices in urban habitats for control and detection of survivors, potentially every 20-25m if eradication is the goal. </p><p>2) A capture mark re-sight study to estimate the minimum density of ship rats in an 0.63 ha urban bush fragment. A total of five rats were live caught in cage traps and uniquely marked before release. An additional eight wild rats were uniquely identified on cameras based on distinctive features of their appearance. A conservative Lincoln-Petersen estimate was used to estimate the number of rats within the bush fragment: this produced an estimate of 14.6 rats with 95% confidence intervals [7.69-55.6], which translates to a density of 23.2 rats/ha [12.2-88.25]. These densities are significantly higher than those found in most mainland studies and more comparable to those in island habitats. This could be because ship rats are subsidizing their diet with human-derived foods, although this was not confirmed here. </p><p>3) A detection probability study investigated the sensitivity of three devices (wax tag, chew card and bait station) to ship rat presence and examining age-related differences in detection. The bait station was found to have the highest detection probability (0.5 detections/sighting) followed by the wax tag (0.44 detections/sighting) and chew card (0.37 detections/sighting) although results were based on data retrieved from a low sample size of devices (n=2 of each type). The bait station showed a sharp difference between the adult (0.1 detections/sighting) and adolescent populations (0.89 detections/sighting) detection probability. Furthermore, this difference in detection probability was found, although less pronounced, in both the wax tag and chew card. Implications for rat management include: a recommendation that wax tags be used as the primary means of ship rat monitoring; a need for further behavioral studies looking at detection probabilities across a range of kill and monitoring devices so that the most effective ones can be identified; and the development and testing of devices that are attractive to adult rats that may have become “trap shy”. </p><p>These three studies together provide useful insights into urban rat ecology with implications for pest management. However, a more comprehensive study with larger sample sizes is recommended to fully substantiate this work. </p>

Urban Rats in Wellington: Estimating Home Ranges, Population Densities and Detection Probabilities

<p><b>The ship rat (Rattus rattus) and Norway rat (Rattus norvegicus) are prolific pest species with a near- global distribution. Their spread has had serious public health repercussions as carriers of disease and by causing considerable agricultural losses. They are also invasive to many native ecosystems, degrading ecosystem processes, and preying upon native species, resulting in significant losses to biodiversity. </b></p><p>This study aims to guide more effective rat management strategies through an increased understanding of the spatial ecology of rats in an urban environment. Three separate studies were conducted, all located in Wellington, New Zealand: </p><p>1) A radio-telemetry study looked at the home range and spatial behavior of 10 urban ship rats. Results showed comparatively small home ranges (0.01 - 0.45 ha at 100% minimum convex polygons) with maximum linear distances within a home range of 19-74m. There was significant spatial overlap between home ranges– up to 90% (between two adjacent home ranges); co-nesting behavior between both sexes; frequent diurnal activity amongst ship rats (9 of 10 rats); and two longer distance dispersal events (~120m) by ship rats. Implications for rat management include: a need for tighter spacing of devices in urban habitats for control and detection of survivors, potentially every 20-25m if eradication is the goal. </p><p>2) A capture mark re-sight study to estimate the minimum density of ship rats in an 0.63 ha urban bush fragment. A total of five rats were live caught in cage traps and uniquely marked before release. An additional eight wild rats were uniquely identified on cameras based on distinctive features of their appearance. A conservative Lincoln-Petersen estimate was used to estimate the number of rats within the bush fragment: this produced an estimate of 14.6 rats with 95% confidence intervals [7.69-55.6], which translates to a density of 23.2 rats/ha [12.2-88.25]. These densities are significantly higher than those found in most mainland studies and more comparable to those in island habitats. This could be because ship rats are subsidizing their diet with human-derived foods, although this was not confirmed here. </p><p>3) A detection probability study investigated the sensitivity of three devices (wax tag, chew card and bait station) to ship rat presence and examining age-related differences in detection. The bait station was found to have the highest detection probability (0.5 detections/sighting) followed by the wax tag (0.44 detections/sighting) and chew card (0.37 detections/sighting) although results were based on data retrieved from a low sample size of devices (n=2 of each type). The bait station showed a sharp difference between the adult (0.1 detections/sighting) and adolescent populations (0.89 detections/sighting) detection probability. Furthermore, this difference in detection probability was found, although less pronounced, in both the wax tag and chew card. Implications for rat management include: a recommendation that wax tags be used as the primary means of ship rat monitoring; a need for further behavioral studies looking at detection probabilities across a range of kill and monitoring devices so that the most effective ones can be identified; and the development and testing of devices that are attractive to adult rats that may have become “trap shy”. </p><p>These three studies together provide useful insights into urban rat ecology with implications for pest management. However, a more comprehensive study with larger sample sizes is recommended to fully substantiate this work. </p>

Using playback to estimate the distribution and density of the world's smallest flightless bird, the Inaccessible Island Rail Atlantisia rogersi

Summary The Inaccessible Island Rail Atlantisia rogersi, the world’s smallest extant flightless bird, is endemic to Inaccessible Island, a 14-km2 uninhabited island in the Tristan da Cunha archipelago, central South Atlantic Ocean. Rail populations are notoriously hard to survey and the rugged topography of Inaccessible Island makes a survey particularly challenging. Fortunately, Inaccessible Island Rails are very vocal, because their secretive behaviour means birds are hard to observe in the dense vegetation. We assessed the distribution of rails across Inaccessible Island using playbacks at 350 point-count sites in October–November 2018. Rail calls were heard at 98% of sites and we estimate the rail population to be in the order of 10,300 birds (95% CI 9,100–12,200), based on estimated rail densities in the six main habitats. Historic population estimates were reasonably crude and thus not suitable for inferring population trends, but the population appears to be stable and we recommend the species’ status remains as ‘Vulnerable’. The accidental introduction of alien mammals poses the greatest threat to the survival of the Inaccessible Island Rail and the removal of house mouse Mus musculus and ship rat Rattus rattus from neighbouring Tristan da Cunha Island would greatly reduce the risk of such a catastrophe.