The last missing piece of the Triangle of U: the evolution of the tetraploid Brassica carinata genome

Ethiopian mustard (Brassica carinata) is an ancient crop with significant potential for expanded cultivation as a biodiesel feedstock. The remarkable stress resilience of B. carinata and desirable seed fatty acid profile addresses the ongoing food vs. fuel debate as the crop is productive on marginal lands otherwise not suitable for even closely related species. B. carinata is one of six key Brassica spp. that share three major genomes: three diploid species (AA, BB, CC) that spontaneously hybridized in a pairwise manner, forming three allotetraploid species (AABB, AACC, and BBCC). Each of these genomes has been researched extensively, except for that of B. carinata. In the present study, we report a high-quality, 1.31 Gbp genome with 156.9-fold sequencing coverage for B. carinata var. Gomenzer, completing and confirming the classic Triangle of U, a theory of the evolutionary relationships among these six species that arose almost a century ago. Our assembly provides insights into the genomic features that give rise to B. carinata's superior agronomic traits for developing more climate-resilient Brassica crops with excellent oil production. Notably, we identified an expansion of transcription factor networks and agronomically-important gene families. Completing the Triangle of U comparative genomics platform allowed us to examine the dynamics of polyploid evolution and the role of subgenome dominance in domestication and agronomical improvement.

Severity of clubroot in kale related to management practices and soil attributes

ABSTRACT: Clubroot disease, caused by Plasmodiophora brassicae, limits the production of Brassica spp. worldwide. Little is known about the factors related to the development of the disease in kale (Brassica oleracea var. acephala) plants and in crops in mountainous areas under tropical conditions. This study examined the severity of clubroot in kale crops as well as identify potential flaws in management and the soil and relief factors related to its occurrence. The study was conducted in 24 kale fields in the mountainous region of Rio de Janeiro (Brazil). Soil and kale growth management practices adopted in the region were identified and samples of soil and plants were collected. Subsequently, soil and relief attributes, disease severity, biomass and nutrient and Al contents and accumulation in the plants were determined. There was a high spread of the pathogen in the areas. Inappropriate and recurrent practices in the region were detected, e.g., sequential cultivation of host species, low adoption of soil fertility analysis and liming and conservation practices, and community use of agricultural machinery and implements without prior cleaning. The disease was associated with more acidic soils, subject to greater water accumulation and with high levels of Al3+ as well as with higher Al contents and accumulation in the roots. Management practices must be adopted in the region to reduce the potential inoculum of P. brassicae and to increase soil fertility.

Rapeseed-Mustard Breeding in India: Scenario, Achievements and Research Needs

Brassica spp., commonly known as rapeseed-mustard, plays a significant role in the Indian economy by providing edible oils, vegetables, condiments and animal feed. Globally, India holds second and third position in rapeseed-mustard area under cultivation and production, respectively. However, anthropogenically accelerated climate change thwarts yield potential of rapeseed-mustard by employing abiotic (drought, flood, temperature variation and salinity) and biotic (disease and insects) stresses. Various approaches such as molecular breeding, pre-breeding, −omics and biotechnological interventions have been used to develop varieties for improved yield and oil quality, climate resilient and resistance or tolerance to abiotic and biotic stresses. In this context, this chapter highlighted the different cytoplasmic male sterility (CMS) sources and their potential use for hybrid development. At the end, this chapter also enlisted salient achievement by the government and non-government institutes and briefly described the future perspective for improvement of rapeseed-mustard in India.

Fanconi anemia ortholog FANCM regulates meiotic crossover distribution in plants

Meiotic recombination increases genetic diversity and manipulation of its frequency and distribution holds great promise in crop breeding. In Arabidopsis thaliana, FANCM (a homolog of mammalian Fanconi anemia complementation group M) suppresses recombination and its function seems conserved in other species including the rosids Brassica spp. and pea (Pisum sativum), and the monocot rice (Oryza sativa). To examine the role of FANCM during meiotic recombination in lettuce (Lactuca sativa, an asterid), we characterized the function of lettuce LsFANCM and found that it can functionally substitute for AtFANCM in transgenic Arabidopsis plants. Moreover, three independent CRISPR/Cas9-edited lettuce Lsfancm mutants showed reduced pollen viability and seed setting. Unexpectedly, analyses of chromosome behavior revealed that 77.8% of Lsfancm meiocytes exhibited univalents. The normal formation of double-strand breaks in DNA and the discontinuous assembly of synaptonemal complex in Lsfancm mutants supports the hypothesis that LsFANCM might be dispensable for the initiation of meiotic recombination but required for normal synapsis. Furthermore, the frequency of lettuce HEI10 (Human Enhancer of Invasion 10) foci, a marker for Class-I crossovers (COs), was similar between wild-type (WT) and Lsfancm. Strikingly, the distribution of LsHEI10 foci and chiasmata in Lsfancm meiotic chromosomes was markedly different from the WT. A similar alteration in the distribution of Class-I COs was also observed in the Arabidopsis Atfancm mutant. Taken together, these results demonstrate that FANCM is important for shaping the distribution of meiotic Class-I COs in plants, and reveal an evolutionarily divergent role for FANCM in meiotic bivalent formation between Arabidopsis and lettuce.

Glucosinolates in Brassica Vegetables: Characterization and Factors That Influence Distribution, Content, and Intake

Glucosinolates (GSLs) are a class of sulfur-containing compounds found predominantly in the genus Brassica of the Brassicaceae family. Certain edible plants in Brassica, known as Brassica vegetables, are among the most commonly consumed vegetables in the world. Over the last three decades, mounting evidence has suggested an inverse association between consumption of Brassica vegetables and the risk of various types of cancer. The biological activities of Brassica vegetables have been largely attributed to the hydrolytic products of GSLs. GSLs can be hydrolyzed by enzymes; thermal or chemical degradation also breaks down GSLs. There is considerable variation of GSLs in Brassica spp., which are caused by genetic and environmental factors. Most Brassica vegetables are consumed after cooking; common cooking methods have a complex influence on the levels of GSLs. The variation of GSLs in Brassica vegetables and the influence of cooking and processing methods ultimately affect their intake and health-promoting properties. Expected final online publication date for the Annual Review of Food Science and Technology, Volume 12 is March 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.

Sampling stage and plant part sampled to determine micronutrient sufficiency in field and horticultural crops

Plant tissue testing requires the selection of the appropriate plant part at best stage of growth when it contains higher content of nutrients. The paper discusses the appropriate stage of growth and plant part to sample for a variety of crops. Micronutrient concentrations were consistently higher in leaves than in any other part of the plant. Leaf sheath in cereals and stems in dicots contained the least amount of nutrients. It is recommended that recently matured leaves in cereals and Brassica spp., young leaves in soybeans and potatoes, and entire plant tops at the 10% bloom stage for forage legumes be sampled to determine the micronutrient nutrient status of these crops.

Role of honey bee on mustard (Brassica spp.) yield

The study was conducted in the field at Nagarpur, Tangail, Bangladesh, from November 2016 to February 2017 to find out the role of honey bees on mustard yield. Honey bee (Apis mellifera) was the main insect pollinator during mustard flowering season. Mustard seeds of variety Tori-7 were selected for this experiment. Three different treatments were used, viz. control, netting with honey bees and netting without honey bees. Honey bees helped mustard pollination, but decreased the flowering period (6 days) of the mustard plant. Honey bees assisted the pollination of mustard and increased the number of pod per plant (14%) as well as the number of seeds per pod (11%). Honey bees enhanced the pollination of mustard plant, and netting with honey bees increased the mean seed yield (15%) per plant of mustard, however, decreased the period of flowering stage of mustard. Mustard yield was considerably higher in honey bee foraging plots. J. Biodivers. Conserv. Bioresour. Manag. 2020, 6(1): 25-30