Features of Bacterial Microbiota in the Wild Habitat of Pulsatilla tongkangensis, the Endangered “Long-Sepal Donggang Pasque-Flower Plant,” Endemic to Karst Topography of Korea

Microbes associated with plants significantly influence the development and health of the plants. The diversity and function of microbiomes associated with the long-sepal Donggang pasque-flower (DPF) plant, an endemic and endangered species in karst ecosystems, remain unexplored. In this study, we investigated the features of bacterial communities associated with the rhizosphere and roots of DPF plants and their functions in plant growth promotion. The DPF plants were collected from natural and cultivated habitats, and their 16S rDNA was sequenced to assess the bacterial community structures. The bacterial microbiota was more diverse in wild than in cultivated plants. The core bacterial microbiota commonly functioned as endophytes in both wild and cultivated DPF plants, although there were some differences. The identified bacterial strains benefited plants through nitrogen fixation, phosphate solubilization, or phytohormone production, inducing measurable growth differences in Arabidopsis thaliana. To the best of our knowledge, this study is the first to report the bacterial community structures associated with the rhizosphere soil and roots of DPF plants in karst ecosystems. The bacterial strains isolated in this study could be used to aid sustainable growth and restoration of rare plants in karst ecosystems. Our systematic research on the microbiomes associated with these endangered plants will contribute to their conservation as well as development of better cultivation.

Soil depth alters the consequences of species diversity for productivity in an experimental karst herbaceous community

Aims The mechanism by which species diversity drives productivity in different ecosystems is controversial, possibly due to the confounding effects of key environmental variables. Karst ecosystems are fragile and are at great risk of species loss. In these ecosystems, soil depth is a key driver of community diversity and productivity. However, the influence of soil depth on the relationship between species diversity and productivity in karst ecosystems remains unclear.Methods We established artificial karst herbaceous communities with different soil depths and species richness levels and determined how two biodiversity effects—complementarity effect (effect of positive interactions among species) and selection effect (effect due to dominance of productive species)—contributed to productivity.Results Soil depth, species diversity, and different species combinations were significant predictors of productivity. Species diversity significantly positively affected productivity at all three soil depths, with the effect size of species diversity being the greatest in medium-depth soil. Net diversity effects were greater than 0 in all multi-species communities, indicating that complementarity and selection effects both positively influenced productivity. However, complementarity effect had a greater contribution to productivity than selection effect in all multi-species communities. Furthermore, the contribution of complementarity effect increased with increasing soil depth, while that of selection effect decreased.Conclusions Soil depth influences the relationship between species diversity and productivity in karst herbaceous communities. Furthermore, complementarity effect is the major mechanism by which diversity increases community productivity, particularly in shallow soil. Therefore, environmental variables should be seriously considered when studying the relationship between species diversity and function in other ecosystems.

Soil Moisture Responses Under Different Vegetation Types to Winter Rainfall Events in a Humid Karst Region

Humid karst ecosystems are fragile, with precipitation being the main source of soil moisture recharge. The process of soil moisture recharge and usage varies by vegetation type. To analyze the dynamics of soil moisture under different vegetation types during rainfall events, we continuously monitored soil moisture in arable land, grassland, shrub, and forest areas at 10-minute intervals from November 6, 2019, to January 6, 2020.The arable land was used as a control group. Soil moisture under the different vegetation types responded to light, moderate, and rainstorm events with large rainfall amounts. However, only the soil moisture in the grassland areas responded to a light rainfall event with a rainfall amount of 0.87 mm. The largest soil moisture recharge (12.63 mm) and decline (2.08%) were observed for the grassland areas, with the smallest observed for the forest areas. While the grassland areas showed the greatest decline in soil moisture following rainfall, they were more easily recharged during the winter rainfall events. Soil moisture in forests and shrubs was less recharged than in grasslands but also declined less. Therefore, forests and shrubs are better at retaining soil moisture in winter, which is informative for the formulation of a regional vegetation recovery model.

Comparison of Drivers of Soil Microbial Communities Developed in Karst Ecosystems with Shallow and Deep Soil Depths

Soil erosion is prevalent in karst areas, but few studies have compared the differences in the drivers for soil microbial communities among karst ecosystems with different soil depths, and most studies have focused on the local scale. To fill this research gap, we investigated the upper 20 cm soil layers of 10 shallow–soil depth (shallow–SDC, total soil depth less than 100 cm) and 11 deep–soil depth communities (deep–SDC, total soil depth more than 100 cm), covering a broad range of vegetation types, soils, and climates. The microbial community characteristics of both the shallow–SDC and deep–SDC soils were tested by phospholipid fatty acid (PLFAs) analysis, and the key drivers of the microbial communities were illustrated by forward selection and variance partitioning analysis. Our findings demonstrated that more abundant soil nutrients supported higher fungal PLFA in shallow–SDC than in deep–SDC (p < 0.05). Furthermore, stronger correlation between the microbial community and the plant–soil system was found in shallow–SDC: the pure plant effect explained the 43.2% of variance in microbial biomass and 57.8% of the variance in the ratio of Gram–positive bacteria to Gram–negative bacteria (G+/G−), and the ratio of fungi to total bacteria (F/B); the pure soil effect accounted for 68.6% variance in the microbial diversity. The ratio of microbial PLFA cyclopropyl to precursors (Cy/Pr) and the ratio of saturated PLFA to monounsaturated PLFA (S/M) as indicators of microbial stress were controlled by pH, but high pH was not conducive to microorganisms in this area. Meanwhile, Cy/Pr in all communities was >0.1, indicating that microorganisms were under environmental stress. Therefore, the further ecological restoration of degraded karst communities is needed to improve their microbial communities.