Elucidating the Mechanism of Excited State Bond Homolysis in Nickel–Bipyridine Photoredox Catalysts

Ni 2,2’–bipyridine (bpy) complexes are commonly employed photoredox catalysts of bond-forming reactions in organic chemistry. However, the mechanisms by which they operate are still under investigation. One potential mode of catalysis is via entry into Ni(I)/Ni(III) cycles, which can be made possible by light-induced, excited state Ni(II)–C bond homolysis. Here we report experimental and computational analyses of a library of Ni(II)-bpy aryl halide complexes, Ni(Rbpy)(R′Ph)Cl (R = MeO, t-Bu, H, MeOOC; R′ = CH3, H, OMe, F, CF3), to illuminate the mechanism of excited state bond homolysis. At given excitation wavelengths, photochemical homolysis rates span two orders of magnitude across these structures and correlate linearly with Hammett parameters of both bpy and aryl ligands, reflecting structural control over key metal-to-ligand charge transfer (MLCT) and ligand-to-metal charge transfer (LMCT) excited state potential energy surfaces (PESs). Temperature- and wavelength-dependent investigations reveal moderate excited state barriers (ΔH‡ ~4 kcal mol-1) and a minimum energy excitation threshold (~55 kcal mol-1, 525 nm), respectively. Correlations to electronic structure calculations further support a mechanism in which repulsive triplet excited state PESs featuring a critical aryl-to-Ni LMCT lead to bond rupture. Structural control over excited state PESs provides a rational approach to utilize photonic energy and leverage excited state bond homolysis processes in synthetic chemistry.

Unique intramolecular oxidative rearrangement N-nitrosation mechanism of non-heam iron-containing enzyme SznF

ABSTRACTNon-heam iron-dependent enzyme SznF catalyzes a critical step of the L-arginine derived guanidine group rearrangement to produce the N-nitrosourea pharmacophore in the process of SZN biosynthesis. The intramolecular oxidative rearrangement process is accomplished in the Fe(II)-containing active site located at the cupin domain of SznF, with which the catalytic mechanism remains elusive. In this work, density functional theory methods have been employed to investigate possible catalytic mechanisms of SznF. The N-nitrosation reaction in SznF was found to follow an energetically favorable pathway which includes six consecutive steps: (1) formation of FeII-superoxo species with dioxgen binding on the iron center; (2) superoxo group attacking on the Cε of substrate to form the peroxo-bridge complex; (3) Cε-Nω bond homolysis to release NωO; (4) peroxo bridge heterolytic cleavage; (5) deprotonation of by Fe-O group; (6) the couples with the NωO group and generates the N-nitroso product. The reaction proceeds in an unexpected way during which the electrons shuttle among two NO groups of the substrate and the peroxo moiety to promote Cε-Nω bond homolysis and O-O bond heterolysis sequentially without generating high-valent Fe-O species, which is distinct from any known reactions catalyzed by the iron-containing enzyme. The unusual mechanism of SznF shed light on the area of enzymatic N-nitrosation reactions.

Mobile loop dynamics in adenosyltransferase control binding and reactivity of coenzyme B12

Cobalamin is a complex organometallic cofactor that is processed and targeted via a network of chaperones to its dependent enzymes. AdoCbl (5′-deoxyadenosylcobalamin) is synthesized from cob(II)alamin in a reductive adenosylation reaction catalyzed by adenosyltransferase (ATR), which also serves as an escort, delivering AdoCbl to methylmalonyl-CoA mutase (MCM). The mechanism by which ATR signals that its cofactor cargo is ready (AdoCbl) or not [cob(II)alamin] for transfer to MCM, is not known. In this study, we have obtained crystallographic snapshots that reveal ligand-induced ordering of the N terminus ofMycobacterium tuberculosisATR, which organizes a dynamic cobalamin binding site and exerts exquisite control over coordination geometry, reactivity, and solvent accessibility. Cob(II)alamin binds with its dimethylbenzimidazole tail splayed into a side pocket and its corrin ring buried. The cosubstrate, ATP, enforces a four-coordinate cob(II)alamin geometry, facilitating the unfavorable reduction to cob(I)alamin. The binding mode for AdoCbl is notably different from that of cob(II)alamin, with the dimethylbenzimidazole tail tucked under the corrin ring, displacing the N terminus of ATR, which is disordered. In this solvent-exposed conformation, AdoCbl undergoes facile transfer to MCM. The importance of the tail in cofactor handover from ATR to MCM is revealed by the failure of 5′-deoxyadenosylcobinamide, lacking the tail, to transfer. In the absence of MCM, ATR induces a sacrificial cobalt–carbon bond homolysis reaction in an unusual reversal of the heterolytic chemistry that was deployed to make the same bond. The data support an important role for the dimethylbenzimidazole tail in moving the cobalamin cofactor between active sites.

Migratory functionalization of unactivated alkyl bromides for construction of all-carbon quaternary centers via transposed tert-C-radicals

Despite remarkable recent advances in transition-metal-catalyzed C(sp3)−C cross-coupling reactions, there remain challenging bond formations. One class of such reactions include the formation of tertiary-C(sp3)−C bonds, presumably due to unfavorable steric interactions and competing isomerizations of tertiary alkyl metal intermediates. Reported herein is a Ni-catalyzed migratory 3,3-difluoroallylation of unactivated alkyl bromides at remote tertiary centers. This approach enables the facile construction of otherwise difficult to prepare all-carbon quaternary centers. Key to the success of this transformation is an unusual remote functionalization via chain walking to the most sterically hindered tertiary C(sp3) center of the substrate. Preliminary mechanistic and radical trapping studies with primary alkyl bromides suggest a unique mode of tertiary C-radical generation through chain-walking followed by Ni–C bond homolysis. This strategy is complementary to the existing coupling protocols with tert-alkyl organometallic or -alkyl halide reagents, and it enables the expedient formation of quaternary centers from easily available starting materials.

Alkoxyamines Designed as Potential Drugs against Plasmodium and Schistosoma Parasites

Malaria and schistosomiasis are major infectious causes of morbidity and mortality in the tropical and sub-tropical areas. Due to the widespread drug resistance of the parasites, the availability of new efficient and affordable drugs for these endemic pathologies is now a critical public health issue. In this study, we report the design, the synthesis and the preliminary biological evaluation of a series of alkoxyamine derivatives as potential drugs against Plasmodium and Schistosoma parasites. The compounds (RS/SR)-2F, (RR/SS)-2F, and 8F, having IC50 values in nanomolar range against drug-resistant P. falciparum strains, but also five other alkoxyamines, inducing the death of all adult worms of S. mansoni in only 1 h, can be considered as interesting chemical starting points of the series for improvement of the activity, and further structure activity, relationship studies. Moreover, investigation of the mode of action and the rate constants kd for C-ON bond homolysis of new alkoxyamines is reported, showing a possible alkyl radical mediated biological activity. A theoretical chemistry study allowed us to design new structures of alkoxyamines in order to improve the selectivity index of these drugs.