Reproduction in Urbanised Coastal Waters: Shallow-Water Sea Anemones (Entacmaea quadricolor and Stichodactyla haddoni) Maintain High Genetic Diversity and Panmixia

Sea anemones are sedentary marine animals that tend to disperse via planktonic larvae and are predicted to have high population connectivity in undisturbed habitats. We test whether two sea anemone species living in two different tidal zones of a highly disturbed marine environment can maintain high genetic connectivity. More than 1000 loci with single-nucleotide polymorphisms (SNPs) were obtained with double-digest RADseq for 81 Stichodactyla haddoni and 99 Entacmaea quadricolor individuals to test for population genetic structure. We find evidence that both species predominantly propagate via sexual reproduction, and asexual reproduction is limited. We observe panmixia that indicates the absence of effective dispersal barriers for these species living in a highly anthropogenically disturbed environment. This is positive news for both species that are also found in the aquarium trade. More fundamentally, our results suggest that inhabiting different parts of a shallow reef may not affect a species’ population connectivity nor favour asexual reproduction.

Learning the pattern of epistasis linking genotype and phenotype in a protein

Understanding the pattern of epistasis—the non-independence of mutations—is critical for relating genotype and phenotype. However, the combinatorial complexity of potential epistatic interactions has severely limited the analysis of this problem. Using new mutational approaches, we report a comprehensive experimental study of all 213 mutants that link two phenotypically distinct variants of the Entacmaea quadricolor fluorescent protein—an opportunity to examine epistasis up to the 13th order. The data show the existence of many high-order epistatic interactions between mutations, but also reveal extraordinary sparsity, enabling novel experimental and computational strategies for learning the relevant epistasis. We demonstrate that such information, in turn, can be used to accurately predict phenotypes in practical situations where the number of measurements is limited. Finally, we show how the observed epistasis shapes the solution space of single-mutation trajectories between the parental fluorescent proteins, informative about the protein’s evolutionary potential. This work provides conceptual and experimental strategies to profoundly characterize epistasis in a protein, relevant to both natural and laboratory evolution.

The Ecological Importance of Toxicity: Sea Anemones Maintain Toxic Defence When Bleached

Cnidarians are amongst the most venomous animals on the planet. They are also under significant threat due to the impacts of climate change. Corals and anemones undergo climate-induced bleaching during extreme environmental conditions, where a loss of symbiotic photosynthetic algae (zooxanthellae) causes whitening in colour, loss of internal food supply, and reduction in health, which can ultimately lead to death. What has yet to be determined is whether bleaching causes a reduction in the production or quality of venom. In this study, the sea anemone Entacmaea quadricolor was exposed to long-term light-induced bleaching to examine the effect that bleaching has on venom. Venom quality and quantity, as determined through lethality and haemolysis measures and nematocyst production was highly preserved over the five-month imposed bleaching event. Maintenance of venom and nematocyst production, despite a loss of an internal food source provided by endosymbiotic algae, indicates both the ecological importance of maintaining toxicity and a remarkable resilience that anemones have to major environmental stressors.

Learning the pattern of epistasis linking genotype and phenotype in a protein

Understanding the pattern of epistasis – the non-independence of mutations – is critical for relating genotype and phenotype in biological systems. However, the complexity of potential epistatic interactions has limited approaches to this problem at any level. To develop practical strategies, we carried out a comprehensive experimental study of epistasis between all mutations that link two phenotypically distinct variants of the Entacmaea quadricolor fluorescent protein. The data demonstrate significant high-order epistatic interactions between mutations, but also reveals extraordinary sparsity, enabling novel experimental strategies and sequence-based statistical methods for learning the relevant epistasis. The sequence space linking the parental fluorescent proteins is functionally connected through paths of single mutations; thus, high-order epistasis in proteins is consistent with evolution through stepwise variation and selection. This work initiates a path towards characterizing epistasis in proteins in general.

Range extensions in anemonefishes and host sea anemones in eastern Australia: potential constraints to tropicalisation

Species distributions at range edges show complex shifts with climate change. The present study examined anemonefish and host sea anemone abundance at their southern distribution limits on the eastern coast of Australia, to identify factors influencing the geographic responses of the symbiosis. Roaming surveys (30min) were conducted at 21 sites (~30.01–30.95°S) on rocky reefs in a tropical–temperate transition zone. Two species of host anemones (Entacmaea quadricolor and Heteractis crispa) and anemonefishes (Amphiprion akindynos and A. latezonatus) were found, along with Dascyllus trimaculatus. Nearly all anemones and anemonefishes (>99.5%) were associated with vegetated islands and rocky islets, and abundance was influenced by seawater temperature. Greater numbers of H. crispa and A. akindynos than E. quadricolor and A. latezonatus were found; however, most A. akindynos were juveniles. H. crispa provided nursery habitat for both fishes, whereas adult fishes utilised only E. quadricolor. A southern range extension was found for E. quadricolor, and overwintering of A. latezonatus had extended poleward since the mid-1990s. The paucity of islands and rocky islets south of our surveys, and host-usage patterns, could constrain future range extensions. These findings showed climate-driven latitudinal shifts are complex and are likely to be variably constrained for different species.