Earth Observation via Compressive Sensing: The Effect of Satellite Motion

In the framework of earth observation for scientific purposes, we consider a multiband spatial compressive sensing (CS) acquisition system, based on a pushbroom scanning. We conduct a series of analyses to address the effects of the satellite movement on its performance in a context of a future space mission aimed at monitoring the cryosphere. We initially apply the state-of-the-art techniques of CS to static images, and evaluate the reconstruction errors on representative scenes of the earth. We then extend the reconstruction algorithms to pushframe acquisitions, i.e., static images processed line-by-line, and pushbroom acquisitions, i.e., moving frames, which consider the payload displacement during acquisition. A parallel analysis on the classical pushbroom acquisition strategy is also performed for comparison. Design guidelines following this analysis are then provided.

Shift from Acquisitive to Conservative Root Resource Acquisition Strategy Associated with Increasing Tree Age: A Case Study of Fraxinus mandshurica

Tree age has an important effect on the form and function of fine roots. Previous studies have focused on the variations in root morphological and chemical traits among tree ages, while less attention has been given to the physiological traits, impeding a full understanding of the relationship between root resource acquisition strategy and tree age. Here, we measured root morphological (diameter, specific root length, specific root area and tissue density), chemical (nitrogen concentration) and physiological (respiration and exudation rate) traits of young, middle-aged and mature trees of Fraxinus mandshurica in a temperate secondary forest in northeastern China. Our overall aim was to determine how root traits and related resource acquisition strategy change with tree age. The results showed that from young to mature trees, root diameter gradually increased, but specific root length, specific root area, root nitrogen concentration, respiration and exudation rates all decreased, and the significant differences were mainly found between young and mature trees. Pearson’s correlation analysis revealed that the relationships of root respiration and exudation rates to root morphological and chemical traits depended on tree age and the specific traits examined, but these correlations were all significant except for root tissue density when the data were pooled across all tree age classes. Principal component analysis (PCA) showed that the conservative traits represented by root diameter, and the acquisitive traits such as root respiration and exudation rates and related morphological and chemical traits, occupied two ends of the first axis, respectively, while root tissue density occupied one end of the second axis, partially confirming the conceptual framework of “root economics space”. Standardized major axis (SMA) analysis of root exudation and respiration rates showed that young trees allocated more root carbon flux to the formation of root exudation, compared to middle-aged and mature trees. Our findings suggest that root resource acquisition strategy in F. mandshurica appears to shift from an absorptive to conservative strategy associated with increasing tree age, which may have substantial consequences for individual growth and interspecific competition, as well as belowground carbon allocation in ecosystems.

Novel Real-Time Library Search driven data acquisition strategy for identification and characterization of metabolites.

Identification and structural characterization of novel metabolites in drug discovery or metabolomics experiments is one of the most challenging tasks. Multi-level fragmentation (MSn) based approaches combined with various dissociation modes are frequently utilized for facilitating structure assignment of the unknown compounds. As each of the MS precursors undergoes MSn, the instrument cycle time can limit the total number of precursors analyzed in a single run for complex samples. This necessitates splitting data acquisition into several LC/MS analyses where the results obtained in one acquisition inform the experimental design for the successive experiment. Here we present a new LC/MS data acquisition strategy, termed Met-IQ, where the decision to perform an MSn acquisition is automatically made in real time based on the similarity between an acquired experimental MS2 spectrum and a spectrum in a reference spectral library. Each MS2 spectrum is searched in real time against the spectra for the known compounds of interest. If a similarity to a spectrum in the library is found, the instrument performs a decision-dependent event, such as an MS3 scan. Compared to an intensity-based, data-dependent MSn experiment, only a selective number of MS3 are triggered using Met-IQ, increasing the overall MS2 instrument sampling rate. We applied this strategy to an Amprenavir sample incubated with human liver microsomes. The number of MS2 scan events increased nearly 3.5-fold compared to the standard data dependent experiment where MS3 was triggered for each precursor ion, resulting in identification and structural characterization of 55% more unique metabolites. Furthermore, the MS3 precursor fragments were selected intelligently, focusing on higher mass fragments of sufficient intensity to maximize acquisition of MS3 data relevant for structure assignment. The described Met-IQ strategy is not limited to metabolism experiments, and can be applied to analytical samples where the detection of unknown compounds structurally related to a known compound(s) is sought.

Systems-of-Systems MS&A for Complex Systems, Gaming and Decision for Space Systems

This chapter discusses advanced modeling, simulation and analysis (MS&A) approaches for supporting complex space system, gaming and decision support system (DSS) using systems-of-systems perspective. The systems-of-systems MS&A approaches presented here also address capability-based approach for supporting US defense acquisition life cycle with a laser focus on the pre-award acquisition phase and combined game theory and wargaming for acquiring complex defense space systems. The chapter also provides an overview of existing models and tools for the design, analysis and development of the government reference system architecture solution and corresponding acquisition strategy in a complex defense systems-of-systems environment. Although, the proposed MS&A approaches presented here are focused on defense space systems, but the approaches are flexible and robust that can be extended to any civilian and commercial applications.

A Data-Dependent Acquisition Ladder for Ultrasensitive (Neuro)Proteomics

Measurement of broad types of proteins from a small number of cells to single cells would help to better understand the nervous system but requires significant leaps in high-resolution mass spectrometry (HRMS) sensitivity. Microanalytical capillary electrophoresis electrospray ionization (microCE-ESI) offers a path to ultrasensitive proteomics by integrating scalability with sensitivity. We report here a data acquisition strategy that expands the detectable and quantifiable proteome in trace amounts of digests using microCE-ESI-HRMS. Data-dependent acquisition (DDA) was programmed to progressively exclude high-intensity peptide signals during repeated measurements. These nested experiments formed rungs of our DDA ladder. The method was tested for replicates analyzing ~500 pg of protein digest from cultured hippocampal (primary) neurons (mouse), which estimates to the total amount of protein from a single neuron. Analysis of net amounts approximating to ~10 neurons identified 428 nonredundant proteins (415 quantified), an ~35% increase over traditional DDA. The identified proteins were enriched in neuronal marker genes and molecular pathways of neurobiological importance. The DDA ladder deepens the detectable proteome from trace amounts of proteins, expanding the analytical toolbox of neuroscience.