Haplotype divergence supports long-term asexuality in the oribatid mite Oppiella nova

Sex strongly impacts genome evolution via recombination and segregation. In the absence of these processes, haplotypes within lineages of diploid organisms are predicted to accumulate mutations independently of each other and diverge over time. This so-called “Meselson effect” is regarded as a strong indicator of the long-term evolution under obligate asexuality. Here, we present genomic and transcriptomic data of three populations of the asexual oribatid mite species Oppiella nova and its sexual relative Oppiella subpectinata. We document strikingly different patterns of haplotype divergence between the two species, strongly supporting Meselson effect–like evolution and long-term asexuality in O. nova: I) variation within individuals exceeds variation between populations in O. nova but vice versa in O. subpectinata; II) two O. nova sublineages feature a high proportion of lineage-specific heterozygous single-nucleotide polymorphisms (SNPs), indicating that haplotypes continued to diverge after lineage separation; III) the deepest split in gene trees generally separates the two haplotypes in O. nova, but populations in O. subpectinata; and IV) the topologies of the two haplotype trees match each other. Our findings provide positive evidence for the absence of canonical sex over evolutionary time in O. nova and suggest that asexual oribatid mites can escape the dead-end fate usually associated with asexual lineages.

Variation in Community-Level Trophic Niches of Soil Microarthropods With Conversion of Tropical Rainforest Into Plantation Systems as Indicated by Stable Isotopes (15N, 13C)

Land-use change is threatening biodiversity worldwide and is predicted to increase in the next decades, especially in tropical regions. Most studies focused on the response of single or few species to land-use change, only few investigated the response of entire communities. In particular the response of belowground communities to changes in land use received little attention. Oribatid mites (Oribatida, Acari) are among the most abundant soil animals, involved in decomposition processes and nutrient cycling. Oribatid mite species span a wide range of trophic niches and are known to sensitively respond to changes in land use. Here, we investigated shifts in the community-level trophic niche of oribatid mites with the conversion of rainforest into rubber and oil palm plantations. Due to a wider range of resources in more natural ecosystems, we expected the community-level trophic niche to shrink with conversion of rainforest into plantations. As the conversion of rainforest into plantations is associated with reduced availability of litter resources, we expected the average trophic level (indicated by the 15N/14N ratio) to be higher and basal resources (indicated by the 13C/12C ratio) to shift toward living plant material in rubber and oil palm plantations. Our analysis showed that community-level trophic niches in rainforest and rubber agroforest (“jungle rubber”) were separated from those in monoculture plantation systems, indicating a trophic niche shift with land-use intensification. As hypothesized, oribatid mites shifted their diet toward predation and/or scavenging and toward the plant-based energy channel with transformation of rainforest into plantations. Exceptionally low minimum 13C/12C ratios in rubber plantations suggest that certain oribatid mite species in this land-use system use resources not available in the other studied ecosystems. We detected high isotopic uniqueness in oil palm plantations suggesting a low trophic redundancy and thus high vulnerability of trophic functioning in this system in comparison to rainforest. Overall, the results suggest that the conversion of rainforest into plantations is associated with pronounced shifts in community-level trophic niches of mesofauna detritivores with potential major consequences for the functioning of the decomposer system.

The first report of Xenillus salamoni Mahunka 1996 (Acari: Oribatida) in Poland, with the key to European Xenillus

During ecological studies carried out in the Drawa National Park, an oribatid mite species, Xenillus salamoni Mahunka 1996 (Liacaridae), new for Poland was found. This species is known only from Hungary and from the Central Alps and it is considered as xerophilous and a forest taxon. Additionally, a key to the identification of European Xenillus species was prepared.

Oribatid mite communities in mountain scree: stable isotopes (15N, 13C) reveal three trophic levels of exclusively sexual species

Mountain scree habitats are intermediate habitats between the base of the soil and the bedrock. They are composed of a network of small cracks and voids, and are commonly situated at the lower levels of scree slopes. Their environment is defined by empty spaces inside the scree, the absence of light and photoperiod, low temperature, and resource poor conditions. Soil arthropod communities, their trophic structure as well as their use of basal resources in mountain scree are little studied despite the fact that they are important components of these systems. Here, we investigate stable isotope ratios (15N/14N, 13C/12C) of oribatid mites (Oribatida, Acari) to understand their trophic niches and their variation with depth (50 and 75 cm) at two mountain scree sites (Cerdacul Stanciului, Marele Grohotis) in the Romanian Carpathians. Further, we used existing data to investigate the reproductive mode of the species in that habitat, as this may be related to resource availability. We hypothesized that trophic niches of oribatid mites will not differ between the two mountain scree regions but will be affected by depth. We furthermore hypothesized that due to the resource poor conditions oribatid mite species will span a narrow range of trophic levels, and that species are sexual rather than parthenogenetic. Our results showed that (1) oribatid mite trophic structure only slightly differed between the two sites indicating that the trophic ecology of oribatid mites in scree habitats is consistent and predictable, (2) oribatid mite trophic structure did not differ between the two studied soil depths indicating that the structure and availability of resources that were used by oribatid mites in deeper scree habitats varies little with depth, (3) oribatid mite species spanned only three trophic levels indicating that the habitat is rather resource poor, and (4) that all studied oribatid mite species were sexual supporting the view that resource poor conditions favour sexual reproduction.

TAXONOMIC CONTRIBUTION TO THE KNOWLEDGE OF THE ORIBATID MITE GENUS NEORIBATES (ACARI, ORIBATIDA, PARAKALUMMIDAE)

A new oribatid mite species of the genus Neoribates (Oribatida, Parakalummidae) is described from Bolivia. A new generic diagnosis and an identification key to the known species of the aforementioned genus from the Neotropical region are provided.

Haplotype divergence supports ancient asexuality in the oribatid mite Oppiella nova

Sex strongly impacts genome evolution via recombination and segregation. In the absence of these processes, haplotypes within lineages of diploid organisms are predicted to accumulate mutations independently of each other and diverge over time. This so-called ‘Meselson effect’ is regarded as a strong indicator of the long-term evolution under obligate asexuality. Here, we present genomic and transcriptomic data of three populations of the asexual oribatid mite species Oppiella nova and its sexual relative Oppiella subpectinata. We document strikingly different patterns of haplotype divergence between the two species, strongly supporting Meselson effect like evolution and ancient asexuality in O. nova: (I) Variation within individuals exceeds variation between populations in O. nova but vice versa in O. subpectinata. (II) Two O. nova sub-lineages feature a high proportion of heterozygous genotypes and lineage-specific haplotypes, indicating that haplotypes diverged independently within the two lineages after their split. (III) The deepest split in gene trees generally separates haplotypes in O. nova, but populations in O. subpectinata. (IV) Tree topologies of the two haplotypes match each other. Our findings provide positive evidence for the absence of sex over evolutionary time in O. nova and suggest that asexual oribatid mites can escape the dead-end fate usually associated with asexual lineages.

Two remarkable new species of oribatid mites (Acari: Oribatida) from Acacia litter of Kerala, India

Two new oribatid mite species viz. Papillacarus (Vepracarus) acaciensis sp. nov. and Licneremaeus indicus sp. nov. belonging to the respective oribatid families, Lohmanniidae and Licneremaeidae are described and illustrated. Specimens of both species were collected from litter of Acacia auriculiformis Benth. (Leguminosae) growing in different localities of the Calicut University Campus, Malappuram Dt. of Kerala. The family Licneremaeidae is recorded for the first time from India. Identification keys to all known species of the nominative subgenus Vepracarus and the genus Licneremaeus are also provided.

A new species of the genus Paralycus from Fujian, China

A new oribatid mite species of the family Pediculochelidae, Paralycus nortoni sp. nov., is described and illustrated based on adult specimens collected from barks of dead Pinus massoniana Lamb. infested by Monochamus alternatus in Fuzhou city, China. This new species described here is the fourth species of the genus Paralycus in China. An updated key to the species of the genus Paralycus is provided.

Get a grip—evolution of claw shape in relation to microhabitat use in intertidal arthropods (Acari, Oribatida)

Claws may be the most common biological attachment devices in animals but relatively few studies have examined the ecological and evolutionary significance of their morphology. We performed the first geometric morphometric investigation of arthropod claws using 15 intertidal oribatid mite species from two different families living in three different habitat types to determine if claw shape is correlated with ecology. Our results show that species living on rocky shores show remarkably high and strongly curved claws while species from mangrove habitats show significantly lower and less curved claws. Euryoecious species are able to dwell in a wide range of habitats and show an intermediate claw type. These results indicate a strong relationship between claw shape and microhabitat and the best predictors of microhabitat use seem to be claw height and curvature. Claw length varied to some degree among the species but without any noticeable ecological pattern. A comparison with terrestrial and freshwater aquatic oribatid mite species, on the other hand, confirms that their claws are only half as long as that of intertidal mites and it is suggested that tidal flooding and wave action strongly selects for long claws. In this microarthropod group which occupies a vast array of microhabitats, claw morphology may play an important role in niche separation and hence demonstrate the importance of ecomorphological studies.