Treatment with medications during pregnancy and lactation is a challenge and needs to balance the risk of untreated maternal disease against any possible harm to the foetus or child. Indications for treatment are control of disease activity and ensuring a healthy pregnancy and healthy child outcomes. Administration of the following drugs is compatible with pregnancy: non-steroidal anti-inflammatory drugs (non-selective COX inhibitors until gestational week 32), glucocorticoids (preferentially at low dose), antimalarials, sulfasalazine, azathioprine (AZA), cyclosporine, tacrolimus, colchicine, and intravenous immunoglobulin. Methotrexate, mycophenolate mofetil, and cyclophosphamide require discontinuation before conception due to proven teratogenicity. Among biologics tumour necrosis factor (TNF) inhibitors are best studied and appear reasonably safe preconceptionally, during pregnancy, and lactation; for other biologics foetal safety has not yet been established. The pregnancy compatibility of medications administered for comorbidities must be assessed. Except for cyclophosphamide other immunosuppressives are compatible with fatherhood.