A study of composition and diversity variation of avifauna along with different types of agroforestry system in Kibet town, Southern Ethiopia

Background Agroforestry is an integrated land-use system that plays a great role in the conservation of landscape biodiversity. The study aimed to assess the composition and diversity of avian species along with different habitat types of agroforestry in Kibet Town, Southern Ethiopia. Methods Four habitat types of agroforestry system which are home gardens, live fences, parkland, and eucalyptus woodlot were identified. Line transects were used for bird surveys. The Shannon diversity index (H′) and species evenness index (E) were used to compare diversity among habitat types. A similarity percentages (SIMPER) test was carried out to identify the main species and feeding guild that typified each habitat type. The overall significance was assessed with the ANOSIM test using PAST (version 4.03). Results A total of 50 bird species belonging to 28 families and 10 orders were recorded. Order Passeriformes (67.3%) had the highest number of species. Bird community composition differed among habitat types. The dissimilarity was mainly due to White-browed robin-chat (Cossypha heuglini), Streaky seed-eater (Serinus striolatus), Village Weaver (Ploceus cucullatus), African Paradise-Flycatcher (Terpsiphone viridis), and Black-Headed Paradise Flycatcher (T. rufiventer). The finding also revealed that insectivore was the dominant feeding guild. Conclusions The present study shows evidence that more insectivore bird species use different types of agroforestry as habitat and foraging sites. So, any concerned bodies who have engaged in avian conservation should give special consideration to this modified landscape.

World-level ecologists in Chile: Oldtimers, newcomers, and the bypassed

Background A team of 3 scientometrists led by John Ioannidis published in 2020 an extensive and updated database (ca. 6.9 million researchers in 22 disciplines and 176 sub-disciplines), ordering them according to a composite bibliometric index that measures their whole trajectory (career-long) impact and their annual impact at year 2019. They reported the top 100,000 scientists (1.45% across all disciplinary fields) or the top 2% of each subfield discipline, thus publishing the ranking of ca. 150,000 researchers worldwide. Methods and findings We filtered that information for the disciplinary and sub-disciplinary areas corresponding to Ecology and identified a total of 14 ecologists with residence in Chile that appear in either of those two worldwide rankings. We report their measured productivity as both whole trajectory (career-long) and as annual impact at year 2019. We attribute their high registered productivity to their training at the doctoral level in prestigious foreign universities, their academic positions in internationally recognized Chilean universities, and their participation in state-funded research centers of scientific excellence. Exceptions to the rule are presented. Conclusions The 14 ecologists identified with the scientometric algorithm proposed by Ioannidis and coworkers include, but are not restricted, to the most cited ecologists in Chile. We put forth possible reasons for some puzzling omissions from these rankings.

Was Chagas disease responsible for Darwin’s illness? The overlooked eco-epidemiological context in Chile

The source of Darwin’s illness has been a contentious issue in the literature for almost 70 years. Different causal factors have been invoked to account for his symptoms, including Chagas disease. The Chagas hypothesis is based upon Darwin’s diary, in which he narrates his experience with kissing bugs, the main vector of the protozoan Trypanosoma cruzi, the etiological agent of Chagas disease. In this contribution, we examine the consistency of the “Chagas disease hypothesis” in the light of current ecological and epidemiological knowledge of the disease in Chile. According to his diary and letters, during his overland trips, Darwin slept in rural houses and outdoors for 128 days in a “hyperendemic” area for Chagas disease, more than exposing him to kissing bugs. This observation conveys a likely additional source of infection than previously considered, which might reinforce the idea that Chagas disease contributed to Darwin’s manifest physical deterioration.

Structure, composition and carbon stocks of woody plant community in assisted and unassisted ecological succession in a Tamaulipan thornscrub, Mexico

Background Ecological restoration is a process that helps the recovery of an ecosystem that has been degraded, damaged or destroyed. The success of restoration actions depend on the understanding of the processes, mechanisms and factors that guide vegetation dynamics. The restoration of plant communities can be made by unassisted (passive restoration, where the community recover by itself) and assisted (active restoration) ecological succession. It is imperative to know the scope of both types of activities to guide future restoration actions by evaluating the properties and functioning of the intervened communities. Methods Variance analysis of the carbon (C) stocks, basal area, canopy area, Shannon–Weaver index values, specific richness and abundance of three Tamaulipan thornscrub communities (assisted natural succession area, unassisted natural succession area and control area) was performed. Furthermore, a similarity analysis between the sampling areas using the floristic composition (abundance) was performed. Results In total, 11 families, 17 genera and 20 species of vascular plants were registered. The richness of species and abundance ranked as follows per area: assisted ecological natural succession > control > unassisted ecological natural succession. The species composition between sampling areas showed a low number of common species between plant communities. Conclusions The values of species richness, diversity, abundance, basal area, and canopy area of the assisted natural succession vegetal community was statistical similar to the control plan community. The values of C stocks showed that assisted ecological succession could recover not only structure and composition attributes but also this key ecosystem property.

A comprehensive overview of the genetic diversity in Thylamys elegans (Didelphimorphia: Didelphidae): establishing the phylogeographic determinants

Background For the genus Thylamys, the rivers have been reported as barriers to dispersal, limiting current and historical distribution of its lineages. We hypothesized that the Maipo river has affected the genetic structure of northern and southern lineages of Thylamys elegans, recovering a phylogenetic relationships with reciprocally monophyletic sister groups on opposite river banks. We evaluated the role of other rivers in the Mediterranean zone of Chile as historical and recent modulators of the biogeographic processes of this species. Methods We applied a phylogeographic approach, using the cytochrome-b mitochondrial gene for 93 individuals of T. elegans, from 37 localities in a latitudinal gradient between 21°25’ and 35˚56’S, encompassing a geographic area between the Atacama Desert and most of the Mediterranean Chilean zone. Results The phylogenetics results recovered six lineages within T. elegans: Thylamys elegans elegans, Thylamys elegans coquimbensis, the Loa lineage and three other lineages not described previously (Aconcagua, South 1 and South 2). We suggest that following rivers play a role like primary barrier: the Maipo river in the genetic differentiation of northern and southern ancestral lineages, and the Mataquito river and its tributary Teno river for the South 1 and South 2 lineages. On the other hand, the Quilimarí river preserve the genetic divergence in T. e. coquimbensis and Aconcagua lineage and the Aconcagua river in Aconcagua lineage and T. e. elegans acting like secondary barriers. Conclusions We concluded that the genetic diversity and biogeographic history of T. elegans was shaped by mountain glaciers, changes in river water levels during the Pleistocene glaciations and hyperaridity, promoting the differentiation and persistance of the T. elegans lineages.

Are Latin American ecologists recognized at the world level? A global comparison

Background Ioannidis et al. (2020) reported a standardized estimate of scientific productivity obtained from a worldwide database of 6,880,389 scientists who published at least 5 papers picked up by the Scopus database, and elaborated a ranking of ca. 120,000 scientists by both whole trajectory (career-long) impact and their current impact at year 2019. The goal of our paper is to contextualize Latin American ecologists’ contribution at the world level based on the four most scientifically productive countries in the region. Methods and findings Ioannidis et al. (2020) proposed a composite index that is the sum of six scientometric indicators: (1) The number of allocites, (2) the h index, (3) a per capita corrected version of h, (4) the allocites received as single author, (5) those received as single + first author, and (6) those as single + first + last author. We selected data for ecologists from Argentina, Brazil, Chile, and Mexico and comparatively analyzed their productivity according to the proposed index. We also compared these data with those obtained from a global sample of the top ecologists worldwide. Conclusions Based on Ioannidis et al.’s proposition to evaluate scientific productivity we extract three lessons: (1) It does not pay to publish many papers; what counts is the number of allocites (i.e., self-citations do not add up). (2) Either be single, first, or last author; it does not pay to be in the middle of an authorship line. (3) Even worse it is to be among many co-authors because the proposed index allocates credits on a per capita basis.

A new geographic record of the endangered Telmatobufo venustus (Amphibia: Calyptocephalellidae) in the Biobío Region, Chile

We document the record of Telmatobufo venustus Phillipi (1899) in the Altos de Malalcura sector, Antuco, Biobío Region, Chile. This is the first record metamorphic Gosner 45 stage and the fourth georeferenced record of the species throughout its distribution. The data extend the presence of the species in the Biobío Region by more than 100 km, extending T. venustus to north of the Ralco Reserve. The presence of three metamorphic stage individuals and their coexistence with Alsodes sp. in this locality stands out.

The microbial world in a changing environment

Background In this article we would like to touch on the key role played by the microbiota in the maintenance of a sustainable environment in the entire planet. For obvious reasons, this article does not intend to review thoroughly this extremely complex topic, but rather to focus on the main threats that this natural scenario is presently facing. Methods Recent literature survey. Results Despite the relevance of microorganisms have in our planet, the effects of climate change on microbial communities have been scarcely and not systematically addressed in literature. Although the role of microorganisms in emissions of greenhouse gases has received some attention, there are several microbial processes that are affected by climate change with consequences that are presently under assessment. Among them, host-pathogen interactions, the microbiome of built environment, or relations among plants and beneficial microbes. Conclusions Further research is required to advance in knowledge of the effect of climate change on microbial communities. One of the main targets should be a complete evaluation of the global microbial functional diversity and the design of new strategies to cope with limitations in methods to grow microorganisms in the laboratory. These efforts should contribute to raise a general public awareness on the major role played by the microbiota on the various Earth ecosystems.

Macrofauna community patterns in a Chiloe Island channel used intensely for aquaculture: the ecological status of its benthic environment

Background It is known that aquaculture may produce negative environmental effects on marine ecosystems. Southern Chile is one of the most important salmon and mussel-producing areas in the world. Here we assess the ecological status of benthic communities near farming centers in Caucahue Channel, Chiloe, which has been used intensely for salmon and mussel production for 30 years. Methods The macrofauna, sediments and water column were characterized at distances of 5 to 100 m from three salmon and three mussel-producing centers. Information was also obtained from reference sites 500 to 3000 m from these aquaculture farms. The macrofauna and environmental conditions during winter were analyzed using uni- and multivariate analysis and the AZTI Marine Biotic Index (AMBI) as an indicator of benthic community condition. Results (i) There is a high degree of spatial dissimilarity in macrofauna and environmental variables among sampling sites and types of environments (far from or near farming centers) and between the northern and southern areas of the channel; (ii) sediment structure (mean grain size and percentage of total organic matter) correlated with the observed dissimilarities in macrofauna communities; and (iii) the level of perturbation according to AMBI was heterogeneous, with sites in the undisturbed/normal range to moderately disturbed/polluted. Conclusions We found a high spatial dissimilarity in benthic macrofauna and environmental variables among sampling sites, environmental types and between the northern and southern areas of the channel. AMBI and multivariate community-environment analysis are useful tools to define the level of perturbation of a geographic area at different spatial scales, using all the ecological information from each sample and replicates.

Few self-citations among Chilean ecologists

Background We determine the occurrence of self-citations among 36 Chilean ecologists with the highest h index values recorded in Web of Science. Because the practice of self-citation is perceived as negative by inflating a given researcher’s impact factor, we evaluate if those ecologists (five of them having been awarded the National Prize in Natural Sciences) tend unduly to self-citation, or alternately, receive citations from others ostensibly because their peers recognize their theoretical and empirical output. Methods and findings We use a recently proposed self-citation estimate easily calculated from h index values recorded in the restricted-access Web of Science (Wos) database and the open-access Google Scholar’s (GS) Researcher Profiles and compare these metrics. Conclusions The Chilean ecologists showed low self-citation values, independently of their status as National Prize awardees. Their publications were highly cited by unrelated peers, likely on account of their novelty or quality. Among middle-aged (50–60 year) and young (< 50 year) Chilean ecologists open-access GS h index values are significantly correlated with those from WoS, thus rendering expeditious this method of citation assessment.