Book reviewISCN 2013: An International System for Human Cytogenetic Nomenclature (2013). ShafferLG, McGowan-JordanJ, SchmidM, editors. Published in collaboration with Cytogenetic and Genome Research by Karger, Basel. VI and 140 pp. plus fold-out, 11 Fig.

2013 ◽  
Vol 161 (8) ◽  
pp. 2108-2109
Author(s):  
John M. Opitz
Blood ◽  
2006 ◽  
Vol 108 (12) ◽  
pp. 3952-3953 ◽  
Author(s):  
Juan Ramon Gonzalez Garcia ◽  
Juan Pablo Meza-Espinoza

Author(s):  
Nida Anwar ◽  
Muhammad Nadeem ◽  
Sana Khurram ◽  
Naveena Fatima ◽  
Tahir Shamsi ◽  
...  

Abstract Objectives: To evaluate the presence and characteristics of additional karyotype abnormalities in chronic myeloid leukaemia cases. Method: The cross-sectional study was conducted at the Department of Cytogenetics and Molecular Pathology, National Institute of Blood Diseases and Bone Marrow Transplant, Karachi, from May 2010 to September 2016 and comprised diagnosed chronic myeloid leukaemiapatients regardless of age and gender.Baseline cytogenetic evaluation was done on overnight, 24-hrs un-stimulated and 72-hrs stimulated bone marrow cultures, and karyotypes were defined according to the International System for Human Cytogenetic Nomenclature2013. Data was analysed using SPSS 23. Results: There were 222 cases with a median age of 38 years (range: 12-84 years). The male-to-female ratio was 1.8:1. Chronic myeloid leukaemiawas detected in 18(8.1%) patients havingadditional cytogenetic abnormalities. Among the patients found positive, cytogenetic type was minor in 10(55.55%), major 3(16.66%), complex 3(16.66%), and variant 2(11.11%). . Conclusion: Additional cytogenetic abnormalitieswere found in 8% of the sample. Key Words: Additional cytogenetic abnormalities, Chronic myelogenous leukaemia, Bone marrow, Cytogenetics.


Author(s):  
Nidhi P. Shah ◽  
Parth S. Shah ◽  
Nirzari H. Bhatt ◽  
Ketan K. Vaghasia ◽  
Krishna Mistry ◽  
...  

Background and Objectives: Aneuploidy is one of the major concerns to cause genetic anomalies. This condition is mostly related to addition and/or deletion with respect to set(s) of chromosomes. Here, we report an analysis of 5740 referral cases during three consecutive years (2015 – 2018) from our Diagnostic Research Center, Ahmedabad for aneuploidy pattern. Methodologies: The patients were asked to fill the necessary forms and their blood (5ml) was drawn for chromosomal studies using the Karyotyping following International System for Human Cytogenetic Nomenclature (ISCN) manual. Results: The data revealed the numerical aberrations for only aneuploidy detected was (3.7%; 211/5740). In this report, constitutional (c) autosomal aneuploidy was 75% (158/211). The total mosaic cases were nine (9/211) comprising constitutive (2) and acquired (7) aneuploidy cases. In autosomal aneuploidy, cT21 was higher (96%; 152/158) than others (4%; 6/158) comparatively. Among cT21 (152), males (76%; 115/152) were more affected than females (24%; 37/152). These statistical data also revealed that acquired chromosomal aneuploidy (leukemia) possessed (25%; 53/211); with more mosaic cases (7/211). Conclusion: Couples with such conditions are eligible for genetic tests and counseling as well as new strategies are urgently to be undertaken by governmental organizations (GOs) and non-governmental organizations (NGOs) for affected families with better personalized and informed decision making. The significance of these data is thus discussed in relation to genetic disorders caused by constitutional and acquired aneuploidy of leukemic blood in this report.


2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Thomas Liehr

Abstract Background The Genome Reference Consortium (GRC) has according to its own statement the “mission to improve the human reference genome assembly, correcting errors and adding sequence to ensure it provides the best representation of the human genome to meet basic and clinical research needs”. Data from GRC is included in genome browsers like UCSC (University of California, Santa Cruz), Ensembl or NCBI (National Center for Biotechnology Information) and are thereby bases for scientific and diagnostically working human genetic community. Method Here long standing knowledge deriving from classical molecular genetic, cytogenetic and molecular cytogenetic data, not being considered yet by GRC was revisited. Results There were three major points identified: (1) GRC missed to including three chromosomal subbands, each, for 1q32.1, 2p21, 5q13.2, 6p22.3 and 6q21, which were defined by International System for Human Cytogenetic Nomenclature (ISCN) already back in 1980s; instead GRC included additional 6 subbands not ever recognized by ISCN. (2) GRC defined 34 chromosomal subbands of 0.1 to 0.9 Mb in size, while it is general agreement of cytogeneticists that it unlikely to detect chromosomal aberrations below 1–2 Mb in size by GTG-banding. And (3): still all sequences used in molecular cytogenetic routine diagnostics to detect heterochromatic and/ or pericentromeric satellite DNA sequences within the human genome are not included yet into human reference genome. For those sequences, localization and approximate sizes have been determined in the 1970s to 1990, and if included at least ~ 100 Mb of the human genome sequence could be added to the genome browsers. Conclusion Overall, taking into account the here mentioned points and correcting and including the data will definitely provide to the still not being completely finished mapping of the human genome.


Author(s):  
Michelle Dolan ◽  
Betsy Hirsch

Cytogenetic testing is ordered in a wide range of clinical settings. The primary purpose is to evaluate for constitutional abnormalities. This chapter describes cytogenetic testing methodologies, such as microarray analysis, chromosome analysis, prenatal genetic testing, and fluorescence in situ hybridization, identifying their strengths and limitations, and details specimen processing. It summarizes commonly used nomenclature according to the International System for Human Cytogenetic Nomenclature. The chapter also discusses the criteria that laboratory genetic counselors use for reporting uncertain, novel, or ambiguous results.


Blood ◽  
2010 ◽  
Vol 116 (21) ◽  
pp. 2942-2942
Author(s):  
François Mullier ◽  
Sylvie Daliphard ◽  
Richard Garand ◽  
Mélanie Dekeyser ◽  
Yvan Cornet ◽  
...  

Abstract Abstract 2942 Introduction: In 2004, a variant of del(20q) was described in MDS, i.e. an isochromosome of the long arm of chromosome 20 with interstitial loss of material [ider(20q)]. At the present time, 40 cases of ider(20q) have been reported in hematological malignancies, i.e. twenty-nine in MDS. The reported frequency of ider(20q) compared to del(20q) in MDS and AML, is 0.49% versus 2.49% and 0.26% versus 2.63%, respectively. No specific morphological anomaly was reported for MDS with del(20q) or ider(20q). Del(20q) preferentially involved the erythroid and megakaryocytic precursors and was associated with elliptocytosis. The prognostic significance of del(20q) is generally considered as good with some controversy. Until now, the prognostic significance of ider(20q) remains debated. Aims: The discovery of highly dysplastic neutrophils with neutrophil erythrophagocytosis in a patient with MDS and ider(20q) prompted us to analyze and compare the morphology of blood (PB) and bone marrow (BM) cells in MDS patients with del(20q) or ider(20q). The second aim was to compare clinical features of patients with MDS associated with del(20q) and ider(20q). Materials and methods: 34 patients with MDS displaying del(20q) and/or ider(20q) were included in this retrospective multicentric study. May-Grunwald-Giemsa stained PB and BM smears were analyzed for dysplasia in the erythroid, myeloid and megakaryocytic lineages. All cases were revised independently by at least 2 cytologists from 2 or 3 centers. Cytogenetic analysis was performed at diagnosis on short term BM cultures using conventional techniques, and karyotypes were described according to the International System for Human Cytogenetic Nomenclature (ISCN 2009). When possible (n=20), metaphase and interphase FISH studies were performed on the same suspension as used for conventional cytogenetic analysis to confirm the presence of ider(20q) when cytogenetically suspected, to look for subclones with del(20q), and to establish the percentage of nuclei with ider(20q) and del(20q). All patients were followed from the date of clinical diagnosis to transformation in acute leukemia or death. The presence of autoimmune manifestations and the International Prognostic Scoring System (IPSS) were also registered. Results: For the first time, morphological abnormalities on PB and BM were found sensitive and specific for this recently described cytogenetic entity. Indeed, hypogranulated and vacuolized neutrophils and neutrophil erythrophagocytosis (Figure 1) were present on PB and BM in MDS with ider(20q), with a sensitivity ranging from 65% to 75%. Moreover, the sensitivity and specificity of a morphological score based on the assessment of 9 morphological criteria reached 70% and 90.5%, respectively, in MDS patients with isolated ider(20q). This score included hypogranular and vacuolized neutrophils (in association with non dysplastic neutrophils), hypogranular and vacuolized eosinophils (with sometimes difficult differentiation between neutrophils and eosinophils), neutrophil erythrophagocytosis, elliptocytosis and thrombocytophagocytosis on PB. Hypogranular and vacuolized neutrophils and eosinophils, erythrophagocytosis by neutrophils and deeply lobulated and hyperlobulated megakaryocytes (stag-horn-like) were observed in BM. In the present study, the outcome of patients with del(20q) and with ider(20q) was not statistically different. Indeed, the number of progressions and deaths was slightly higher in the ider(20q) group. However, the frequency of autoimmune manifestations (AIMs) in del(20q) and ider(20q) group were 9.5% (2/21) and 8% (1/13), respectively (p>0.05). The mean IPSS was 0.5 in both groups. The OS (p=0.3744) and PFS (p=0.2497) did not differ statistically in MDS with del(20q) and ider(20q). All deaths were related to the MDS except for one patient with ider(20q) whose dead was from unknown origin. The median OS and PFS were 68 and 65 months, respectively, in the ider(20q) group whereas they were not reached in the del(20q) group. Conclusion: We proposed a morphological score based mainly on hypogranulated and vacuolized neutrophils and neutrophil erythrophagocytosis on PB and BM which can be used to predict ider(20q) in MDS patients. The prognosis seems not to differ between MDS with ider(20q) and del(20q). Disclosures: No relevant conflicts of interest to declare.


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