Automated prescreening of MCI through deep learning models based on wearable inertial sensors data

Machine learning is a powerful tool for data classification and has been used to classify movement data recorded by wearable inertial sensors in general living and sports. Inertial sensors can provide valuable biofeedback in combat sports such as boxing; however, the use of such technology has not had a global uptake. If simple inertial sensor configurations can be used to automatically classify strike type, then cumbersome tasks such as video labelling can be bypassed and the foundation for automated workload monitoring of combat sport athletes is set. This investigation evaluates the classification performance of six different supervised machine learning models (tuned and untuned) when using two simple inertial sensor configurations (configuration 1—inertial sensor worn on both wrists; configuration 2—inertial sensor worn on both wrists and third thoracic vertebrae [T3]). When trained on one athlete, strike prediction accuracy was good using both configurations (sensor configuration 1 mean overall accuracy: 0.90 ± 0.12; sensor configuration 2 mean overall accuracy: 0.87 ± 0.09). There was no significant statistical difference in prediction accuracy between both configurations and tuned and untuned models (p > 0.05). Moreover, there was no significant statistical difference in computational training time for tuned and untuned models (p > 0.05). For sensor configuration 1, a support vector machine (SVM) model with a Gaussian rbf kernel performed the best (accuracy = 0.96), for sensor configuration 2, a multi-layered perceptron neural network (MLP-NN) model performed the best (accuracy = 0.98). Wearable inertial sensors can be used to accurately classify strike-type in boxing pad work, this means that cumbersome tasks such as video and notational analysis can be bypassed. Additionally, automated workload and performance monitoring of athletes throughout training camp is possible. Future investigations will evaluate the performance of this algorithm on a greater sample size and test the influence of impact window-size on prediction accuracy. Additionally, supervised machine learning models should be trained on data collected during sparring to see if high accuracy holds in a competition setting. This can help move closer towards automatic scoring in boxing.

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Human Daily Activity Recognition Performed Using Wearable Inertial Sensors Combined With Deep Learning Algorithms

IEEE Access ◽

10.1109/access.2020.3025938 ◽

2020 ◽

Vol 8 ◽

pp. 174105-174114

Author(s):

Chih-Ta Yen ◽

Jia-Xian Liao ◽

Yi-Kai Huang

Keyword(s):

Deep Learning ◽

Activity Recognition ◽

Daily Activity ◽

Inertial Sensors ◽

Learning Algorithms ◽

Wearable Inertial Sensors

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A Large-Scale Open Motion Dataset (KFall) and Benchmark Algorithms for Detecting Pre-impact Fall of the Elderly Using Wearable Inertial Sensors

Frontiers in Aging Neuroscience ◽

10.3389/fnagi.2021.692865 ◽

2021 ◽

Vol 13 ◽

Author(s):

Xiaoqun Yu ◽

Jaehyuk Jang ◽

Shuping Xiong

Keyword(s):

Support Vector Machine ◽

Deep Learning ◽

Injury Prevention ◽

Large Scale ◽

Inertial Sensors ◽

Fall Detection ◽

The Elderly ◽

Support Vector ◽

Wearable Inertial Sensors ◽

Scale Motion

Research on pre-impact fall detection with wearable inertial sensors (detecting fall accidents prior to body-ground impacts) has grown rapidly in the past decade due to its great potential for developing an on-demand fall-related injury prevention system. However, most researchers use their own datasets to develop fall detection algorithms and rarely make these datasets publicly available, which poses a challenge to fairly evaluate the performance of different algorithms on a common basis. Even though some open datasets have been established recently, most of them are impractical for pre-impact fall detection due to the lack of temporal labels for fall time and limited types of motions. In order to overcome these limitations, in this study, we proposed and publicly provided a large-scale motion dataset called “KFall,” which was developed from 32 Korean participants while wearing an inertial sensor on the low back and performing 21 types of activities of daily living and 15 types of simulated falls. In addition, ready-to-use temporal labels of the fall time based on synchronized motion videos were published along with the dataset. Those enhancements make KFall the first public dataset suitable for pre-impact fall detection, not just for post-fall detection. Importantly, we have also developed three different types of latest algorithms (threshold based, support-vector machine, and deep learning), using the KFall dataset for pre-impact fall detection so that researchers and practitioners can flexibly choose the corresponding algorithm. Deep learning algorithm achieved both high overall accuracy and balanced sensitivity (99.32%) and specificity (99.01%) for pre-impact fall detection. Support vector machine also demonstrated a good performance with a sensitivity of 99.77% and specificity of 94.87%. However, the threshold-based algorithm showed relatively poor results, especially the specificity (83.43%) was much lower than the sensitivity (95.50%). The performance of these algorithms could be regarded as a benchmark for further development of better algorithms with this new dataset. This large-scale motion dataset and benchmark algorithms could provide researchers and practitioners with valuable data and references to develop new technologies and strategies for pre-impact fall detection and proactive injury prevention for the elderly.

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Levenshtein Augmentation Improves Performance of SMILES Based Deep-Learning Synthesis Prediction

10.26434/chemrxiv.12562121 ◽

2020 ◽

Author(s):

Dean Sumner ◽

Jiazhen He ◽

Amol Thakkar ◽

Ola Engkvist ◽

Esben Jannik Bjerrum

Keyword(s):

Neural Networks ◽

Pattern Recognition ◽

Deep Learning ◽

Recurrent Neural Networks ◽

Data Augmentation ◽

State Of The Art ◽

Sequence Similarity ◽

Learning Models ◽

Underlying Network

SMILES randomization, a form of data augmentation, has previously been shown to increase the performance of deep learning models compared to non-augmented baselines. Here, we propose a novel data augmentation method we call “Levenshtein augmentation” which considers local SMILES sub-sequence similarity between reactants and their respective products when creating training pairs. The performance of Levenshtein augmentation was tested using two state of the art models - transformer and sequence-to-sequence based recurrent neural networks with attention. Levenshtein augmentation demonstrated an increase performance over non-augmented, and conventionally SMILES randomization augmented data when used for training of baseline models. Furthermore, Levenshtein augmentation seemingly results in what we define as attentional gain – an enhancement in the pattern recognition capabilities of the underlying network to molecular motifs.

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Improving the Accuracy of Protein-Ligand Binding Affinity Prediction by Deep Learning Models: Benchmark and Model

10.26434/chemrxiv.9866912 ◽

2019 ◽

Author(s):

Mohammad Rezaei ◽

Yanjun Li ◽

Xiaolin Li ◽

Chenglong Li

Keyword(s):

Deep Learning ◽

Drug Design ◽

Binding Affinity ◽

Benchmark Dataset ◽

Rational Drug Design ◽

Learning Models ◽

Structure Based Drug Design ◽

Binding Affinity Prediction ◽

Affinity Prediction ◽

Rational Drug

Introduction: The ability to discriminate among ligands binding to the same protein target in terms of their relative binding affinity lies at the heart of structure-based drug design. Any improvement in the accuracy and reliability of binding affinity prediction methods decreases the discrepancy between experimental and computational results. Objectives: The primary objectives were to find the most relevant features affecting binding affinity prediction, least use of manual feature engineering, and improving the reliability of binding affinity prediction using efficient deep learning models by tuning the model hyperparameters. Methods: The binding site of target proteins was represented as a grid box around their bound ligand. Both binary and distance-dependent occupancies were examined for how an atom affects its neighbor voxels in this grid. A combination of different features including ANOLEA, ligand elements, and Arpeggio atom types were used to represent the input. An efficient convolutional neural network (CNN) architecture, DeepAtom, was developed, trained and tested on the PDBbind v2016 dataset. Additionally an extended benchmark dataset was compiled to train and evaluate the models. Results: The best DeepAtom model showed an improved accuracy in the binding affinity prediction on PDBbind core subset (Pearson’s R=0.83) and is better than the recent state-of-the-art models in this field. In addition when the DeepAtom model was trained on our proposed benchmark dataset, it yields higher correlation compared to the baseline which confirms the value of our model. Conclusions: The promising results for the predicted binding affinities is expected to pave the way for embedding deep learning models in virtual screening and rational drug design fields.

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Data science in economics: comprehensive review of advanced machine learning and deep learning methods

10.31232/osf.io/4pxq2 ◽

2020 ◽

Author(s):

Saeed Nosratabadi ◽

Amir Mosavi ◽

Puhong Duan ◽

Pedram Ghamisi ◽

Ferdinand Filip ◽

...

Keyword(s):

Machine Learning ◽

Deep Learning ◽

Data Science ◽

State Of The Art ◽

Science Methods ◽

Learning Models ◽

Diverse Range ◽

Hybrid Machine ◽

Economics Research

This paper provides a state-of-the-art investigation of advances in data science in emerging economic applications. The analysis was performed on novel data science methods in four individual classes of deep learning models, hybrid deep learning models, hybrid machine learning, and ensemble models. Application domains include a wide and diverse range of economics research from the stock market, marketing, and e-commerce to corporate banking and cryptocurrency. Prisma method, a systematic literature review methodology, was used to ensure the quality of the survey. The findings reveal that the trends follow the advancement of hybrid models, which, based on the accuracy metric, outperform other learning algorithms. It is further expected that the trends will converge toward the advancements of sophisticated hybrid deep learning models.

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A Study on the Auxiliary Diagnosis of Thyroid Disease Images Based on Multiple Dimensional Deep Learning Algorithms

Current Medical Imaging Formerly Current Medical Imaging Reviews ◽

10.2174/1573405615666190115155223 ◽

2020 ◽

Vol 16 (3) ◽

pp. 199-205

Author(s):

Yuejun Liu ◽

Yifei Xu ◽

Xiangzheng Meng ◽

Xuguang Wang ◽

Tianxu Bai

Keyword(s):

Deep Learning ◽

Learning Algorithms ◽

Region Of Interest ◽

Classification Performance ◽

Thyroid Diseases ◽

Great Success ◽

Learning Models ◽

Good Classification Performance ◽

Spect Images

Background: Medical imaging plays an important role in the diagnosis of thyroid diseases. In the field of machine learning, multiple dimensional deep learning algorithms are widely used in image classification and recognition, and have achieved great success. Objective: The method based on multiple dimensional deep learning is employed for the auxiliary diagnosis of thyroid diseases based on SPECT images. The performances of different deep learning models are evaluated and compared. Methods: Thyroid SPECT images are collected with three types, they are hyperthyroidism, normal and hypothyroidism. In the pre-processing, the region of interest of thyroid is segmented and the amount of data sample is expanded. Four CNN models, including CNN, Inception, VGG16 and RNN, are used to evaluate deep learning methods. Results: Deep learning based methods have good classification performance, the accuracy is 92.9%-96.2%, AUC is 97.8%-99.6%. VGG16 model has the best performance, the accuracy is 96.2% and AUC is 99.6%. Especially, the VGG16 model with a changing learning rate works best. Conclusion: The standard CNN, Inception, VGG16, and RNN four deep learning models are efficient for the classification of thyroid diseases with SPECT images. The accuracy of the assisted diagnostic method based on deep learning is higher than that of other methods reported in the literature.

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Deep Learning in Disease Diagnosis: Models and Datasets

Current Bioinformatics ◽

10.2174/1574893615999201002124021 ◽

2020 ◽

Vol 15 ◽

Author(s):

Deeksha Saxena ◽

Mohammed Haris Siddiqui ◽

Rajnish Kumar

Keyword(s):

Biological Sciences ◽

Machine Learning ◽

Deep Learning ◽

Disease Diagnosis ◽

Learning Models ◽

Data Types ◽

Related Data ◽

Abstract Level ◽

Experimental Validations ◽

Selection Of

Background: Deep learning (DL) is an Artificial neural network-driven framework with multiple levels of representation for which non-linear modules combined in such a way that the levels of representation can be enhanced from lower to a much abstract level. Though DL is used widely in almost every field, it has largely brought a breakthrough in biological sciences as it is used in disease diagnosis and clinical trials. DL can be clubbed with machine learning, but at times both are used individually as well. DL seems to be a better platform than machine learning as the former does not require an intermediate feature extraction and works well with larger datasets. DL is one of the most discussed fields among the scientists and researchers these days for diagnosing and solving various biological problems. However, deep learning models need some improvisation and experimental validations to be more productive. Objective: To review the available DL models and datasets that are used in disease diagnosis. Methods: Available DL models and their applications in disease diagnosis were reviewed discussed and tabulated. Types of datasets and some of the popular disease related data sources for DL were highlighted. Results: We have analyzed the frequently used DL methods, data types and discussed some of the recent deep learning models used for solving different biological problems. Conclusion: The review presents useful insights about DL methods, data types, selection of DL models for the disease diagnosis.

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Deep Learning Model Comparison for Vision-Based Classification of Full/Empty-Load Trucks in Earthmoving Operations

Applied Sciences ◽

10.3390/app9224871 ◽

2019 ◽

Vol 9 (22) ◽

pp. 4871 ◽

Cited By ~ 4

Author(s):

Quan Liu ◽

Chen Feng ◽

Zida Song ◽

Joseph Louis ◽

Jian Zhou

Keyword(s):

Deep Learning ◽

Model Comparison ◽

Surveillance Systems ◽

Comparison Study ◽

Learning Models ◽

The Core ◽

Dump Trucks ◽

Deep Learning Model ◽

Contact Field

Earthmoving is an integral civil engineering operation of significance, and tracking its productivity requires the statistics of loads moved by dump trucks. Since current truck loads’ statistics methods are laborious, costly, and limited in application, this paper presents the framework of a novel, automated, non-contact field earthmoving quantity statistics (FEQS) for projects with large earthmoving demands that use uniform and uncovered trucks. The proposed FEQS framework utilizes field surveillance systems and adopts vision-based deep learning for full/empty-load truck classification as the core work. Since convolutional neural network (CNN) and its transfer learning (TL) forms are popular vision-based deep learning models and numerous in type, a comparison study is conducted to test the framework’s core work feasibility and evaluate the performance of different deep learning models in implementation. The comparison study involved 12 CNN or CNN-TL models in full/empty-load truck classification, and the results revealed that while several provided satisfactory performance, the VGG16-FineTune provided the optimal performance. This proved the core work feasibility of the proposed FEQS framework. Further discussion provides model choice suggestions that CNN-TL models are more feasible than CNN prototypes, and models that adopt different TL methods have advantages in either working accuracy or speed for different tasks.

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Deep Learning Models for Estimation of the SuperDARN Cross Polar Cap Potential

Earth and Space Science ◽

10.1029/2020ea001219 ◽

2020 ◽

Vol 7 (8) ◽

Author(s):

Erxiao Liu ◽

Hongqiao Hu ◽

Jianjun Liu ◽

Lei Qiao

Keyword(s):

Deep Learning ◽

Learning Models ◽

Polar Cap ◽

Cross Polar Cap Potential

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