New nickel (II), cobalt (III), and iron (III) complexes with N ′‐[(2‐aminochromon‐3‐yl)methylidene]benzohydrazide: Synthesis, characterization, solvatochromic shift, dipole moment, and DFT calculations

2022 ◽  
Author(s):  
Omima M. I. Adly ◽  
Ali Taha ◽  
Magdy A. Ibrahim
Keyword(s):  
Dipole Moment ◽  
Dft Calculations ◽  
Solvatochromic Shift

scholarly journals Investigation of Some Antiviral N-Heterocycles as COVID 19 Drug: Molecular Docking and DFT Calculations

2020 ◽  
Vol 21 (11) ◽  
pp. 3922 ◽  
Author(s):  
Mohamed Hagar ◽  
Hoda A. Ahmed ◽  
Ghadah Aljohani ◽  
Omaima A. Alhaddad
Keyword(s):  
Dipole Moment ◽  
Molecular Docking ◽  
Dft Calculations ◽  
Binding Affinity ◽  
Electrostatic Potential ◽  
Density Functional ◽  
Molecular Electrostatic Potential ◽  
Hydrophobic Interactions ◽  
Chemical Reactivity ◽  
Main Protease

The novel coronavirus, COVID-19, caused by SARS-CoV-2, is a global health pandemic that started in December 2019. The effective drug target among coronaviruses is the main protease Mpro, because of its essential role in processing the polyproteins that are translated from the viral RNA. In this study, the bioactivity of some selected heterocyclic drugs named Favipiravir (1), Amodiaquine (2), 2′-Fluoro-2′-deoxycytidine (3), and Ribavirin (4) was evaluated as inhibitors and nucleotide analogues for COVID-19 using computational modeling strategies. The density functional theory (DFT) calculations were performed to estimate the thermal parameters, dipole moment, polarizability, and molecular electrostatic potential of the present drugs; additionally, Mulliken atomic charges of the drugs as well as the chemical reactivity descriptors were investigated. The nominated drugs were docked on SARS-CoV-2 main protease (PDB: 6LU7) to evaluate the binding affinity of these drugs. Besides, the computations data of DFT the docking simulation studies was predicted that the Amodiaquine (2) has the least binding energy (−7.77 Kcal/mol) and might serve as a good inhibitor to SARS-CoV-2 comparable with the approved medicines, hydroxychloroquine, and remdesivir which have binding affinity −6.06 and −4.96 Kcal/mol, respectively. The high binding affinity of 2 was attributed to the presence of three hydrogen bonds along with different hydrophobic interactions between the drug and the critical amino acids residues of the receptor. Finally, the estimated molecular electrostatic potential results by DFT were used to illustrate the molecular docking findings. The DFT calculations showed that drug 2 has the highest of lying HOMO, electrophilicity index, basicity, and dipole moment. All these parameters could share with different extent to significantly affect the binding affinity of these drugs with the active protein sites.

Structural polymorphism of pyrazinium hydrogen sulfate: extending chemistry of the pyrazinium salts with small anions

2010 ◽  
Vol 66 (4) ◽  
pp. 451-457 ◽  
Author(s):  
Armand Budzianowski ◽  
Mariana Derzsi ◽  
Piotr J. Leszczyński ◽  
Michał K. Cyrański ◽  
Wojciech Grochala
Keyword(s):  
Density Functional Theory ◽  
Hydrogen Bond ◽  
Dipole Moment ◽  
Hydrogen Bonds ◽  
Dft Calculations ◽  
Density Functional ◽  
Hydrogen Sulfate ◽  
Structural Polymorphism ◽  
Functional Theory ◽  
First Time

Two polymorphs (α, β) of pyrazinium hydrogen sulfate (pyzH+HSO_4^-, abbreviated as PHS) with distinctly different hydrogen-bond types and topologies but close electronic energies have been synthesized and characterized for the first time. The α-polymorph (P212121) forms distinct blocks in which the pyzH+ and HSO_4^- ions are interconnected through a network of NH...O and OH...O hydrogen bonds. The β-form (P\bar 1) consists of infinite chains of alternating pyzH+ and HSO_4^- ions connected by NH...O and OH...N hydrogen bonds. Density functional theory (DFT) calculations indicate the possible existence of a hypothetical polar P1 form of the β-polymorph with an unusually high dipole moment.

DFT STUDY OF METHYL (CH3) AND HYDROXYL (OH) ADSORPTION ON A GOLD (001) SURFACE

2019 ◽  
Vol 26 (05) ◽  
pp. 1850198 ◽  
Author(s):  
G. B. BOUKA-PIVOTEAU ◽  
M. N’DOLLO ◽  
B. R. MALONDA-BOUNGOU ◽  
B. MALOUMBI ◽  
P. S. MOUSSOUNDA ◽  
...  
Keyword(s):  
Dipole Moment ◽  
Surface Energy ◽  
Dft Calculations ◽  
Adsorption Energy ◽  
Energy Surface ◽  
Geometrical Parameters ◽  
Oh Radical ◽  
Spin Polarized ◽  
Surface Dipole ◽  
Adsorption Energies

We used the DACAPO code with the GGA-PW91 approximation to study the adsorption of methyl (CH3) and hydroxyl (OH) for four- and five-layer gold (Au) (001) slabs. We have determined for each species the best binding site, adsorption energy, the change in the work function, surface energy, surface dipole moment, geometrical parameters and projected density of states (PDOS). We performed spin-unpolarized and spin-polarized DFT calculations for free and adsorbed CH3 and OH species. The most important point is that the spin polarization diminishes the adsorption energies but does not change the geometrical parameters. For the CH3 species, only the top site was found to be stable for different coverages. We found that during the optimization phase, the hollow and bridge sites were found to be unstable. In both cases the CH3 species moves toward the top site. We observe that the adsorption energy decreases when increasing the coverage. However, the OH species was stable in all investigated sites (top, bridge and hollow). We notice that the adsorption energy is dependent on the number of slab layers and the bridge is the best site in adsorption energy. The analysis of the calculated O PDOS of OH radical shows a mixing between the O orbitals and the Au bands.

Optical limiting and singlet oxygen generation properties of phosphorus triazatetrabenzcorroles

2015 ◽  
Vol 19 (01-03) ◽  
pp. 192-204 ◽  
Author(s):  
Colin Mkhize ◽  
Jonathan Britton ◽  
John Mack ◽  
Tebello Nyokong
Keyword(s):  
Optical Properties ◽  
Dipole Moment ◽  
Dft Calculations ◽  
Singlet Oxygen ◽  
Electronic Structures ◽  
Optical Limiting ◽  
Oxygen Generation ◽  
Singlet Oxygen Generation ◽  
Td Dft ◽  
Benzene Rings

Novel phosphorus triazatetrabenzcorrole (TBC) tetrasubstituted at the α- and β-positions of the peripheral fused benzene rings with t-butylphenoxy substituents have been prepared and characterized. The effect of the substituents on the electronic structures and optical properties is investigated with TD-DFT calculations and MCD spectroscopy. The optical limiting properties have been investigated to examine whether the lower symmetry that results from the direct pyrrole–pyrrole bond and hence the permanent dipole moment that is introduced result in higher safety thresholds, relative to the values that have been reported for phthalocyanines. The suitability of the compounds for singlet oxygen applications has also been examined.

Solvatochromic shift and estimation of dipole moment of synthesized coumarin derivative: Application as sensor for fluorogenic recognition of Fe3+ and Cu2+ ions in aqueous solution

2016 ◽  
Vol 222 ◽  
pp. 253-262 ◽  
Author(s):  
Sunita Joshi ◽  
Santosh Kumari ◽  
Amrit Sarmah ◽  
Rajeev Sakhuja ◽  
Debi D. Pant
Keyword(s):  
Aqueous Solution ◽  
Dipole Moment ◽  
Coumarin Derivative ◽  
Solvatochromic Shift

Time-dependent DFT calculations of the dipole moment and polarizability for excited states

2021 ◽  
pp. 305-327
Author(s):  
Tadeusz Pluta ◽  
Grzegorz Skrzyński
Keyword(s):  
Dipole Moment ◽  
Dft Calculations ◽  
Excited States ◽  
Time Dependent

scholarly journals Exploring novel fluorine rich fuberidazole derivatives as hypoxic cancer inhibitors: design, synthesis, pharmacokinetics, molecular docking and DFT evaluations

2022 ◽  
Author(s):  
Muhammad Babar Taj ◽  
Omar Makarm Ali
Keyword(s):  
Dna Damage ◽  
Dipole Moment ◽  
Molecular Docking ◽  
Human Serum Albumin ◽  
Dft Calculations ◽  
Cancer Cells ◽  
Design Synthesis ◽  
Structure Activity ◽  
In Silico Studies

Sixteen fuberidazole derivatives as potential new anticancer bioreductive prodrugs are prepared and characterized. The in vitro anticancer potential is examined to explore their cytotoxic properties employing apoptosis, DNA damage, and proliferation tests on chosen hypoxic cancer cells. Overall, eight substances (Compound 5a, 5c, 5d, 5e, 5g, 5h, 5i, and 5m) showed good cytotoxic properties. The potential of compounds is also examined through in silico studies (against human serum albumin), including chem-informatics to understand the structure-activity relationship (SAR), pharmacochemical strength, and the mode of interactions responsible for their action. The DFT calculations revealed that only 5b compound showed the lowest ΔET (2.29 eV) while  5i showed relatively highest βtot (69.89 x 10-31 esu), highest αave (3.18 x 10-23 esu), and dipole moment (6.49 Debye). This study presents a novel class of fuberidazole derivatives with selectivity toward hypoxic cancer cells.

Determination of excited state electric dipole moment of the isomeric fluorophenylisocyanates from solvatochromic shift measurements

Pramana ◽  
1988 ◽  
Vol 30 (3) ◽  
pp. 211-215
Author(s):  
N H Ayachit ◽  
A M Huralikoppi ◽  
K Suryanarayana Rao ◽  
M A Shashidhar
Keyword(s):  
Dipole Moment ◽  
Excited State ◽  
Electric Dipole Moment ◽  
Electric Dipole ◽  
Solvatochromic Shift
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