scholarly journals Velocity-amplified microbial respiration rates in the lower Amazon River

2018 ◽  
Vol 3 (3) ◽  
pp. 265-274 ◽  
Author(s):  
Nicholas D. Ward ◽  
Henrique O. Sawakuchi ◽  
Vania Neu ◽  
Diani F. S. Less ◽  
Aline M. Valerio ◽  
...  
2020 ◽  
Author(s):  
Christian Ranits ◽  
Lucia Fuchslueger ◽  
Leandro Van Langenhove ◽  
Ivan Janssens ◽  
Josep Peñuelas ◽  
...  

<p>Tropical forest ecosystems are important components of global biogeochemical cycling. Many tropical rainforests grow in old and highly weathered soils, depleted in phosphorus (P) and net primary productivity in tropical forests is often limited by P availability. It is unclear, however, if heterotrophic microbial communities in tropical soils are also limited by P or rather by carbon (C). Elemental limitations of microorganisms in soil have often been approached by measurements of respiration rates in response to additions of nutrients or carbon. However, it has been argued lately, that microbial growth rather than respiration should be used to assess limitations.</p><p>In this study we therefore ask the question whether the growth of heterotrophic microbial communities in tropical soil is limited by available phosphorus or by carbon. We collected soils from three sites along a topographic gradient (plateau, slope, bottom) differing in soil texture, total and available P concentrations from a well-studied, P-poor region in Nouragues, French Guiana. We incubated these soils in the laboratory with C in the form of cellulose, inorganic phosphorus and with a combination of both, and studied microbial growth by measuring the <sup>18</sup>O incorporation from labelled water into microbial DNA. Moreover, we measured microbial respiration and determined microbial biomass C, N (nitrogen) and P.</p><p>Our results demonstrate that, although microbial biomass C and N was similar in soil collected from all three topographic sites, soil respiration rates were significantly higher in soils from the plateau indicating a more active microbial community. Microbial C and N did not respond to cellulose and inorganic P additions, only microbial P increased significantly when P was added in all soils. Although microbial biomass C was not increased, C and P additions stimulated microbial respiration in clay rich plateau soils. In slope soils microbial communities initially only increased respiration activity in response to P additions, however at the end of the incubation also C showed significant differences in respiration activity, with strongest increases when C and P were added in combination. In sandier bottom soils microorganisms responded with increased activity to C addition, but also here respiration showed strongest increases in response to combined carbon and phosphorus additions. We will discuss these findings in relation to the pattern of gross growth rates in these soils and evaluate the stoichiometric limitations of microbial activity and turnover.</p>


1983 ◽  
Vol 13 (5) ◽  
pp. 795-817 ◽  
Author(s):  
P. W. Flanagan ◽  
K. Van Cleve

A variety of evergreen and deciduous forests in the taiga of interior Alaska were studied over a 5-year period to examine how the chemical quality of forest-floor organic matter affected its rate of decomposition and mineral cycling within and outside the tree vegetation. Litterbag and respiration studies were used to monitor decomposition. Natural forest-floor substrates and others altered by addition of N, P, and K fertilizer and glucose as a carbon source were studied in the laboratory and field for rates of weight loss and O2 consumption. Forest floors differing in C/N ratios, including those deficient in N, were used to measure substrate quality influences on seedling growth, nutrient content, and tannin content. Microbial (bacteria and fungi) biomass was measured across a range of forest types along with pH, base saturation total pool sizes of N and P, and annual mineralization of organic matter per square metre. Under identical moisture and temperature conditions average respiration rates in evergreen forest-floor L, F, and H substrates were 1.8, 2.8, and 2.0 times less than in the corresponding deciduous forest horizons, respectively. Birch L and F horizons had respiration rates 11.5 times higher than the corresponding black spruce layers. Weight losses in birch L, F, and H horizons were 6, 3, and 2 times higher, respectively, than in the corresponding black spruce substrates. Substrates had a quality-dependent decay rate which did not change when they were relocated within or between sites indicating that measured field climatic differences were not as influential on decay rates as substrate quality components. Fungal biomass was significantly correlated with the quantity of organic matter in all sites (n = 15, r = 0.62) but correlations were better for deciduous (n = 9, r = 0.89), and evergreen (n = 6, r = 0.82) forests separately. Strong correlations exist also between grams of organic matter decayed per square metre per year and fungal biomass (n = 13, r = 0.86), and fungal biomass and grams of N and P mineralized per square metre per year (n = 14, r = 0.95) and (n = 11, r = 0.94, respectively). Seedlings on mineral-deficient substrates produced more tannins than the controls, and seedlings on substrates with widening C/N ratios had successively less tissue with lower N content, and proportionally more roots. Nitrogen content of litter fall in increasingly nitrogen-poor forest floors was correspondingly lower. Nitrogen content of litter fall on N rich forest floors and N fertilized forest floors was proportionately higher. Nitrogen withdrawal in leaves at senescence was inversely correlated with grams N mineralized per square metre per year in forest floors. Fertilization did not influence microbial processes in the field, though lab studies indicated a negative influence of NH4, P, and K on microbial respiration. Glucose added in the laboratory and field markedly increased forest-floor microbial respiration. In vitro glucose-induced increases in respiration were not influenced by addition of ammonium nitrate and were significantly depressed by addition of P and K. In the field, fertilization had no effect on either glucose-induced respiration or microbial biomass.


2019 ◽  
Vol 20 (3) ◽  
pp. 782 ◽  
Author(s):  
Josué Villegas-Mendoza ◽  
Ramón Cajal-Medrano ◽  
Helmut Maske

In the ocean, the prokaryote respiration rates dominate the oxidation of organics, but the measurements may be biased due to pre-incubation size filtration and long incubation times. To overcome these difficulties, proxies for microbial respiration rates have been proposed, such as the in vitro and in vivo estimation of electron transport system rates (ETS) based on the reduction of tetrazolium salts. INT (2-(4-Iodophenyl)-3-(4-Nitrophenyl)-5-(Phenyl) Tetrazolium Chloride) is the most commonly applied tetrazolium salt, although it is toxic on time scales of less than 1 h for prokaryotes. This toxicity invalidates the interpretation of the rate of in vivo INT reduction to formazan as a proxy for oxygen consumption rates. We found that with aquatic bacteria, the amount of reduced INT (F; µmol/L formazan) showed excellent relation with the respiration rates prior to INT addition (R; O2 µmol/L/hr), using samples of natural marine microbial communities and cultures of bacteria (V. harveyi) in batch and continuous cultures. We are here relating a physiological rate with the reductive potential of the poisoned cell with units of concentration. The respiration rate in cultures is well related to the cellular potential of microbial cells to reduce INT, despite the state of intoxication.


2020 ◽  
Vol 34 (6) ◽  
Author(s):  
Jian‐Sheng Ye ◽  
Mark A. Bradford ◽  
Fernando T. Maestre ◽  
Feng‐Min Li ◽  
Pablo García‐Palacios

2014 ◽  
Vol 44 (8) ◽  
pp. 986-993 ◽  
Author(s):  
Jason G. Vogel ◽  
Dustin Bronson ◽  
Stith T. Gower ◽  
Edward A.G. Schuur

We investigated the effects of a 5 °C soil + air experimental heating on root and microbial respiration in a boreal black spruce (Picea mariana (Mill.) B.S.P.) forest in northern Manitoba, Canada, that was warmed between 2004 and 2007. In 2007, the 14C/12C signatures of soil CO2 efflux and root and soil microbial respiration were used in a two-pool mixing model to estimate their proportional contributions to soil CO2 efflux and to examine how each changed in response to the warming treatments. In laboratory incubations, we examined whether warming had altered microbial respiration rates or microbial temperature sensitivity. The 14C/12C signature of soil CO2 efflux and microbial respiration in the heating treatments were both significantly (p < 0.05) enriched relative to the control treatment, suggesting that C deposited nearer the atmospheric bomb peak in 1963 contributed more to microbial respiration in heated than control treatments. Soil CO2 efflux was significantly greater in the heated than control treatments, suggesting the acclimation to temperature of either root or microbial respiration was not occurring in 2007. Microbial respiration in laboratory incubations was similar in heated and control soils. This study shows that microbial respiration rates still responded to temperature even after 4 years of warming, highlighting that ecosystem warming can cause a prolonged release of soil organic matter from these soils.


1980 ◽  
Vol 60 (4) ◽  
pp. 675-684 ◽  
Author(s):  
N. W. FOSTER ◽  
E. G. BEAUCHAMP ◽  
C. T. CORKE

The influence of soil moisture on urea hydrolysis and microbial respiration in mixed L and F horizons of a Brunisolic soil under a boreal forest jack pine (Pinus banksiana Lamb.) stand was determined in an incubation study at 13 °C. Respiration rates in untreated soil were similar over a wide range of moisture contents below 300% (45% water-holding capacity). Significant decreases in respiration rates occurred only below 60% moisture content. Initial microbial response to urea increased as soil moisture rose from 20 to 300%. There was sufficient urease in pine humus to hydrolyze rapidly the equivalent of 200 kg urea-N∙ha−1, when moisture was not limiting. During the drying of initially moist soil (340% H2O) to 240% H2O or lower, urea hydrolysis was retarded significantly and microbial respiration reduced by an average of 25% over that observed in a constantly moist soil.


1992 ◽  
Vol 49 (1) ◽  
pp. 17-22 ◽  
Author(s):  
Brenda M. Miskimmin ◽  
John W. M. Rudd ◽  
Carol A. Kelly

Effects of changes in DOC concentrations, pH, and microbial respiration rates on specific rates of mercury methylation and demethylation in lake water were studied using radioisotopic techniques. Increased concentrations of DOC resulted in decreased specific rates of net methylation, possibly as a result of complexation of inorganic mercury with DOC. A reduction in pH from 7.0 to 5.0 had the greatest effect, causing large to moderate increases in net methylation rate at both low and high DOC concentrations (500–2600 μM). Rates of respiration (indicative of general rates of microbial activity), which were insensitive to pH change over the range tested (5.0–7.0), had the smallest effect on net methyl mercury production rates. We propose the following explanations for three situations in which high mercury concentrations are commonly found in fish. (1) in acidified dilute clear-water lakes, high fish mercury concentrations may be a result of enhanced in-lake methylation; (2) in brown-water circumneutral lakes, where in-lake methylation is inhibited by high DOC concentrations, terrestrial inputs of methyl mercury may be most important; and (3) in brown-water, low-pH lakes, both in-lake and terrestrial sources of methyl mercury may contribute to elevated mercury concentrations in fish.


2020 ◽  
Author(s):  
Katrin Attermeyer ◽  
Astrid Harjung ◽  
Jakob Schelker ◽  
Martin Kainz ◽  
Gabriele Weigelhofer

&lt;p&gt;The stream hyporheic zone (HZ) represents the interface between streams and groundwater. Due to the mixing of organic matter and nutrients from groundwater and surface waters it is a hot spot of microbial activities and carbon processing within a stream network. The magnitude of terrestrial carbon degradation by microorganisms in the HZ influences the quantity and biochemical quality of terrestrial carbon as well as greenhouse gas concentrations in streams. One of the factors controlling microbial activities and terrestrial carbon degradation in the HZ are nutrients. However, major knowledge gaps exist regarding the control of nutrients on terrestrial carbon processing in the HZ among different streams.&lt;/p&gt;&lt;p&gt;We investigated the role of algal DOM (DOM&lt;sub&gt;alg&lt;/sub&gt;) and phosphorus (P) on the degradation of soil DOM (DOM&lt;sub&gt;soil&lt;/sub&gt;) by hyporheic microorganisms in a lab- and a field-based experiment. In the lab-based experiment, we focused on the influence of different DOM&lt;sub&gt;soil&lt;/sub&gt;:DOM&lt;sub&gt;alg&lt;/sub&gt; ratios on the DOM degradation at similar carbon concentrations in microcosms mimicking the HZ. One batch was incubated at ambient P concentrations and a second batch at increased P concentrations adapted to the highest levels found in the pure DOM&lt;sub&gt;alg&lt;/sub&gt;. We assessed microbial respiration and changes in DOM optical properties to examine quantitative and qualitative changes of the DOM pool. In the field-based experiment, we determined microbial respiration rates of HZ-sediments from 20 streams in Austria with differing ambient nutrient and organic carbon concentrations. The sediments were incubated with DOM&lt;sub&gt;soil&lt;/sub&gt;, with and without additional P.&lt;/p&gt;&lt;p&gt;Results from the lab-based experiment show that microbial respiration in the HZ decreased with increasing soil DOM fractions. When P levels were adapted to DOM&lt;sub&gt;alg&lt;/sub&gt; concentrations, microbial respiration rates were comparable between the different DOM mixtures and DOM&lt;sub&gt;soil&lt;/sub&gt; was degraded. However, in the field-based experiment, P addition only stimulated microbial respiration rates in one out of 20 HZ-sediments, suggesting that microbial respiration rates are not solely controlled by P.&lt;/p&gt;&lt;p&gt;In conclusion, nutrient pulses can stimulate microbial activities and thus terrestrial carbon degradation in the HZ. However, when using different stream HZ-sediments, it becomes evident that the nutrient stimulation is not a ubiquitous mechanism and terrestrial carbon degradation in the HZ is controlled by a multitude of factors.&lt;/p&gt;


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