Patchy Distributions and Distinct Niche Partitioning of Mycoplankton Populations across a Nearshore to Open Ocean Gradient

Fungi are an important, but understudied, group of heterotrophic microbes in marine environments. Traditionally, fungi in the coastal ocean were largely assumed to be derived from terrestrial inputs.

Origin of the Multiple-Sourced Cherts in Maokou Carbonates in Sichuan Basin, South China

Cherts have been thought to originate from biosilicification, terrestrial inputs and hydrothermal activity. The study of cherts is helpful in understanding the paleo-ocean environment and tectonic–sedimentary processes. Large amounts of cherts occur widely in the Maokou Formation in the Sichuan Basin, which may be largely connected to the Permian Chert Event (PCE). However, the source of silica and the formation process of cherts remain debated. Here, we analyze the petrographic and geochemical features of the cherts from the Guadalupian Maokou Formation (~268–259 Ma) in six sections in the Sichuan Basin. Two main types of cherts, nodular and bedded, are recognized in the Maokou Formation. The formation of nodular cherts was mainly affected by hydrothermal fluids, whereas the bedded cherts are mainly of biogenetic origin. The Emeishan large igneous province (ELIP) caused the activation of deep faults, accompanied by intense hydrothermal activities. Correspondingly, the cherts of significant hydrothermal origin developed near the active deep faults. The intensified hydrothermal activities may provide extra silica supplies and flourish the silica-secreting organisms by the associated volcanogenic upwellings that facilitated the enrichment of cherts. The study of Maokou cherts can help to record the volcanic- and silicon-related biological activities in the eastern Paleo-Tethys Ocean and can provide significant implications for chert enrichment in analogous settings.

Partitioning Inorganic Carbon Fluxes from Paired O2 - CO2 Gas Measurements in a Neotropical Headwater Stream, Costa Rica

The role of rivers and streams in the global carbon (C) cycle remains unconstrained, especially in headwater streams where CO2 evasion (FCO2) to the atmosphere is high. Stream C cycling is understudied in the tropics compared to temperate streams, and tropical streams may have among the highest FCO2 due to higher temperatures, continuous organic matter inputs, and high respiration rates both in-stream and in surrounding soils. In this paper, we present paired in-stream O2 and CO2 sensor data from a headwater stream in a lowland rainforest in Costa Rica to explore temporal variability in ecosystem processes. Further, we estimate groundwater CO2 inputs (GWCO2) from riparian well CO2 measurements and assess all fluxes to examine the relative contributions of sinks and sources of dissolved inorganic C (DIC) to a headwater stream. Paired O2 - CO2 data reveal stream CO2 supersaturation driven by groundwater CO2 inputs and large in-stream production of CO2. Areal fluxes in our study reach show FCO2 is supported by both GWCO2 inputs and in-stream metabolism and the seasonality in GWCO2 reflects the hydrology of the site. Using a mass balance approach, we show FCO2 is the dominant loss of DIC from the stream, greater than dissolved exports, and is sustained by both internal production of DIC and terrestrial inputs of DIC. Our results underscore the importance of tropical headwater streams as large contributors of greenhouse gases to the atmosphere among inland waters and show of this C derives from both in-stream and terrestrial sources.

Phosphorous fractionation distribution in surface sediments of the Jobokuto Bay

Phosphorus (P) is an essential nutrient that can limit primary productivity in waters. Phosphorus has significant impact on the biogeochemical cycle in marine ecosystems. Surface sediments play an important role in the nutrient dynamics. Riverine input is sources of P to the ocean and sediment plays an important role as a source or sink of P in the coloumn of water. Phosphorous (P) availability is regarded as the most important factor for determining the water quality in coastal waters. However, not all of the P fractions can be released from the sediment. This study was conducted to identify the distribution of phosphorus (P) fractionation in the sediment surface of Jobokuto Bay. Samples were collected from ten locations. Percentage of sedimentary parameters such as sand, silt, clay, and organic carbon were analyzed to find out their relation with various P fractions. The sediment found was mostly sand at the station near to the coast and mud (silt and clay) at offshore stations. The results showed that Ca-P dominant (56.03%) and percentages of Fe-P, OP, and Ads-P were 23.43, 17.41, and 3.2% respectively. Terrestrial inputs and biological deposits cause Ca-P dominant. The bioavailability of P fractions were ranged from 34.45 to 56.1% of the total P (TP) content. The high concentrations of the Ads-P was found in the mud fraction and located at offshore stations. The order of abundance of the major forms of P in the surface sediments of Jobokuto bay is as follows: Ca-P > Fe-P > OP > Ads-P

Linking Microbial Functioning and Trophic Pathways to Ecological Status in a Coastal Mediterranean Ecosystem

Coastal marine ecosystems host complex microbial communities whose composition and metabolism are influenced by continental inputs and mesoscale properties of seawater masses. The identifying traits of the phytoplankton and bacteria such as biomass, size, shape and their metabolism related to organic matter production and degradation, recognized as indicators of the functioning of an ecosystem, were observed in the Gulf of Manfredonia (South Adriatic Sea, Italy) in late spring. This Gulf area is characterized by terrestrial inputs and mesoscale circulation influence such as coastal waters flowing southward from the North Adriatic and offshore waters interested by the Ionian Sea. Water samples were grouped in clusters (Coastal, Intermediate, Offshore and Deep Systems) according to the water column properties. Phytoplankton community biomass and composition, autotrophic and total prokaryotic abundances and microbial metabolism such as enzyme activity rates and prokaryotic heterotrophic production were analyzed to elucidate the trophic pathways with the objective to infer on the ecosystem status. As expected, size-fractionated phytoplankton biomass and production showed greater concentration in coastal waters with prevalence of the largest fractions (micro- and nano-) supported by the diatoms. Conversely, lower biomass and production were measured in all off-shore waters, mainly sustained by smallest fractions (nano-sized phytoflagellates and picophytoplankton). Total and autotrophic prokaryotic abundance decreased from coastal to offshore stations, inversely with respect to cell volume. Prokaryotic heterotrophic production was just below 50% compared to that of phytoplankton in all waters, evidencing an active biomass synthesis. High alkaline phosphatase and leucine aminopeptidase in coastal and offshore waters suggested the quick regeneration of Phosphorus and protein decomposition, respectively. Different levels of phytoplankton-bacteria association might provide a tool to define the ecological status of the studied system in the observed period; an approach to ecosystem assessment exportable to other coastal systems is proposed.

Terrestrial Inputs Shape Coastal Bacterial and Archaeal Communities in a High Arctic Fjord (Isfjorden, Svalbard)

The Arctic is experiencing dramatic changes including increases in precipitation, glacial melt, and permafrost thaw, resulting in increasing freshwater runoff to coastal waters. During the melt season, terrestrial runoff delivers carbon- and nutrient-rich freshwater to Arctic coastal waters, with unknown consequences for the microbial communities that play a key role in determining the cycling and fate of terrestrial matter at the land-ocean interface. To determine the impacts of runoff on coastal microbial (bacteria and archaea) communities, we investigated changes in pelagic microbial community structure between the early (June) and late (August) melt season in 2018 in the Isfjorden system (Svalbard). Amplicon sequences of the 16S rRNA gene were generated from water column, river and sediment samples collected in Isfjorden along fjord transects from shallow river estuaries and glacier fronts to the outer fjord. Community shifts were investigated in relation to environmental gradients, and compared to river and marine sediment microbial communities. We identified strong temporal and spatial reorganizations in the structure and composition of microbial communities during the summer months in relation to environmental conditions. Microbial diversity patterns highlighted a reorganization from rich communities in June toward more even and less rich communities in August. In June, waters enriched in dissolved organic carbon (DOC) provided a niche for copiotrophic taxa including Sulfitobacter and Octadecabacter. In August, lower DOC concentrations and Atlantic water inflow coincided with a shift toward more cosmopolitan taxa usually associated with summer stratified periods (e.g., SAR11 Clade Ia), and prevalent oligotrophic marine clades (OM60, SAR92). Higher riverine inputs of dissolved inorganic nutrients and suspended particulate matter also contributed to spatial reorganizations of communities in August. Sentinel taxa of this late summer fjord environment included taxa from the class Verrucomicrobiae (Roseibacillus, Luteolibacter), potentially indicative of a higher fraction of particle-attached bacteria. This study highlights the ecological relevance of terrestrial runoff for Arctic coastal microbial communities and how its impacts on biogeochemical conditions may make these communities susceptible to climate change.

Comparison of the U₃₇^{K^′}, LDI, TEX₈₆^H, and RI-OH temperature proxies in sediments from the northern shelf of the South China Sea

The temperature proxies U37K′, LDI, TEX86H, and RI-OH are derived from lipid biomarkers, namely long-chain alkenones from coccolithophorids and long-chain diols ascribed tentatively to eustigmatophytes, as well as glycerol dialkyl glycerol tetraethers (GDGTs) and OH-GDGTs produced by Archaea. The applicability of these proxies in the South China Sea (SCS) has been investigated previously. However, in each study only one or two of the proxies were compared, and the recently updated calibrations or new calibrating methods such as BAYSPAR and BAYSPLINE were not applied. Here, we investigate four proxies in parallel in a set of surface sediment samples from the northern SCS shelf and relate them to local sea surface temperature (SST), which allows for us to compare and assess similarities and differences between them and also help improve regional multiproxy seawater temperature reconstructions. Our results indicate that U37K′ reflects annual mean SST with a slight bias toward the warm season. Terrestrial inputs appear to have a significant impact on LDI, TEX86H, and RI-OH proxies near the coast, leading to colder LDI- and TEX86H-derived temperatures but a warmer RI-OH temperature estimate. After excluding samples influenced by terrestrial materials, we find that LDI-derived temperature agrees well with annual SST, while TEX86H- and RI-OH-derived temperature estimates are close to SSTs in seasons dominated by the East Asian winter monsoon and summer monsoon, respectively. The different seasonal biases of these temperature proxies provide valuable tools to reconstruct regional SSTs under different monsoonal conditions.