Chromosomal, in silico and in vitro Expression Analysis of Cardiovascular-based Genes Encoding Zinc Finger Proteins

1999 ◽  
Vol 31 (9) ◽  
pp. 1749-1769 ◽  
Author(s):  
Ken-Shwo Dai ◽  
Choong-Chin Liew
2017 ◽  
Vol 17 (6) ◽  
pp. 653-666 ◽  
Author(s):  
Wenlan Li ◽  
Jingchao Wang ◽  
Qi Sun ◽  
Wencai Li ◽  
Yanli Yu ◽  
...  

Author(s):  
Elahe Akbari ◽  
Kimia Kardani ◽  
Ali Namvar ◽  
Soheila Ajdary ◽  
Esmat Mirabzadeh Ardakani ◽  
...  

1999 ◽  
Vol 19 (6) ◽  
pp. 4366-4378 ◽  
Author(s):  
Robert F. Ryan ◽  
David C. Schultz ◽  
Kasirajan Ayyanathan ◽  
Prim B. Singh ◽  
Josh R. Friedman ◽  
...  

ABSTRACT Krüppel-associated box (KRAB) domains are present in approximately one-third of all human zinc finger proteins (ZFPs) and are potent transcriptional repression modules. We have previously cloned a corepressor for the KRAB domain, KAP-1, which is required for KRAB-mediated repression in vivo. To characterize the repression mechanism utilized by KAP-1, we have analyzed the ability of KAP-1 to interact with murine (M31 and M32) and human (HP1α and HP1γ) homologues of the HP1 protein family, a class of nonhistone heterochromatin-associated proteins with a well-established epigenetic gene silencing function in Drosophila. In vitro studies confirmed that KAP-1 is capable of directly interacting with M31 and hHP1α, which are normally found in centromeric heterochromatin, as well as M32 and hHP1γ, both of which are found in euchromatin. Mapping of the region in KAP-1 required for HP1 interaction showed that amino acid substitutions which abolish HP1 binding in vitro reduce KAP-1 mediated repression in vivo. We observed colocalization of KAP-1 with M31 and M32 in interphase nuclei, lending support to the biochemical evidence that M31 and M32 directly interact with KAP-1. The colocalization of KAP-1 with M31 is sometimes found in subnuclear territories of potential pericentromeric heterochromatin, whereas colocalization of KAP-1 and M32 occurs in punctate euchromatic domains throughout the nucleus. This work suggests a mechanism for the recruitment of HP1-like gene products by the KRAB-ZFP–KAP-1 complex to specific loci within the genome through formation of heterochromatin-like complexes that silence gene activity. We speculate that gene-specific repression may be a consequence of the formation of such complexes, ultimately leading to silenced genes in newly formed heterochromatic chromosomal environments.


2017 ◽  
Vol 118 (04) ◽  
pp. 189-195 ◽  
Author(s):  
S. Hekmat ◽  
S. D. Siadat ◽  
M. R. Aghasadeghi ◽  
S. M. Sadat ◽  
G. Bahramali ◽  
...  

2015 ◽  
Vol 108 (2) ◽  
pp. 519a
Author(s):  
Ryan Godwin ◽  
William Gmeiner ◽  
Freddie Salsbury

1994 ◽  
Vol 22 (2) ◽  
pp. 158-166 ◽  
Author(s):  
Paul Schnitzler ◽  
Michael Hug ◽  
Michaela Handermann ◽  
Waltraud Janssen ◽  
Eugene V. Koonin ◽  
...  

2019 ◽  
Vol 20 (22) ◽  
pp. 5611
Author(s):  
Wajeeha Jamil ◽  
Wei Wu ◽  
Hui Gong ◽  
Jing-Wen Huang ◽  
Mudassar Ahmad ◽  
...  

Hypoxic environments are generally undesirable for most plants, but for astringent persimmon, high CO2 treatment (CO2 > 90%), also termed artificial high-CO2 atmosphere (AHCA), causes acetaldehyde accumulation and precipitation of soluble tannins and could remove astringency. The multiple transcriptional regulatory linkages involved in persimmon fruit deastringency have been advanced significantly by characterizing the ethylene response factors (ERFs), WRKY and MYB; however, the involvement of zinc finger proteins for deastringency has not been investigated. In this study, five genes encoding C2H2-type zinc finger proteins were isolated and designed as DkZF1-5. Phylogenetic and sequence analyses suggested the five DkZFs could be clustered into two different subgroups. qPCR analysis indicated that transcript abundances of DkZF1/4 were significantly upregulated during AHCA treatment (1% O2 and 95% CO2) at day 1, DkZF2/5 at both day 1 and 2, while DkZF3 at day 2. Dual-luciferase assay indicated DkZF1 and DkZF2 as the activators of deastringency-related structural genes (DkPDC2 and DkADH1) and transcription factors (DkERF9/10). Moreover, combinative effects between various transcription factors were investigated, indicating that DkZF1 and DkZF2 synergistically showed significantly stronger activations on the DkPDC2 promoter. Further, both bimolecular fluorescence complementation (BiFC) and yeast two hybrid (Y2H) assays confirmed that DkZF2 had protein–protein interactions with DkZF1. Thus, these findings illustrate the regulatory mechanisms of zinc finger proteins for persimmon fruit deastringency under AHCA.


Genomics ◽  
1997 ◽  
Vol 43 (2) ◽  
pp. 191-201 ◽  
Author(s):  
Pauline L. Lee ◽  
Terri Gelbart ◽  
Carol West ◽  
Michele Adams ◽  
Ryan Blackstone ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document