BONCAT: Metabolic Labeling, Click Chemistry, and Affinity Purification of Newly Synthesized Proteomes

Author(s):  
Peter Landgraf ◽  
Elmer R. Antileo ◽  
Erin M. Schuman ◽  
Daniela C. Dieterich
Molecules ◽  
2021 ◽  
Vol 26 (1) ◽  
pp. 243
Author(s):  
Vivian S. Lin

Continued expansion of the chemical biology toolbox presents many new and diverse opportunities to interrogate the fundamental molecular mechanisms driving complex plant–microbe interactions. This review will examine metabolic labeling with click chemistry reagents and activity-based probes for investigating the impacts of plant-associated microbes on plant growth, metabolism, and immune responses. While the majority of the studies reviewed here used chemical biology approaches to examine the effects of pathogens on plants, chemical biology will also be invaluable in future efforts to investigate mutualistic associations between beneficial microbes and their plant hosts.


Author(s):  
Hao Jiang ◽  
Lei Feng ◽  
David Soriano del Amo ◽  
Ronald D. Seidel III ◽  
Florence Marlow ◽  
...  

2021 ◽  
pp. 315-322
Author(s):  
Jerrard M. Hayes ◽  
Darren M. O’Hara ◽  
Gavin P. Davey

Blood ◽  
1998 ◽  
Vol 92 (9) ◽  
pp. 3042-3049 ◽  
Author(s):  
Luis M. Martins ◽  
Timothy J. Kottke ◽  
Scott H. Kaufmann ◽  
William C. Earnshaw

Abstract Treatment of HL-60 human leukemia cells with etoposide induces apoptotic cell death and activation of at least 18 electrophoretically distinct cysteine-dependent aspartate-directed protease (caspase) isoforms, several of which differ only in their isoelectric points. The purpose of the present study was to determine whether activated caspases are phosphorylated. Phosphatase treatment of cytosolic extracts containing active caspases followed by affinity labeling with N-(N-benzyloxycarbonylglutamyl-N-biotinyllysyl)aspartic acid [(2,6-dimethylbenzoyl)oxy] methyl ketone (Z-EK(bio)D-aomk) showed a mobility shift in several of the labeled species, suggesting that phosphorylated forms of these enzymes are present in the extracts. Metabolic labeling with 32P followed by etoposide treatment and subsequent affinity purification of affinity-labeled caspases confirmed that at least three caspase species were phosphorylated. To detect effects of the phosphorylation on enzymatic activity, caspase-mediated cleavage of aspartylglutamylvalinylaspartyl-7-amino-4-trifluoromethylcoumarin (DEVD-AFC) and poly(ADP-ribose) polymerase (PARP) by phosphorylated and dephosphorylated extracts was measured. No significant changes in Km or vmax were detected using DEVD-AFC. In contrast, a slight, but significant enhancement of PARP cleavage was observed in dephosphorylated extracts, suggesting that phosphorylation of active caspases could have an inhibitory effect on enzyme activity. These observations, which provide the first evidence that caspases are phosphoproteins, suggest that caspases may be targets for some of the growing list of protein kinases that are involved in apoptotic events. © 1998 by The American Society of Hematology.


2019 ◽  
Vol 7 (10) ◽  
pp. 4166-4173 ◽  
Author(s):  
Hua Wang ◽  
Yang Liu ◽  
Ming Xu ◽  
Jianjun Cheng

Azido-galactose can metabolically label liver cancer cells with azido groups, for subsequent targeted delivery of therapeutics via efficient Click chemistry.


2021 ◽  
Author(s):  
Xun Liu ◽  
Fan Wu ◽  
Kaimin Cai ◽  
Ziyin Zhao ◽  
Zhimin Zhang ◽  
...  

DCL-AAM selectively labels cancer cells with azido groups, and thus allows tumor-targeted delivery of DBCO-cisplatin prodrug via bioorthogonal click chemistry.


2015 ◽  
Vol 6 (8) ◽  
pp. 4681-4689 ◽  
Author(s):  
Weixuan Chen ◽  
Johanna M. Smeekens ◽  
Ronghu Wu

A method integrating metabolic labeling, copper-free click chemistry and MS-based proteomics is effective to globally and site-specifically analyze surface N-sialoglycoproteins.


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