Long Fragment Read (LFR) Technology: Cost-Effective, High-Quality Genome-Wide Molecular Haplotyping

2017 ◽  
pp. 191-205 ◽  
Author(s):  
Mark A. McElwain ◽  
Rebecca Yu Zhang ◽  
Radoje Drmanac ◽  
Brock A. Peters
Keyword(s):  
Cost Effective ◽  
High Quality ◽  
Genome Wide ◽  
High Quality Genome ◽  
Long Fragment Read

scholarly journals High-Quality Genome Resource of the Pathogen of Diaporthe (Phomopsis) phragmitis Causing Kiwifruit Soft Rot

2020 ◽  
Author(s):  
Pu Liu ◽  
Wang Xiaojie ◽  
Dong Hongjie ◽  
Jianbin Lan ◽  
Kuan Liang ◽  
...  
Keyword(s):  
Plant Pathogens ◽  
Management Strategies ◽  
Soft Rot ◽  
Fruit Rot ◽  
Economic Plant ◽  
High Quality ◽  
Total Size ◽  
Genome Wide ◽  
Solid Foundation ◽  
High Quality Genome

Diaporthe spp. are critical plant pathogens that cause wood cankers, wilt, dieback, and fruit rot in a wide variety of economic plant hosts and are regarded as one of the most acute threats faced by kiwifruit industry worldwide. Diaporthe phragmitis strain NJD1 is a highly pathogenic isolate of soft rot of kiwifruit. Here, we present a high-quality genome-wide sequence of D. phragmitis NJD1 that was assembled into 28 contigs containing a total size of 58.33 Mb and N50 length of 3.55 Mb. These results lay a solid foundation for understanding host–pathogen interaction and improving disease management strategies.

scholarly journals High-quality, genome-wide SNP genotypic data for pedigreed germplasm of the diploid outbreeding species apple, peach, and sweet cherry through a common workflow

PLoS ONE ◽  
2019 ◽  
Vol 14 (6) ◽  
pp. e0210928 ◽  
Author(s):  
Stijn Vanderzande ◽  
Nicholas P. Howard ◽  
Lichun Cai ◽  
Cassia Da Silva Linge ◽  
Laima Antanaviciute ◽  
...  
Keyword(s):  
Sweet Cherry ◽  
High Quality ◽  
Genome Wide ◽  
High Quality Genome

scholarly journals High Quality Genome-Wide Genotyping from Archived Dried Blood Spots without DNA Amplification

PLoS ONE ◽  
2013 ◽  
Vol 8 (5) ◽  
pp. e64710 ◽  
Author(s):  
Krystal R. St. Julien ◽  
Laura L. Jelliffe-Pawlowski ◽  
Gary M. Shaw ◽  
David K. Stevenson ◽  
Hugh M. O’Brodovich ◽  
...  
Keyword(s):  
Dna Amplification ◽  
Dried Blood Spots ◽  
High Quality ◽  
Blood Spots ◽  
Genome Wide ◽  
High Quality Genome

scholarly journals RADpainter and fineRADstructure: population inference from RADseq data

2016 ◽  
Author(s):  
Milan Malinsky ◽  
Emiliano Trucchi ◽  
Daniel John Lawson ◽  
Daniel Falush
Keyword(s):  
Clustering Algorithm ◽  
Restriction Site ◽  
Model Organism ◽  
Rad Sequencing ◽  
Nearest Neighbour ◽  
High Quality ◽  
Population Inference ◽  
Genome Wide ◽  
Haplotype Data ◽  
High Quality Genome

AbstractPowerful approaches to inferring recent or current population structure based on nearest neighbour haplotype ‘coancestry’ have so far been inaccessible to users without high quality genome-wide haplotype data. With a boom in non-model organism genomics, there is a pressing need to bring these methods to communities without access to such data. Here we present RADpainter, a new program designed to infer the coancestry matrix from restriction-site-associated DNA sequencing (RADseq) data. We combine this program together with a previously published MCMC clustering algorithm into fineRADstructure - a complete, easy to use, and fast population inference package for RADseq data (https://github.com/millanek/fineRADstructure). Finally, with two example datasets, we illustrate its use, benefits, and robustness to missing RAD alleles in double digest RAD sequencing.

The Formability and Elongation of Aluminum Alloys AA5083 and AA3003 for Micro-Truss Sandwiches Manufacturing

2020 ◽  
Vol 38 (9A) ◽  
pp. 1396-1405
Author(s):  
Arwa F. Tawfeeq ◽  
Matthew R. Barnett
Keyword(s):  
Aluminum Alloy ◽  
Strain Rate ◽  
Cost Effective ◽  
Tensile Tests ◽  
Truss Structures ◽  
High Quality ◽  
Trade Off ◽  
Clad Layer ◽  
Higher Temperature ◽  
Different Shapes

The development in the manufacturing of micro-truss structures has demonstrated the effectiveness of brazing for assembling these sandwiches, which opens new opportunities for cost-effective and high-quality truss manufacturing. An evolving idea in micro-truss manufacturing is the possibility of forming these structures in different shapes with the aid of elevated temperature. This work investigates the formability and elongation of aluminum alloy sheets typically used for micro-truss manufacturing, namely AA5083 and AA3003. Tensile tests were performed at a temperature in the range of 25-500 ○C and strain rate in the range of 2x10-4 -10-2 s-1. The results showed that the clad layer in AA3003 exhibited an insignificant effect on the formability and elongation of AA3003. The formability of the two alloys was improved significantly with values of m as high as 0.4 and 0.13 for AA5083 and AA3003 at 500 °C. While the elongation of both AA5083 and AA3003 was improved at a higher temperature, the elongation of AA5083 was inversely related to strain rate. It was concluded that the higher the temperature is the better the formability and elongation of the two alloys but at the expense of work hardening. This suggests a trade-off situation between formability and strength. 

High-quality genome assembly of Huazhan and Tianfeng, the parents of an elite rice hybrid Tian-you-hua-zhan

2021 ◽  
Author(s):  
Hui Zhang ◽  
Yuexing Wang ◽  
Ce Deng ◽  
Sheng Zhao ◽  
Peng Zhang ◽  
...  
Keyword(s):  
Genome Assembly ◽  
High Quality ◽  
Rice Hybrid ◽  
High Quality Genome

scholarly journals 2D-3D integration of hexagonal boron nitride and a high-κ dielectric for ultrafast graphene-based electro-absorption modulators

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Hitesh Agarwal ◽  
Bernat Terrés ◽  
Lorenzo Orsini ◽  
Alberto Montanaro ◽  
Vito Sorianello ◽  
...  
Keyword(s):  
Boron Nitride ◽  
Hafnium Oxide ◽  
High Speed ◽  
Hexagonal Boron Nitride ◽  
Temperature Stability ◽  
Cost Effective ◽  
Fold Increase ◽  
Building Blocks ◽  
High Quality ◽  
New Device

AbstractElectro-absorption (EA) waveguide-coupled modulators are essential building blocks for on-chip optical communications. Compared to state-of-the-art silicon (Si) devices, graphene-based EA modulators promise smaller footprints, larger temperature stability, cost-effective integration and high speeds. However, combining high speed and large modulation efficiencies in a single graphene-based device has remained elusive so far. In this work, we overcome this fundamental trade-off by demonstrating the 2D-3D dielectric integration in a high-quality encapsulated graphene device. We integrated hafnium oxide (HfO2) and two-dimensional hexagonal boron nitride (hBN) within the insulating section of a double-layer (DL) graphene EA modulator. This combination of materials allows for a high-quality modulator device with high performances: a ~39 GHz bandwidth (BW) with a three-fold increase in modulation efficiency compared to previously reported high-speed modulators. This 2D-3D dielectric integration paves the way to a plethora of electronic and opto-electronic devices with enhanced performance and stability, while expanding the freedom for new device designs.

scholarly journals Fast and Cost-Effective Synthesis of High-Quality Graphene on Copper Foils Using High-Current Arc Evaporation

Materials ◽  
2018 ◽  
Vol 11 (5) ◽  
pp. 804 ◽  
Author(s):  
Helge Lux ◽  
Matthias Edling ◽  
Peter Siemroth ◽  
Sigurd Schrader
Keyword(s):  
Cost Effective ◽  
High Current ◽  
High Quality ◽  
Copper Foils ◽  
Effective Synthesis ◽  
Arc Evaporation
Sign in / Sign up

Export Citation Format

Share Document