Automated Processing of Micro-CT Scans Using Descriptor-Based Registration of 3D Images

Author(s):  
Jakub Kamiński ◽  
Barłomiej Trzewiczek ◽  
Sebastian Wroński ◽  
Jacek Tarasiuk
Insects ◽  
2018 ◽  
Vol 9 (3) ◽  
pp. 100 ◽  
Author(s):  
Ignacio Alba-Alejandre ◽  
Javier Alba-Tercedor ◽  
Fernando Vega

The coffee bean weevil, Araecerus fasciculatus (De Geer) (Coleoptera: Anthribidae), is a cosmopolitan insect with >100 hosts, and has been reported as a pest of stored coffee. During a study involving the coffee berry borer, we observed coffee bean weevils emerging from field-collected coffee berries and used micro-computerized tomography (micro-CT) scans to observe the insect inside the berry. Two eggs had eclosed inside the berry, resulting in observations of a newly eclosed adult beetle and a 5th instar larva, each feeding on one of the two seeds. This is the first time since 1775, when the insect was first described, that the insect has been observed inside a coffee berry.


2019 ◽  
Vol 38 (1) ◽  
pp. 63 ◽  
Author(s):  
Leszek Karol Wojnar ◽  
Aneta Gądek-Moszczak ◽  
Jacek Pietraszek

The well-documented relation between bone mineral density (BMD) and bone compression strength constitutes the basis for osteoporosis diagnostics and the assessment of fracture risk. Simultaneously, this relation demonstrates a considerable scatter of results as bones of identical mineral density may have significantly different properties. The experimentally confirmed theorem that two materials or tissues of identical microstructure have identical properties leads to the evaluation of various quantitative stereological parameters (also referred to in biomedicine as histomorphology). These parameters, obtained from analysis of 2D or 3D images, have been used in numerous attempts to explain changes in bone strength. Although numerous correlation dependencies, often with high correlation coefficients, were evaluated, we do not know which parameters are worth evaluating, and there is no physical interpretation of these relations. An extended statistical analysis was accomplished on the basis of analysis of 3D images from 23 lumbar (L3) vertebrae scanned with micro-CT and the results of subsequent compression tests. A new parameter called SDF (structure destruction factor) was proposed in order to characterise the quality of 3D trabecular structures, and its significance was demonstrated. The final correlation function, which uses only three stereological parameters, made it possible to predict compression strength with considerable precision. The estimated values correlated very well with the apparent values (correlation coefficient r=0.96). Finally, the stereological parameters most suitable for characterisation of bone compression strength were chosen and a mechanism responsible for the changes in mechanical properties was proposed. The results obtained defined the necessary improvements in diagnostic techniques that would allow for more efficient quantitative microstructure evaluation and guidelines on how to improve treatment of patients with weakened bones.


Author(s):  
Sydney R. Mohr ◽  
John H. Acorn ◽  
Gregory F. Funston ◽  
Philip J. Currie

The Cretaceous birds of Alberta are poorly known, as skeletal elements are rare and typically consist of fragmentary postcranial remains. A partial avian coracoid from the upper Campanian Dinosaur Park Formation of Alberta, Canada, can be referred to the Ornithurae, and is referred to here as Ornithurine G (cf. Cimolopteryx). Its structure is similar to previously described ornithurine coracoids from Alberta and other localities in North America, particularly those belonging to the genus Cimolopteryx. A comparison of these elements indicates that the new coracoid is distinct; however, its preservation prevents complete diagnosis. As other Cimolopteryx are Maastrichtian in age, Ornithurine G (cf. Cimolopteryx) also represents the earliest occurrence of a Cimolopteryx-like anatomy. A pneumatized coracoid is a diagnostic trait of Neornithes, identified by the presence of a pneumatic foramen. Ornithurine G (cf. Cimolopteryx) does not preserve this feature. CT and micro-CT scans of both pneumatic and apneumatic coracoids of modern birds show similar internal structures to Ornithurine G (cf. Cimolopteryx), indicating that pneumaticity of the coracoid cannot be determined in the absence of an external pneumatic foramen. A comparison between members of Cimolopterygidae, including Cimolopteryx and Lamarqueavis, raises questions about the assignment of Lamarqueavis to the Cimolopterygidae, and the validity of this family as a whole.


2013 ◽  
Vol 671-674 ◽  
pp. 1830-1834
Author(s):  
Yun Tao Ji ◽  
Patrick Baud ◽  
Teng Fong Wong ◽  
Li Qiang Liu

The pore structure in intact and inelastically deformed Indiana limestone have been studied using x-ray microtomography imaging. Guided by detailed microstructural observations and using Multi-level Otsu’s thresholding method, the 3D images acquired at voxel side length of 4 μm were segmented into three domains: solid grains, macropores and an intermediate zone dominated by microporosity. Local Porosity can be defined to infer the porosity of each voxel. The macropores were individually identified by morphological processing and their shape quantified by their sphericity and equivalent diameter. With this segmentation, we obtained statistics on macropores on intact and deformed Indiana limestone which shows that inelastic compaction was followed by a significant reduction in the number of macropores. And also our results revealed the great potentiality to produce a quantitative analysis on porous material with the aid of micro CT images.


2015 ◽  
Vol 9 (1) ◽  
pp. 60-68 ◽  
Author(s):  
Nobuyuki Miyahara ◽  
Toshiaki Kokubo ◽  
Yukihiro Hara ◽  
Ayuta Yamada ◽  
Takafumi Koike ◽  
...  

Author(s):  
Piotr A. Kowalski ◽  
Jakub Kamiński ◽  
Szymon Łukasik ◽  
Joanna Świebocka-Wiȩk ◽  
Dominika Gołuńska ◽  
...  

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Gary A. Kendrick ◽  
Andrew W. Pomeroy ◽  
Robert J. Orth ◽  
Marion L. Cambridge ◽  
Jeremy Shaw ◽  
...  

AbstractSeeds of Australian species of the seagrass genus Posidonia are covered by a membranous wing that we hypothesize plays a fundamental role in seed establishment in sandy, wave swept marine environments. Dimensions of the seed and membrane were quantified under electron microscopy and micro-CT scans, and used to model rotational, drag and lift forces. Seeds maintain contact with the seabed in the presence of strong turbulence: the larger the wing, the more stable the seed. Wing surface area increases from P. sinuosa < P. australis < P.coriacea correlating with their ability to establish in increasingly energetic environments. This unique seed trait in a marine angiosperm corresponds to adaptive pressures imposed on seagrass species along 7,500 km of Australia’s coastline, from open, high energy coasts to calmer environments in bays and estuaries.


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