scholarly journals Erratum to: Application of Next-Generation Sequencing to Hearing Loss

2017 ◽  
pp. E1-E1
Author(s):  
Lisa Dyer ◽  
Xinjian Wang ◽  
Kejian Zhang ◽  
John Greinwald ◽  
C. Alexander Valencia
Keyword(s):  
Hearing Loss ◽  
Next Generation Sequencing ◽  
Next Generation ◽  
Generation Sequencing

scholarly journals A Novel Heterozygous Mutation of the COL4A3 Gene Causes a Peculiar Phenotype without Hematuria and Renal Function Impairment in a Chinese Family

2019 ◽  
Vol 2019 ◽  
pp. 1-8 ◽  
Author(s):  
Liang Xia ◽  
Yangjia Cao ◽  
Yang Guo ◽  
Guangyi Ba ◽  
Qiong Luo ◽  
...  
Keyword(s):  
Hearing Loss ◽  
Next Generation Sequencing ◽  
Collagen Iv ◽  
Chinese Family ◽  
Heterozygous Mutation ◽  
Next Generation ◽  
Structural Protein ◽  
Type Iv ◽  
Function Impairment ◽  
Generation Sequencing

Mutations in the COL4A3 gene are frequently reported to be associated with various types of hereditary nephropathy. COL4A3 encodes the α3 chain of type IV collagen, which is the main structural protein in the basement membrane. Mutations in this gene are always related to kidney performance, and deafness and ocular lesion have also been reported. In this study, using next-generation sequencing, we investigated the DNA of a family visiting a clinic for hearing loss. A new missense mutation was found in COL4A3 of 5 patients, c.3227C>T (p.P1076L). Based on these results, we predict that the mutation is pathogenic and leads to abnormal collagen IV. Here, we report for the first time on this autosomal dominant syndrome, characterized by hearing loss and eye abnormalities, but without renal damage, in all carriers. Since the oldest patient in the trial was less than 50 years old, however, we recommend that renal examination be reviewed regularly. Our results reveal expansion in the mutation spectrum of the COL4A3 gene and phenotypic spectrum of collagen IV disease. Our study suggests that next-generation sequencing is an economical and effective method and may help in the accurate diagnosis and treatment of these patients.

scholarly journals Development and Validation of a Next-Generation Sequencing Panel for Syndromic and Nonsyndromic Hearing Loss

2020 ◽  
Vol 5 (3) ◽  
pp. 467-479 ◽  
Author(s):  
Malinda Butz ◽  
Amber McDonald ◽  
Patrick A Lundquist ◽  
Melanie Meyer ◽  
Sean Harrington ◽  
...  
Keyword(s):  
Hearing Loss ◽  
Next Generation Sequencing ◽  
Copy Number Variants ◽  
Analytical Sensitivity ◽  
Nonsyndromic Hearing Loss ◽  
Next Generation ◽  
Single Nucleotide Variants ◽  
Small Indels ◽  
Syndromic Hearing Loss ◽  
Generation Sequencing

Abstract Background Deafness and hearing loss are common conditions that can be seen independently or as part of a syndrome and are often mediated by genetic causes. We sought to develop and validate a hereditary hearing loss panel (HHLP) to detect single nucleotide variants (SNVs), insertions and deletions (indels), and copy number variants (CNVs) in 166 genes related to nonsyndromic and syndromic hearing loss. Methods We developed a custom-capture next-generation sequencing (NGS) reagent to detect all coding regions, ±10 flanking bp, for the 166 genes related to nonsyndromic and syndromic hearing loss. Our validation consisted of testing 52 samples to establish accuracy, reproducibility, and analytical sensitivity. In addition to NGS, supplementary methods, including multiplex ligation-dependent probe amplification, long-range PCR, and Sanger sequencing, were used to ensure coverage of regions that had high complexity or homology. Results We observed 100% positive and negative percentage agreement for detection of SNVs (n = 362), small indels (1–22 bp, n = 25), and CNVs (gains, n = 8; losses, n = 17). Finally, we showed that this assay was able to detect variants with a variant allele frequency ≥20% for SNVs and indels and ≥30% to 35% for CNVs. Conclusions We validated an HHLP that detects SNVs, indels, and CNVs in 166 genes related to syndromic and nonsyndromic hearing loss. The results of this assay can be utilized to confirm a diagnosis of hearing loss and related syndromic disorders associated with known causal genes.

scholarly journals Molekulares Verstehen des Hörens – Was ändert sich für den Patienten?

2018 ◽  
Vol 97 (S 01) ◽  
pp. S214-S230 ◽  
Author(s):  
Tobias Moser
Keyword(s):  
Hearing Loss ◽  
Next Generation Sequencing ◽  
Next Generation ◽  
Kausale Therapie ◽  
Molekulare Analyse ◽  
Hidden Hearing Loss ◽  
Next Generation Sequencing Ngs ◽  
Generation Sequencing ◽  
Eine Verbesserte

ZusammenfassungDas Innenohr und die Hörbahn mit ihren vergleichsweise geringen Zellzahlen haben sich einigen molekularen Ansätzen bislang beharrlich entzogen. Gleichzeitig vollbringt das Hören Spitzenleistungen, die sehr spezialisierte biologische Mechanismen nahelegen. Dies bedeutet einerseits, dass Analogieschlüsse zur molekularen Anatomie und Physiologie der Zellen des Hörsystems auf der Grundlage von Erkenntnissen aus molekular besser zugänglichen Systemen von beschränktem Nutzen sind. Andererseits legt eine solche Spezialisierung Gendefekte nahe, die von der Evolution toleriert wurden, weil sie nicht zur Fehlfunktion von essentiellen Körperprozessen führen. Technologische Fortschritte in der Humangenetik und der molekularen Analyse des Innenohrs im Tier bestätigen beide Annahmen und beleuchten den faszinierenden Mikrokosmos der Cochlea. Auf kleinstem Raum werden hier in konsequenter Arbeitsteilung herausragende Leistungen im Ionentransport, der Mechanotransduktion, der aktiven Zellmotilität und der synaptischen Verarbeitung erbracht. Einige der zugrundeliegenden molekularen Maschinen, z. B. das Motorprotein Prestin und das an synaptischer Fusion beteiligte Otoferlin, sind ausschließlich im Ohr aktiv. Dementsprechend führen ihre Defekte zu spezifischen nicht-syndromalen Schwerhörigkeiten, wie etwa bei der auditorischen Synaptopathie durch autosomal rezessive Mutationen im Otoferlin-Gen. Andere Mutationen, wie die den cochleären Kalium-Zyklus betreffenden, bedingen einen globalen Funktionsverlust der Cochlea. Viele genetische Defekte führen schließlich zur Degeneration des Innenohrs. Letztlich führt die molekulare Analyse sowohl beim Menschen, als auch im Tier-Innenohr aber auch zu neuen Erkenntnissen für häufige Formen der Schwerhörigkeit. So wurde der immunhistochemische Nachweis des Verlusts von Bandsynapsen der inneren Haarzellen zum Biomarker für „hidden hearing loss“ im Tiermodell. Die moderne Hochdurchsatz-Sequenzierung (sog. Next Generation Sequencing – NGS) bietet Zugang zu bislang nicht bekannten Taubheitsgenen, Mutationsspektren von bekannten Taubheitsgenen und zu einem genetischen Profil der individuellen Schwerhörigkeit, ihre Interpretation erfordert jedoch große humangenetische Expertise und umfangreiche tierexperimentelle Einsichten. Eine kausale Therapie etwa durch viralen Genersatz, der im Tier-Innenohr und bei einzelnen Formen der humanen Blindheit bereits erfolgreich ist, steht für die Schwerhörigkeit in der Klinik noch nicht zur Verfügung. Bereits jetzt ermöglichen molekulare Ansätze aber schon eine verbesserte Beratung von schwerhörigen Patienten.

scholarly journals A Case of Streptococcus Suis Meningitis With Visual Impairment and Hearing Loss Diagnosed by Metagenomic Next-generation Sequencing

2021 ◽  
Author(s):  
Haina Zhao ◽  
Lanlan Chen ◽  
Lin Zhu ◽  
Tingting Qiao ◽  
Peipei Liu ◽  
...  
Keyword(s):  
Cerebrospinal Fluid ◽  
Hearing Loss ◽  
Next Generation Sequencing ◽  
Infectious Diseases ◽  
Visual Impairment ◽  
Vision Loss ◽  
Streptococcus Suis ◽  
Next Generation ◽  
The Right ◽  
Generation Sequencing

Abstract Background: Streptococcus suis is responsible for several kinds of zoonosis worldwide. It can cause meningitis, sepsis, osteoarthritis, endocarditis, endophthalmitis, and other diseases. Human infection typically occurs in occupational settings associated with pig husbandry or pork processing. At present, metagenomic next-generation sequencing (mNGS) is prominent testing method for achieving an early and rapid diagnosis of some infectious diseases. Case presentation: A 48-year-old Chinese man who denied exposure to pigs or pork was to admitted the hospital because he had experienced a fever for three days, visual impairment, and hearing loss for one day. After a series of examinations and laboratory tests, Streptococcus suis was detected in the aqueous humor culture as well as the vitreous humor and cerebrospinal fluid with mNGS. But bacteria were not detected in the blood or cerebrospinal fluid culture. The patient's condition improved, and he was discharged after 2 weeks of active treatment. However, at present, poor vision in the right eye, poor hearing in the right ear and recurrent vertigo remain.Conclusions: In a patient presenting with meningitis, vision loss, and/or hearing loss, Streptococcus suis infection should be strongly suspected regardless of the patient's occupation. mNGS has excellent diagnostic value to determine which was the etiological agent for infectious diseases.

scholarly journals Compound Heterozygous Mutations in TMC1 and MYO15A Are Associated with Autosomal Recessive Nonsyndromic Hearing Loss in Two Chinese Han Families

2020 ◽  
Vol 2020 ◽  
pp. 1-7
Author(s):  
Pengcheng Xu ◽  
Jun Xu ◽  
Hu Peng ◽  
Tao Yang
Keyword(s):  
Hearing Loss ◽  
Next Generation Sequencing ◽  
Genetic Diagnosis ◽  
Compound Heterozygous ◽  
Next Generation ◽  
Chinese Han ◽  
Targeted Next Generation Sequencing ◽  
Recessive Mutations ◽  
Compound Heterozygous Mutations ◽  
Generation Sequencing

Genetic hearing loss is a common sensory disorder, and its cause is highly heterogeneous. In this study, by targeted next-generation sequencing of 414 known deafness genes, we identified compound heterozygous mutations p.R34X/p.M413T in TMC1 and p.S3417del/p.R1407T in MYO15A in two recessive Chinese Han deaf families. Intrafamilial cosegregation of the mutations with the hearing phenotype was confirmed in both families by the Sanger sequencing. Auditory features of the affected individuals are consistent with that previously reported for recessive mutations in TMC1 and MYO15A. The two novel mutations identified in this study, p.M413T in TMC1 and p.R1407T in MYO15A, are classified as likely pathogenic according to the guidelines of ACMG. Our study expanded the mutation spectrums of TMC1 and MYO15A and illustrated that genotype-phenotype correlation in combination with next-generation sequencing may improve the accuracy for genetic diagnosis of deafness.

scholarly journals Targeted Next-Generation Sequencing Identified Compound Heterozygous Mutations in MYO15A as the Probable Cause of Nonsyndromic Deafness in a Chinese Han Family

2020 ◽  
Vol 2020 ◽  
pp. 1-6
Author(s):  
Longhao Wang ◽  
Lin Zhao ◽  
Hu Peng ◽  
Jun Xu ◽  
Yun Lin ◽  
...  
Keyword(s):  
Hearing Loss ◽  
Next Generation Sequencing ◽  
Cochlear Implantation ◽  
Compound Heterozygous ◽  
Next Generation ◽  
Chinese Han ◽  
Targeted Next Generation Sequencing ◽  
Before And After ◽  
Compound Heterozygous Mutations ◽  
Generation Sequencing

Hearing loss is a highly heterogeneous disorder, with more than 60% of congenital cases caused by genetic factors. This study is aimed at identifying the genetic cause of congenital hearing loss in a Chinese Han family. Auditory evaluation before and after cochlear implantation and targeted next-generation sequencing of 140 deafness-related genes were performed for the deaf proband. Compound heterozygous mutations c.3658_3662del (p. E1221Wfs∗23) and c.6177+1G>T were identified in MYO15A as the only candidate pathogenic mutations cosegregated with the hearing loss in this family. These two variants were absent in 200 normal-hearing Chinese Hans and were classified as likely pathogenic and pathogenic, respectively, based on the ACMG guideline. Our study further expanded the mutation spectrum of MYO15A as the c.3658_3662del mutation is novel and confirmed that deaf patients with recessive MYO15A mutations have a good outcome for cochlear implantation.

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