scholarly journals Microautoradiography (MAR)

2021 ◽  
pp. 197-205
Author(s):  
Tomoko M. Nakanishi

AbstractMAR was developed to increase the resolution of the image for the sliced plant sample. This revised MAR method showed the detailed distribution of 137Cs accumulation in embryos, which indicated that the plumule and radicle, which grow as a meristem of a root or shoot, were protected from the accumulation of heavy elements. Because of daguerreotype imaging, MAR is now hardly used, and the film emulsion is not available. Here, this method was essentially recreated with a revised processing method for both sample preparation and imaging process.

Author(s):  
Changhua Zhu ◽  
Xiaoye Liu ◽  
Wenlei Wang ◽  
Xiaoguang Chen ◽  
Shangyu Gao ◽  
...  

Author(s):  
I.N. Pisareva ◽  
◽  
O.Yu. Slovareva ◽  

The study is devoted to the diagnosis of bacterial canker of tomato (Cmm). The method of sampling and plant sample preparation has been adapted. PCR recommended by the international diagnostic protocol and other sources have been tested. The use of methods made it possible to identify Cmm in plant material


2016 ◽  
Vol 23 (2) ◽  
pp. 629-634 ◽  
Author(s):  
Ashwani Kumar ◽  
Biplab Ghosh ◽  
H. K. Poswal ◽  
K. K. Pandey ◽  
Jagannath ◽  
...  

The protein crystallography beamline (PX-BL21), installed at the 1.5 T bending-magnet port at the Indian synchrotron (Indus-2), is now available to users. The beamline can be used for X-ray diffraction measurements on a single crystal of macromolecules such as proteins, nucleic acids and their complexes. PX-BL21 has a working energy range of 5–20 keV for accessing the absorption edges of heavy elements commonly used for phasing. A double-crystal monochromator [Si(111) and Si(220)] and a pair of rhodium-coated X-ray mirrors are used for beam monochromatization and manipulation, respectively. This beamline is equipped with a single-axis goniometer, Rayonix MX225 CCD detector, fluorescence detector, cryogenic sample cooler and automated sample changer. Additional user facilities include a workstation for on-site data processing and a biochemistry laboratory for sample preparation. In this article the beamline, other facilities and some recent scientific results are briefly described.


2001 ◽  
Vol 64 (10) ◽  
pp. 1459-1465 ◽  
Author(s):  
ANDREA B. BURNETT ◽  
LARRY R. BEUCHAT

Methods for preparing raw fruits, vegetables, and herbs for enrichment or direct plating to determine the presence and populations of pathogenic bacteria vary greatly. A study was done to compare three sample processing methods (washing in 0.1% peptone, stomaching, and homogenizing) for their influence on recovery of Salmonella inoculated onto 26 types of raw produce. The mean numbers of Salmonella recovered from 10 fruits, 11 vegetables, and 5 herbs using all three processing methods were 7.17, 7.40, and 7.27 log10 CFU/sample, respectively. Considering all 26 types of produce and all processing methods, the number of Salmonella recovered ranged from 7.24 to 7.29 log10 CFU/sample, with no significant differences attributable to a particular sample processing method. Mean percent recoveries of Salmonella from washed, stomached, and homogenized produce were 39.4, 44.7, and 42.4%, respectively. Mean percent recoveries from fruits, vegetables, and herbs, regardless of sample preparation method, were 41.7, 50.1, and 25.9%, respectively. The number of Salmonella recovered from stomached and homogenized produce, but not washed produce, with pH ≤ 4.53 was significantly less than the number recovered from produce with pH from 5.53 to 5.99, suggesting that the acidic environment in stomachates and homogenates was lethal to a portion of Salmonella. Reduced percent recoveries from herbs (pH 5.94 to 6.34) is attributed, in part, to antimicrobials released from plant cells during sample preparation. Overall, the type of processing method did not substantially affect the number of Salmonella recovered from the 26 types of raw produce representing a wide range of structural and morphological characteristics, composition, and pH. The influence of sample size, diluent composition, and processing time on efficiency of recovery of Salmonella and other pathogens needs to be evaluated before a method(s) for processing samples of raw produce can be recommended.


2021 ◽  
Vol 12 ◽  
Author(s):  
Kamil Mikulášek ◽  
Hana Konečná ◽  
David Potěšil ◽  
Renata Holánková ◽  
Jan Havliš ◽  
...  

Quantitative protein extraction from biological samples, as well as contaminants removal before LC-MS/MS, is fundamental for the successful bottom-up proteomic analysis. Four sample preparation methods, including the filter-aided sample preparation (FASP), two single-pot solid-phase-enhanced sample preparations (SP3) on carboxylated or HILIC paramagnetic beads, and protein suspension trapping method (S-Trap) were evaluated for SDS removal and protein digestion from Arabidopsis thaliana (AT) lysate. Finally, the optimized carboxylated SP3 workflow was benchmarked closely against the routine FASP. Ultimately, LC-MS/MS analyses revealed that regarding the number of identifications, number of missed cleavages, proteome coverage, repeatability, reduction of handling time, and cost per assay, the SP3 on carboxylated magnetic particles proved to be the best alternative for SDS and other contaminants removal from plant sample lysate. A robust and efficient 2-h SP3 protocol for a wide range of protein input is presented, benefiting from no need to adjust the amount of beads, binding and rinsing conditions, or digestion parameters.


2015 ◽  
Vol 98 (2) ◽  
pp. 415-421 ◽  
Author(s):  
Dorota Wianowska ◽  
Rafał Typek ◽  
Andrzej L Dawidowicz

Abstract Chlorogenic acids (CQAs) are phenolic compounds naturally occurring in all higher plants. They are potentially useful in pharmaceuticals, foodstuffs, food additives, and cosmetics due to their recently suggested biomedical activity. Hence, research interestin CQA properties, their isomers, and natural occurrence has been growing. Pressurized liquid extraction(PLE) is regarded as an effective and quick sample preparation method in plant analysis. The short time of PLE decreases the risk of chemical degradation ofextracted compounds, thus increasing the attractiveness of its application. However, PLE applied for plant sample preparation is not free from limitations. We found that trans-5-O-caffeoylquinic acid (trans-5-CQA), the main CQA isomer, isomerizes to 3- and 4-O-caffeoylquinic acids and undergoes transesterification, hydrolysis, and reaction with water even in rapid PLE. Moreover, the number and concentration of trans-5-CQA derivatives formed in PLE strongly depends on extractant composition, its pH, and extraction time and temperature. It was not possible to find the PLE conditions in which the transformation process of trans-5-CQA would be eliminated.


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