scholarly journals Genetic diversity, distribution and domestication history of the neglected GGAtAt genepool of wheat

Author(s):  
Ekaterina D. Badaeva ◽  
Fedor A. Konovalov ◽  
Helmut Knüpfer ◽  
Agostino Fricano ◽  
Alevtina S. Ruban ◽  
...  

Abstract Key message We present a comprehensive survey of cytogenetic and genomic diversity of the GGAtAt genepool of wheat, thereby unlocking these plant genetic resources for wheat improvement. Abstract Wheat yields are stagnating around the world and new sources of genes for resistance or tolerances to abiotic traits are required. In this context, the tetraploid wheat wild relatives are among the key candidates for wheat improvement. Despite its potential huge value for wheat breeding, the tetraploid GGAtAt genepool is largely neglected. Understanding the population structure, native distribution range, intraspecific variation of the entire tetraploid GGAtAt genepool and its domestication history would further its use for wheat improvement. The paper provides the first comprehensive survey of genomic and cytogenetic diversity sampling the full breadth and depth of the tetraploid GGAtAt genepool. According to the results obtained, the extant GGAtAt genepool consists of three distinct lineages. We provide detailed insights into the cytogenetic composition of GGAtAt wheats, revealed group- and population-specific markers and show that chromosomal rearrangements play an important role in intraspecific diversity of T. araraticum. The origin and domestication history of the GGAtAt lineages is discussed in the context of state-of-the-art archaeobotanical finds. We shed new light on the complex evolutionary history of the GGAtAt wheat genepool and provide the basis for an increased use of the GGAtAt wheat genepool for wheat improvement. The findings have implications for our understanding of the origins of agriculture in southwest Asia.

2021 ◽  
Author(s):  
Ekaterina D. Badaeva ◽  
Fedor A. Konovalov ◽  
Helmut Knüpffer ◽  
Agostino Fricano ◽  
Alevtina S. Ruban ◽  
...  

AbstractBackgroundWheat yields are stagnating around the world and new sources of genes for resistance or tolerances to abiotic traits are required. In this context, the tetraploid wheat wild relatives are among the key candidates for wheat improvement. Despite of its potential huge value for wheat breeding, the tetraploid GGAtAt genepool is largely neglected. Understanding the population structure, native distribution range, intraspecific variation of the entire tetraploid GGAtAt genepool and its domestication history would further its use for wheat improvement.ResultsWe report the first comprehensive survey of genomic and cytogenetic diversity sampling the full breadth and depth of the tetraploid GGAtAt genepool. We show that the extant GGAtAt genepool consists of three distinct lineages. We provide detailed insights into the cytogenetic composition of GGAtAt wheats, revealed group-, and population-specific markers and show that chromosomal rearrangements play an important role in intraspecific diversity of T. araraticum. We discuss the origin and domestication history of the GGAtAt lineages in the context of state-of-the-art archaeobotanical finds.ConclusionsWe shed new light on the complex evolutionary history of the GGAtAt wheat genepool. We provide the basis for an increased use of the GGAtAt wheat genepool for wheat improvement. The findings have implications for our understanding of the origins of agriculture in southwest Asia.


2021 ◽  
Author(s):  
Ekaterina D Badaeva ◽  
Fedor A. Konovalov ◽  
Helmut KWS ◽  
Agostino Friscano ◽  
Alevtina S. Ruban ◽  
...  

Abstract Wheat yields are stagnating around the world and new sources of genes for resistance or tolerances to abiotic traits are required. In this context, the tetraploid wheat wild relatives are among the key candidates for wheat improvement. Despite of its potential huge value for wheat breeding, the tetraploid GGAtAt genepool is largely neglected. Understanding the population structure, native distribution range, intraspecific variation of the entire tetraploid GGAtAt genepool and its domestication history would further its use for wheat improvement. We report the first comprehensive survey of genomic and cytogenetic diversity sampling the full breadth and depth of the tetraploid GGAtAt genepool. We show that the extant GGAtAt genepool consists of three distinct lineages. We provide detailed insights into the cytogenetic composition of GGAtAt wheats, revealed group-, and population-specific markers and show that chromosomal rearrangements play an important role in intraspecific diversity of T. araraticum. We discuss the origin and domestication history of the GGAtAt lineages in the context of state-of-the-art archaeobotanical finds. We shed new light on the complex evolutionary history of the GGAtAt wheat genepool. We provide the basis for an increased use of the GGAtAt wheat genepool for wheat improvement. The findings have implications for our understanding of the origins of agriculture in southwest Asia.


Author(s):  
L.M. Kryvosheieva ◽  
V.I. Chuchvaha ◽  
N.M. Kandyba

Aim. Based on the results of multi-year research into the flax gene pool, to form a flax training collection to provide breeding scientific organizations and educational institutions with collection samples as well as with information about the bast crop gene pool. Results and Discussion. The studies were conducted in the crop rotation fields for breeding and seed production of the Institute of Bast Crops of the NAAS (Hlukhiv, Sumska Oblast) in 1992-2018. The field measurements and laboratory analyses were carried out in accordance with conventional methods of field and laboratory studies of collection flax samples.The article presents the results on the formation of a training collection of flax at the Institute of Bast Crops of the NAAS, which has 117 accessions (11 botanical species and three varieties) from 22 countries. In addition to species diversity, the collection includes accessions with different levels of expression of valuable economic and biological characteristics. It also includes accessions selected by phenotypic variability of individual characters or their combinations. The multi-year research into the flax collection accessions resulted in identification of sources of highly-expressed valuable economic traits, which are of interest for the plant breeding course. The history of flax breeding in Ukraine is shown, where breeding varieties that are most widespread or were significant breeding achievements in solving certain problems, are presented. The collection can be used as a visual aid for the plant breeding course in educational programs; in addition, it can provide starting material for scientific and educational institutions. The collection is registered with the National Center for Plant Genetic Resources of Ukraine (certificate No. 00273 dated 04/11/2019). Conclusions. The studies of accessions from the national flax collection allowed us to build up a training collection and register it with the NCPGRU. The collection represents a wide range of biological and economic features of the gene pool of this crop. The collection can be used in the educational process of educational agricultural and biological institutions. The multi-year research into the national flax collection resulted in identification of sources of highly-expressed valuable economic traits, which are of interest to the plant breeding course. The history of flax breeding in Ukraine got covered, and breeding varieties that are most widespread or were significant breeding achievements in solving certain problems are presented.


2021 ◽  
Vol 11 (4) ◽  
Author(s):  
Yury A Barbitoff ◽  
Andrew G Matveenko ◽  
Anton B Matiiv ◽  
Evgeniia M Maksiutenko ◽  
Svetlana E Moskalenko ◽  
...  

Abstract Thousands of yeast genomes have been sequenced with both traditional and long-read technologies, and multiple observations about modes of genome evolution for both wild and laboratory strains have been drawn from these sequences. In our study, we applied Oxford Nanopore and Illumina technologies to assemble complete genomes of two widely used members of a distinct laboratory yeast lineage, the Peterhof Genetic Collection (PGC), and investigate the structural features of these genomes including transposable element content, copy number alterations, and structural rearrangements. We identified numerous notable structural differences between genomes of PGC strains and the reference S288C strain. We discovered a substantial enrichment of mid-length insertions and deletions within repetitive coding sequences, such as in the SCH9 gene or the NUP100 gene, with possible impact of these variants on protein amyloidogenicity. High contiguity of the final assemblies allowed us to trace back the history of reciprocal unbalanced translocations between chromosomes I, VIII, IX, XI, and XVI of the PGC strains. We show that formation of hybrid alleles of the FLO genes during such chromosomal rearrangements is likely responsible for the lack of invasive growth of yeast strains. Taken together, our results highlight important features of laboratory yeast strain evolution using the power of long-read sequencing.


2019 ◽  
Vol 17 (04) ◽  
pp. 386-389
Author(s):  
Miguel Bento ◽  
Sónia Gomes Pereira ◽  
Wanda Viegas ◽  
Manuela Silva

AbstractAssessing durum wheat genomic diversity is crucial in a changing environmental particularly in the Mediterranean region where it is largely used to produce pasta. Durum wheat varieties cultivated in Portugal and previously assessed regarding thermotolerance ability were screened for the variability of coding sequences associated with technological traits and repetitive sequences. As expected, reduced variability was observed regarding low molecular weight glutenin subunits (LMW-GS) but a specific LMW-GS allelic form associated with improved pasta-making characteristics was absent in one variety. Contrastingly, molecular markers targeting repetitive elements like microsatellites and retrotransposons – Inter Simple Sequence Repeat (ISSR) and Inter Retrotransposons Amplified Polymorphism (IRAP) – disclosed significant inter and intra-varietal diversity. This high level of polymorphism was revealed by the 20 distinct ISSR/IRAP concatenated profiles observed among the 23 individuals analysed. Interestingly, median joining networks and PCoA analysis grouped individuals of the same variety and clustered varieties accordingly with geographical origin. Globally, this work demonstrates that durum wheat breeding strategies induced selection pressure for some relevant coding sequences while maintaining high levels of genomic variability in non-coding regions enriched in repetitive sequences.


1984 ◽  
Vol 75 (2) ◽  
pp. 113-133 ◽  
Author(s):  
Gordon B. Curry ◽  
B. J. Bluck ◽  
C. J. Burton ◽  
J. K. Ingham ◽  
David J. Siveter ◽  
...  

I. ABSTRACT: Research interest in the Highland Border Complex has been pursued sporadically during the past 150 years. The results and conclusions have emphasised the problems of dealing with a lithologically disparate association which crops out in isolated, fault-bounded slivers along the line of the Highland Boundary fault. For much of the present century, the debate has centred on whether the rocks of the complex have affinities with the Dalradian Supergroup to the N, or are a discrete group. Recent fossil discoveries in a wide variety of Highland Border rocks have confirmed that many are of Ordovician age, and hence cannot have been involved in at least the early Grampian deformational events (now accurately dated as pre-Ordovician) which affect the Dalradian Supergroup. Such palaeontological discoveries form the basis for a viable biostratigraphical synthesis. On a regional scale, it is apparent that the geological history of the Highland Border rocks must be viewed in the context of plate boundary tectonism along the entire northwestern margin of Iapetus during Palaeozoic times.II. ABSTRACT: Silicified articulate brachiopods from the Lower Ordovician (Arenig) Dounans Limestone are extremely rare but the stratigraphically diagnostic generaArchaeorthisSchuchert and Cooper, andOrthidiumHall and Clarke, have been identified. In addition, three specimens with characteristic syntrophiid morphology have been recovered. Inarticulate brachiopods are known from Stonehaven and Bofrishlie Burn near Aberfoyle, and have also been previously recorded from Arran.III. ABSTRACT: Micropalaeontological investigation of the Highland Border Complex has produced a range of microfossils including chitinozoans, coleolids, calcispheres and other more enigmatic objects. The stratigraphical ranges of the species lie almost entirely within the Ordovician and reveal a scatter of ages for different lithologies from the Arenig through to the Caradoc or Ashgill, with a pronounced erosional break between the Llandeilo and the Caradoc.IV. ABSTRACT: A Lower Ordovician (Arenig Series) silicified ostracode fauna from the Highland Border Dounans Limestone at Lime Craig Quarry, Aberfoyle, Central Scotland, represents the earliest record of this group of Crustacea from the British part of the early Palaeozoic ‘North American’ plate.V. ABSTRACT: Palaeontological age determinations for a variety of Highland Border rocks are presented. The data are based on the results of recent prospecting which has demonstrated that macro- and microfossils are present in a much greater range of Highland Border lithologies than previously realised. Data from other studies are also incorporated, as are modern taxonomie re-assessments of older palaeontological discoveries, in a comprehensive survey of Highland Border biostratigraphy. These accumulated data demonstrate that all fossiliferous Highland Border rocks so far discovered are of Ordovician age, with the exception of the Lower Cambrian Leny Limestone.VI. ABSTRACT: The Highland Border Complex consists of at least four rock assemblages: a serpentinite and possibly other ophiolitic rocks of Early or pre-Arenig age; a sequence of limestones and conglomerates of Early Arenig age; a succession of dark shales, cherts, quartz wackes, basic lavas and associated volcanogenic sediments of Llanvirn and ? earlier age; and an assemblage of limestones, breccias, conglomerates and arenites with subordinate shales of Caradoc or Ashgill age. At least three assemblages are divided by unconformities and in theirmost general aspect have similarities with coeval rocks in western Ireland.The Highland Border Complex probably formed N of the Midland Valley arc massif in a marginal sea comparable with the Sunda shelf adjacent to Sumatra–Java. Strike-slip and thrust emplacement of the whole Complex in at least four episodes followed the probable generation of all or part of its rocks by pull-apart mechanisms.


2017 ◽  
Vol 122 (9) ◽  
pp. 1824-1854 ◽  
Author(s):  
Lu Pan ◽  
Bethany L. Ehlmann ◽  
John Carter ◽  
Carolyn M. Ernst

2022 ◽  
Vol 23 (2) ◽  
pp. 891
Author(s):  
Wenjie Yue ◽  
Haobin Zhang ◽  
Xuming Sun ◽  
Ning Su ◽  
Qi Zhao ◽  
...  

Autophagy is an indispensable biological process and plays crucial roles in plant growth and plant responses to both biotic and abiotic stresses. This study systematically identified autophagy-related proteins (ATGs) in wheat and its diploid and tetraploid progenitors and investigated their genomic organization, structure characteristics, expression patterns, genetic variation, and regulation network. We identified a total of 77, 51, 29, and 30 ATGs in wheat, wild emmer, T. urartu and A. tauschii, respectively, and grouped them into 19 subfamilies. We found that these autophagy-related genes (ATGs) suffered various degrees of selection during the wheat’s domestication and breeding processes. The genetic variations in the promoter region of Ta2A_ATG8a were associated with differences in seed size, which might be artificially selected for during the domestication process of tetraploid wheat. Overexpression of TaVAMP727 improved the cold, drought, and salt stresses resistance of the transgenic Arabidopsis and wheat. It also promoted wheat heading by regulating the expression of most ATGs. Our findings demonstrate how ATGs regulate wheat plant development and improve abiotic stress resistance. The results presented here provide the basis for wheat breeding programs for selecting varieties of higher yield which are capable of growing in colder, drier, and saltier areas.


1987 ◽  
pp. 51-70 ◽  
Author(s):  
F. G. H. Lupton
Keyword(s):  

Author(s):  
Yu.S. Osipova ◽  

The article presents the results of research of hop varieties collected from various hop-producing countries of the world in order to preserve the genetic resources of this crop. The history of the development of the bioresource genetic collection of common hops (Humulus lupulus L.) is described. In Chuvashia in 1980, work began on the collection and creation of a collection of hops. In many countries of the world, national programs are being developed for the conservation and use of plant genetic resources, including hops.


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