Maintenance of Intraspecific Diversity in Response to Species Competition and Nutrient Fluctuations

Intraspecific diversity is a substantial part of biodiversity, yet little is known about its maintenance. Understanding mechanisms of intraspecific diversity shifts provides realistic detail about how phytoplankton communities evolve to new environmental conditions, a process especially important in times of climate change. Here, we aimed to identify factors that maintain genotype diversity and link the observed diversity change to measured phytoplankton morpho-functional traits Vmax and cell size of the species and genotypes. In an experimental setup, the two phytoplankton species Emiliania huxleyi and Chaetoceros affinis, each consisting of nine genotypes, were cultivated separately and together under different fluctuation and nutrient regimes. Their genotype composition was assessed after 49 and 91 days, and Shannon’s diversity index was calculated on the genotype level. We found that a higher intraspecific diversity can be maintained in the presence of a competitor, provided it has a substantial proportion to total biovolume. Both fluctuation and nutrient regime showed species-specific effects and especially structured genotype sorting of C. affinis. While we could relate species sorting with the measured traits, genotype diversity shifts could only be partly explained. The observed context dependency of genotype maintenance suggests that the evolutionary potential could be better understood, if studied in more natural settings including fluctuations and competition.

Diversity of Land Snail Tribe Helicini (Gastropoda: Stylommatophora: Helicidae): Where Do We Stand after 20 Years of Sequencing Mitochondrial Markers?

Sequences of mitochondrial genes revolutionized the understanding of animal diversity and continue to be an important tool in biodiversity research. In the tribe Helicini, a prominent group of the western Palaearctic land snail fauna, mitochondrial data accumulating since the 2000s helped to newly delimit genera, inform species-level taxonomy and reconstruct past range dynamics. We combined the published data with own unpublished sequences and provide a detailed overview of what they revealed about the diversity of the group. The delimitation of Helix is revised by placing Helix godetiana back in the genus and new synonymies are suggested within the genera Codringtonia and Helix. The spatial distribution of intraspecific mitochondrial lineages of several species is shown for the first time. Comparisons between species reveal considerable variation in distribution patterns of intraspecific lineages, from broad postglacial distributions to regions with a fine-scale pattern of allopatric lineage replacement. To provide a baseline for further research and information for anyone re-using the data, we thoroughly discuss the gaps in the current dataset, focusing on both taxonomic and geographic coverage. Thanks to the wealth of data already amassed and the relative ease with which they can be obtained, mitochondrial sequences remain an important source of information on intraspecific diversity over large areas and taxa.

Pandora’s Box in the Deep Sea –Intraspecific Diversity Patterns and Distribution of Two Congeneric Scavenging Amphipods

Paralicella tenuipesChevreux, 1908 and Paralicella caperescaShulenberger and Barnard, 1976 are known as widely distributed deep-sea scavenging amphipods. Some recent studies based on genetic data indicated the presence of high intraspecific variation of P. caperesca suggesting it is a species complex. Based on published molecular data from the Pacific and Indian oceans and new material obtained from the North and South Atlantic, we integrated the knowledge on the intraspecific variation and species distribution of the two nominal taxa. The study included analysis of three genes (COI, 16S rRNA, 28S rRNA) and revealed the existence of a single Molecular Operational Taxonomic Unit (MOTU) within P. tenuipes and six different MOTUs forming P. caperesca. The distribution pattern of the recognized lineages varied with three (P. tenuipes, MOTU 1 and MOTU 5 of P. caperesca) being widely distributed. There was evidence of contemporary population connectivity expressed by the share of the same COI haplotypes by individuals from very distant localities. At the same time no signal of recent demographic changes was observed within the studied taxa. The time-calibrated phylogeny suggested the emergence of species to be at the time of Mesozoic/Cenozoic transition that may be associated with global changes of the ocean circulation and deep sea water cooling.

Mito-nuclear selection induces a trade-off between species ecological dominance and evolutionary lifespan

Micro-evolutionary processes acting in populations and communities ultimately produce macro-evolutionary patterns. However, current models of species life histories -- including processes of speciation, persistence, hybridization, and eventual extinction -- rarely connect these two time scales. This leaves us with a limited theoretical understanding of the subtleties of diversification, such as the relationship between species abundance in an ecological community and species longevity over evolutionary time, or the impact of selection on patterns of speciation and extinction when structuring an ecological community. Here we present a model for evolution in spatially extended populations with a focus on selection for mito-nuclear compatibility. We find that mito-nuclear selection acting at the individual level decreases genetic variability among species in a radiation, reducing the total number of species and skewing species abundances distributions towards mono-dominance. Also, intraspecific diversity increases as species become more abundant, leading to frequent evolutionary branching that reduces species lifetimes. The equilibrium of such communities is characterized by high rates of speciation, extinction, and hybridization, i.e., high turnover rate. These theoretical results are in concordance with empirical patterns of diversity across latitudinal gradients. Model predictions in the absence of mito-nuclear selection resemble the tropics, with high biodiversity, old species, and low speciation and extinction rates. Whereas model predictions under strong selection, which we expect in the harsh environments of temperate zones, produce fewer species and elevated recent speciation rates.

Combining Genetic Gain and Diversity in Plant Breeding: Heritability of Root Selection in Wheat Populations

To increase the resilience of agroecological farming systems against weeds, pests, and pathogens, evolutionary breeding of diversified crop populations is highly promising. A fundamental challenge in population breeding is to combine effective selection and breeding progress while maintaining intraspecific diversity. A hydroponic system was tested for its suitability to non-destructively select root traits on a population level in order to achieve genetic gain and maintain diversity. Forty wheat progenies were selected for long seminal root length (SRL) and 40 for short SRL from a wheat composite cross population grown in a hydroponic system. Wheat progenies were multiplied, and a subset evaluated again in a hydroponic system. Preliminary tests in soil and competition experiments with a model weed were performed. The hydroponic selection for long SRL led to an increase of SRL by 1.6 cm (11.6%) in a single generation. Heritability for selection of SRL was 0.59. Selecting for short SRL had no effect. The preliminary soil-based test confirmed increased shoot length but not increased SRL. Preliminary competition experiments point to slightly improved competitive response of wheat progenies but no improved competitive effect on mustard. These results indicate a heritable selection effect for SRL on a population level, combining genetic gain and intraspecific diversity.

Interactions Between Environment and Genetic Diversity in Perennial Grass Phenology: A Review of Processes at Plant Scale and Modeling

In perennial grasses, the reproductive development consists of major phenological stages which highly determine the seasonal variations of grassland biomass production in terms of quantity and quality. The reproductive development is regulated by climatic conditions through complex interactions subjected to high genetic diversity. Understanding these interactions and their impact on plant development and growth is essential to optimize grassland management and identify the potential consequences of climate change. Here, we review the main stages of reproductive development, from floral induction to heading, i.e., spike emergence, considering the effect of the environmental conditions and the genetic diversity observed in perennial grasses. We first describe the determinants and consequences of reproductive development at individual tiller scale before examining the interactions between plant tillers and their impact on grassland perenniality. Then, we review the available grassland models through their ability to account for the complexity of reproductive development and genetic × environmental interactions. This review shows that (1) The reproductive development of perennial grasses is characterized by a large intraspecific diversity which has the same order of magnitude as the diversity observed between species or environmental conditions. (2) The reproductive development is determined by complex interactions between the processes of floral induction and morphogenesis of the tiller. (3) The perenniality of a plant is dependent on the reproductive behavior of each tiller. (4) Published models only partly explain the complex interactions between morphogenesis and climate on reproductive development. (5) Introducing more explicitly the underlying processes involved in reproductive development in models would improve our ability to anticipate grassland behavior in future growth conditions.

Cryptic Diversity of Isaria-like Species in Guizhou, China

Many Isaria-like species have recently been moved into more appropriate genera. However, more robust molecular phylogenetic analyses are still required for Isaria-like fungi to ensure accurate taxonomic identification. We analyzed these Isaria-like strains using multi-gene phylogenetics. Cryptic diversity was discovered in several Isaria farinosa strains, and two new species, Samsoniella pseudogunnii and S. pupicola, are proposed. Our results reveal that more attention needs to be paid to cryptic intraspecific diversity across different isolates and genotypes of the Isaria-like species, some of which will need to be transferred to Samsoniella. Interestingly, S. hepiali, with a very broad host distribution, has been widely used as a medicinal and edible cordycipitoid fungus.

The importance of intraspecific diversity on duckweed growth with and without salt stress

The pollution of freshwater ecosystems is threatening freshwater plant species diversity worldwide. Freshwater plants, such as duckweed (Lemna minor), are potentially sensitive to novel stressful environments. To test if intraspecific diversity could increase resistance to stressful environments, I used seven L. minor populations and assessed their growth rates in the absence and presence of moderate salt stress across an intraspecific diversity gradient.I grew the populations (ecotypes) of L. minor over five months in 92 experimental mesocosms in a glasshouse either in ecotype monocultures or in polyculture with either one or three conspecific ecotypes (23 unique compositions). The experiment was conducted in semi-natural conditions, including a natural community of algae and microbes. After assessing the duckweed growth rate in unperturbed conditions, the cultures were subjected to moderate salt stress (50mM NaCl) for several weeks. Population abundances were assessed weekly, both on the ecotype level and the whole-population level.Throughout the experiment, the ecotypes differed in their growth rates, the fastest growing at twice the rate of others. Whether the ecotypes grew in monoculture or in polyculture with other conspecifics further shaped the ecotype growth rates. Ecotype polycultures showed higher abundances towards the end of the experiment, indicating that over time, as the environment deteriorated, intraspecific diversity gained in importance. These findings show that intraspecific variation in growth rates can translate to a positive effect of intraspecific diversity on whole-population abundance. Exposure of L. minor to moderate salt levels did not significantly impact growth rates.