scholarly journals Genetic characterization of an X-STR decaplex system in the State of Mato Grosso, Brazil: distribution, forensic efficiency and population structure

2017 ◽  
Vol 131 (6) ◽  
pp. 1523-1530
Author(s):  
Joyce A. Martins ◽  
Denise P. Martins ◽  
Camila I. F. Oliveira-Brancati ◽  
Juliana Martinez ◽  
Regina M. B. Cicarelli ◽  
...  
2019 ◽  
Vol 18 (4) ◽  
Author(s):  
A.V. Tiago ◽  
E.S.S. Hoogerheide ◽  
E.C.M. Pedri ◽  
F.S. Rossi ◽  
E.S. Cardoso ◽  
...  

2009 ◽  
Vol 144 (1-2) ◽  
pp. 215-224 ◽  
Author(s):  
Pedro Carnieli ◽  
Juliana Galera Castilho ◽  
Willian de Oliveira Fahl ◽  
Nazle Mendonça Collaço Véras ◽  
Maria do Carmo Sampaio Tavares Timenetsky

Plant Disease ◽  
2018 ◽  
Vol 102 (2) ◽  
pp. 300-308 ◽  
Author(s):  
Yusuf Sen ◽  
Yesim Aysan ◽  
Mustafa Mirik ◽  
Duygu Ozdemir ◽  
Fien Meijer-Dekens ◽  
...  

The pathogenic gram-positive bacterium Clavibacter michiganensis subsp. michiganensis (Smith) Davis et al. is the most harmful bacterium to tomatoes in many countries with a cooler climate. Multilocus sequence analysis was performed on five housekeeping genes (bipA, gyrB, kdpA, ligA, and sdhA) and three virulence-related genes (ppaA, chpC, and tomA) to determine evolutionary relationships and population structure of 108 C. michiganensis subsp. michiganensis strains collected from Turkey between 1996 and 2012. Based on these analyses, we concluded that C. michiganensis subsp. michiganensis in Turkey is highly uniform. However, at least four novel C. michiganensis subsp. michiganensis strains were recently introduced, possibly at the beginning of the 1990s. The singletons might point to additional sources or to strains that have evolved locally in Turkey.


2012 ◽  
Vol 69 (6) ◽  
pp. 1030-1037 ◽  
Author(s):  
Patricia Cabezas ◽  
Fernando Alda ◽  
Enrique Macpherson ◽  
Annie Machordom

Abstract Cabezas, P., Alda, F., Macpherson, E., and Machordom, A. 2012. Genetic characterization of the endangered and endemic anchialine squat lobster Munidopsis polymorpha from Lanzarote (Canary Islands): management implications. – ICES Journal of Marine Science, 69: 1030–1037. Anchialine species show restricted geographic ranges, high habitat specificity, and small population sizes. These factors make them particularly vulnerable to human activities, yet little is known about their ecology and evolutionary history. Munidopsis polymorpha is a decapod endemic to an anchialine cave system of the Corona lava tube in Lanzarote (Canary Islands). The present study, the first genetic survey conducted on this largely unknown species, was designed to characterize its genetic diversity, population structure and recent demographic history, using sequence data for the cytochrome oxidase I gene and eight microsatellites. A single haplotype was identified in the mitochondrial dataset. Nuclear genetic diversity was also low (average = 4.375 ± 1.685). No significant genetic structure was detected between sampling sites and years, either by analysis of molecular variance (FST = 0.006, p = 0.110) or Bayesian clustering analysis (K = 1), indicating this species should be treated as a single management unit. Neither did we find evidence for a recent bottleneck event, and estimates of effective population size were extremely low (∼50). The lack of population structure, low genetic diversity and extremely low effective population size reinforce the high degree of isolation and endemicity of this species, and, consequently, the need to implement appropriate management actions.


2012 ◽  
Vol 32 (3) ◽  
pp. 237-242 ◽  
Author(s):  
Fernanda D.F. Silva ◽  
Fábio Gregori ◽  
Ana C.S. Gonçalves ◽  
Samir Issa Samara ◽  
Maria G. Buzinaro

Rotavirus is an important cause of neonatal diarrhea in humans and several animal species, including calves. A study was conducted to examine 792 fecal samples collected from calves among 65 dairy and beef herds distributed in two of Brazil's major livestock producing regions, aiming to detect the occurrence of rotavirus and perform a molecular characterization of the rotavirus according to G and P genotypes in these regions. A total of 40 (5.05%) samples tested positive for rotavirus by the polyacrylamide gel electrophoresis (PAGE) technique. The molecular characterization was performed by multiplex semi-nested RT-PCR reactions, which indicated that the associations of genotypes circulating in herds in Brazil's southeastern region were G6P[11], G10P[11], G[-]P[5] + [11], G[-]P[6] in the state of São Paulo and G6P[11], G8P[5], G11P[11], G10P[11] in the state of Minas Gerais. In the central-western region, the genotypes G6P[5] + [11], G6P[5], G8P[-], G6P[11], G [-] P[1], G[-] P[11], and G[-] P[5] were detected in the state of Goiás, while the genotypes G6P[5], G8[P11], G6[P11], G8[P1], G8[P5], G6[P1] were circulating in herds in the state of Mato Grosso do Sul. The genotypic diversity of bovine rotavirus found in each region under study underlines the importance of characterizing the circulating samples in order to devise the most effective prophylactic measures.


2002 ◽  
Vol 35 (8) ◽  
pp. 869-872 ◽  
Author(s):  
M.P. Miagostovich ◽  
F.B. dos Santos ◽  
T.S. de Simone ◽  
E.V. Costa ◽  
A.M.B. Filippis ◽  
...  

2020 ◽  
Author(s):  
Camila Bezerra ◽  
Alb rio Gomes ◽  
S rgio Santos de Azevedo ◽  
Clebert Alves ◽  
Leila Ullmann ◽  
...  

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