Effectiveness of DNA barcoding for identifying piscine prey items in stomach contents of piscivorous catfishes

2015 ◽  
Vol 99 (1) ◽  
pp. 161-167 ◽  
Author(s):  
Z. Moran ◽  
D. J. Orth ◽  
J. D. Schmitt ◽  
E.M. Hallerman ◽  
R. Aguilar
2016 ◽  
Vol 100 (4) ◽  
pp. 325-336 ◽  
Author(s):  
Robert Aguilar ◽  
Matthew B. Ogburn ◽  
Amy C. Driskell ◽  
Lee A. Weigt ◽  
Mary C. Groves ◽  
...  

2015 ◽  
Vol 11 (1) ◽  
Author(s):  
Teresa Santos ◽  
Carlos Fonseca ◽  
Tânia Barros ◽  
Raquel Godinho ◽  
Cristiane Bastos-Silveira ◽  
...  

2015 ◽  
Vol 72 (5) ◽  
pp. 1359-1369 ◽  
Author(s):  
Michael J. Miller ◽  
Jeff Dubosc ◽  
Elodie Vourey ◽  
Katsumi Tsukamoto ◽  
Valerie Allain

Abstract Leptocephali, the larvae of eels, grow to large sizes and are widely distributed in tropical and subtropical oceans. Their role in oceanic food webs is poorly known because they are rarely reported as food items in fish stomach content studies. Data from 13 years of research on the trophic dynamics of Pacific Ocean predatory fish indicate that among 8746 fish of 76 species/taxa (33 families) that had been feeding, only 16 fish of 6 species had remains of 34 leptocephali in their stomachs. Only 0.013% of the 256 308 total prey items were leptocephalus larvae, and 0.03% of the total prey items were juvenile or adult eels (mostly snipe eels: Nemichthyidae). There were 10 fish of 2 species of lancetfish (Alepisaurus spp., n = 152), 2 rainbow runners (Elagatis bipinnulata, n = 222), and 2 yellowfin tuna (Thunnus albacares, n = 3103) that had leptocephali in their stomach contents, but all except one T. albacares (contained 15 leptocephali) had each eaten ≤3 leptocephali. A swallower, Pseudoscopelus sp., and a frigate tuna, Auxis thazard, had eaten single leptocephali. Twenty-eight bigeye tuna, Thunnus obesus, had eaten 76 juvenile/adult nemichthyid or serrivomerid eels. A literature survey found that only 15 out of 75 examined publications listed leptocephali in the stomach contents of a total of 6 species out of ∼ 42 300 predatory fish of 40 species. The transparency of leptocephali and their apparent mimicry of gelatinous zooplankton could contribute to lower rates of predation. Their soft bodies likely digest rapidly, so although this study and existing literature indicate that leptocephali sometimes contribute to predatory fish diets, particularly for fish that do not exclude gelatinous prey types, and fish with low digestion rates in their stomachs such as lancetfish, their levels of contribution to fish diets and the impacts of predators on eel recruitment remain uncertain.


2007 ◽  
Vol 28 (4) ◽  
pp. 485-491 ◽  
Author(s):  
Diana Cupsa ◽  
Tibor Hartel ◽  
Severus-Daniel Covaciu-Marcov ◽  
István Sas ◽  
Éva-Hajnalka Kovács ◽  
...  

Abstract We examined the diet of Hyla arborea over its entire activity period (March to late September, 2004), and analysed a total of 585 adult samples. From the stomach contents we identified plant remains, shed-skin fragments, and animals. We identified a total of 2976 prey items, almost all of which originated from the terrestrial environment. Adult araneans and coleopterans were the most abundant prey items in the diet of the studied tree frogs. Some of the prey items become abundant in certain parts of the year (e.g. Homoptera, Lepidoptera larvae, Trichoptera). The dietary diversity index is high and exhibits seasonal changes. During the period of study an important seasonal change was observed in feeding intensity and in the type of consumed prey. Our results show that Hyla arborea has a broad dietary diversity which was expected as a consequence of exploiting the habitat both vertically and horizontally, possibly allowing access to a broader spectrum of prey.


DNA Barcodes ◽  
2015 ◽  
Vol 3 (1) ◽  
Author(s):  
Timothy J. Bartley ◽  
Heather E. Braid ◽  
Kevin S. McCann ◽  
Nigel P. Lester ◽  
Brian J. Shuter ◽  
...  

AbstractFood webs are important in understanding the structure, function, and behaviour of ecosystems, but, due to methodological limitations, are often poorly resolved in ways that impact food-web properties. Although DNA barcoding has proven useful in determining the diet of consumers, few studies have used this technique to determine food-web structure. These studies report mixed impacts on various food-web properties, but are limited by their taxonomic focus and their failure to evaluate DNA barcoding for both diet analysis and food-web structure. In this study, we show that, when compared to a morphological approach, DNA barcoding increases foodweb resolution by increasing the number and frequency of prey species identified in the stomach contents of eight species of Canadian boreal shield predatory fishes. In addition, we observed differences in food-web structure, such as increased generalism, habitat coupling, and omnivory, that have strong implications for food-web stability and dynamics. We conclude that DNA barcoding is a powerful tool to evaluate how resolution impacts foodweb properties and can help further our understanding of how food webs are structured by identifying feeding interactions in an unprecedented and highly detailed manner.


2013 ◽  
Vol 4 (2) ◽  
pp. 219-229 ◽  
Author(s):  
Hyunbin Jo ◽  
Jeong‐An Gim ◽  
Kwang‐Seuk Jeong ◽  
Heui‐Soo Kim ◽  
Gea‐Jae Joo

Author(s):  
Gabriel N. Genzano

The trophic ecology and seasonal changes in the diet of the intertidal hydrozoan Tubularia crocea were studied analysing the enteron contents of hydranths collected each season of the year. The relationship between feeding rate, prey availability, and re-suspension processes caused by tidal currents was also assessed. The most prevalent food items were diatoms and crustaceans. The most remarkable differences occurred during summer, when crustaceans were more abundant than diatoms. Conversely, diatoms were the most abundant prey during other seasons, and they were almost the only prey found during winter. There was no relationship between abundances of primary prey items in the water column and their occurrences in stomach contents. Instead, most prey items consisted of benthic organisms, primarily two species of diatoms (Grammatophora marina and Licmophora abreviatta) and fragments (usually appendages) of the amphipods Caprella sp. and Jassa falcata. Most food items were digested within 4–4·5 hours. The mean number of items captured per polyp per day was determined to be 115·2±19·2 in summer, 93·6±14·4 in autumn, 76·8±21·6 in winter and 199·2±31·2 in spring. Prey biomass (dry weight) polyp−1 d−1 was 5·1 μg in summer, 2·3 μg in autumn, 1·8 μg in winter, and 6·3 μg in spring. These values, in relation to hydranth biomass (55·3 μg; dry weight), were equivalent to a food intake polyp−1 d−1 of 9·3%, 4·2%, 3·2% and 11·5% of its own weight, respectively.


2019 ◽  
Vol 41 (3) ◽  
Author(s):  
Pham Van Anh ◽  
Nguyen Quang Truong ◽  
Nguyen Van Hoang

Since there is currently a lack of data on the natural history and feeding ecology of Odorrana chapaensis, which was listed in the IUCN Red List (2019), we herein provided the feeding ecology of this amphibian species is virtually lacking. We herein provide data about the diet of O. chapaensis based on the results of our field work in Ngoc Chien Commune, Muong La District and Xim Vang Commune, Bac Yen District, Son La Province, Vietnam. We used the stomach-flushing method to obtain the stomach contents of 85 individuals at two survey sites. A total of 20 prey categories with 334 items, comprising 299 items of invertebrates and 35 unidentified items, were found in the stomachs of O. chapaensis. The dominant prey items of O. chapaensis were Araneae, Polydesmida, insect larvae, Blattodea, Coleoptera, Dermaptera, Lepidoptera, Hymenoptera, and Orthoptera. The importance index for these categories ranged from 3.5% to 32.5%. Coleoptera was the category with the highest frequency of prey items; its representatives were found in 45 stomaches. 


Author(s):  
Chinnamani Prasannakumar ◽  
Gunasekaran Iyyapparajanarasimapallavan ◽  
M. Ashiq Ur Rahman ◽  
P. Mohanchander ◽  
T. Sudhakar ◽  
...  

AbstractIdentification and quantification of fish diet diversity was the first step in understanding the food web dynamics and ecosystem energetics, where the contribution of DNA barcoding technique has been important. We used DNA barcoding to identify the stomach contents of a euryhaline, benthophagous catfish Ariius maculatus. From 40 catfish stomach items sampled in two different seasons, we barcoded 67 piscine and macro-invertebrates prey items, identified as belonging to 13 species in 4 major phyla (viz., Chordate, Arthropod, Annelida and Mollusca). It is important to note that the mollusc taxa (Meritrix meritrix and Perna viridis) and a species of fish (Stolephorus indicus) could not be found among the gut contents of A. maculatus sampled during the pre- and post-monsoon season, respectively. Among the piscine diets of A. maculatus, Eubleekeria splendens (23.5%) and Stolephorus indicus (23.5%) were the major prey taxa during pre-monsoon season. The hermit crabs forms the major constituents of both pre- and post-monsoon seasons, among invertebrate taxa. Polychaete, Capitella capitata (25.92%) was abundantly consumed invertebrates next to hermit crabs. We noticed that in pre-monsoon A. maculatus was more piscivorous than post-monsoon. As revealed through Kimura-2 parametric pair­wise distance analysis, the diet diversity was relatively higher in post-monsoon. The accumulation curve estimated 57 haplotypes within 14 barcoded species (including the host A. maculatus). Majority of haplotypes were found among fishes (47.36%) followed by Arthropods (28.07%), Annelids (14.03%) and Mollusca (10.52%), respectively. This study also highlights that there is a growing concern about A. maculatus’s aggressive predation on commercially important stocks of fish and invertebrates. We will continue to expand the coverage of species barcoded in the reference database, which will become more significant as meta- and environmental DNA barcoding techniques become cheaper and prevalent.


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