Real-time PCR quantification and spatio-temporal distribution of airborne inoculum of Puccinia triticina in Belgium

2016 ◽  
Vol 145 (2) ◽  
pp. 405-420 ◽  
Author(s):  
Maxime Duvivier ◽  
Géraldine Dedeurwaerder ◽  
Charlotte Bataille ◽  
Michel De Proft ◽  
Anne Legrève
2013 ◽  
Vol 137 (2) ◽  
pp. 325-341 ◽  
Author(s):  
Maxime Duvivier ◽  
Géraldine Dedeurwaerder ◽  
Michel De Proft ◽  
Jean-Marc Moreau ◽  
Anne Legrève

2020 ◽  
Author(s):  
Yuanyuan Xu ◽  
Shuping Zhang ◽  
Yujun Guo ◽  
Wen Chen ◽  
Yanqun Huang

Abstract Background: The CDS gene encodes the CDP-diacylglycerol synthase enzyme that catalyzes the formation of CDP-diacylglycerol (CDP-DAG) from phosphatidic acid. At present, there are no reports of CDS2 in birds. Here, we identified chicken CDS2 transcripts by combining conventional RT- PCR amplification, 5' RACE (Fig. 1A), and 3' RACE, explored the spatio-temporal expression profiles of total CDS2 and the longest transcript variant CDS2-4, and investigated the effect of exogenous insulin on total the mRNA level of CDS2 by quantitative real-time PCR. Results: Four transcripts of chicken CDS2 (CDS2-1, -2, -3, and -4) were identified, which were alternatively spliced at the 3′-untranslated region (UTR). CDS2 was widely expressed in all tissues examined and the longest variant CDS2-4 was the major transcript. Both total CDS2 and CDS2-4 were prominently expressed in adipose tissue and the heart, and exhibited low expression in the liver and pectoralis of 49 day-old chickens. Quantitative real-time PCR revealed that total CDS2 and CDS2-4 had different spatio-temporal expression patterns in chicken. Total CDS2 exhibited a similar temporal expression tendency with a high level in the later period of incubation (embryonic day 19 [E19] or 1-day-old) in the brain, liver, and pectoralis. While CDS2-4 presented a distinct temporal expression pattern in these tissues, CDS2-4 levels peaked at 21 days in the brain and pectoralis, while liver CDS2-4 mRNA levels were highest at the early stage of hatching (E10). Total CDS2 (P < 0.001) and CDS2-4 (P = 0.0090) mRNA levels in the liver were differentially regulated throughout development of the chicken. Exogenous insulin significantly downregulated the level of total CDS2 at 240 min in the pectoralis of Silky chickens (P < 0.01). Total CDS2 levels in the liver of Silky chickens were higher than that of the broiler in the basal state and after insulin stimulation. Conclusion: Chicken CDS2 has multiple transcripts with variation at the 3′-UTR, which was prominently expressed in adipose tissue. Total CDS2 and CDS2-4 presented distinct spatio-temporal expression patterns, and they were differentially regulated with age in liver. Insulin could regulate chicken CDS2 levels in a breed- and tissue-specific manner.


2022 ◽  
Vol 116 ◽  
pp. 151-162
Author(s):  
Yonghong Liu ◽  
Wenfeng Huang ◽  
Xiaofang Lin ◽  
Rui Xu ◽  
Li Li ◽  
...  

Grana ◽  
2012 ◽  
Vol 51 (4) ◽  
pp. 270-279 ◽  
Author(s):  
Zbigniew Karolewski ◽  
Joanna Kaczmarek ◽  
Malgorzata Jedryczka ◽  
Hans J. Cools ◽  
Bart A. Fraaije ◽  
...  

2014 ◽  
Vol 63 (6) ◽  
pp. 1296-1305 ◽  
Author(s):  
A. Chandelier ◽  
M. Helson ◽  
M. Dvorak ◽  
F. Gischer

Plant Disease ◽  
2019 ◽  
Vol 103 (12) ◽  
pp. 3172-3180 ◽  
Author(s):  
A. K. Lees ◽  
D. M. Roberts ◽  
J. Lynott ◽  
L. Sullivan ◽  
J. L. Brierley

Real-time loop-mediated isothermal amplification (LAMP) assays for the detection of sporangia of the causal pathogen of late blight, Phytophthora infestans, and spores of the main causal pathogen of early blight, Alternaria solani, were developed to facilitate the in-field detection of airborne inoculum to improve disease forecasting. These assays were compared with an existing real-time PCR assay for P. infestans and a newly developed real-time PCR assay for A. solani. Primers were designed for real-time LAMP of P. infestans and A. solani. The specificity of the P. infestans real-time LAMP assay was similar to that of an existing real-time PCR assay: DNA of P. infestans was consistently amplified as was DNA of the taxonomically closely related species Phytophthora mirabilis, Phytophthora phaseoli, and Phytophthora ipomoea; no amplification of DNA from the potato pathogens Phytophthora erythroseptica or Phytophthora nicotianae occurred. Real-time LAMP and PCR assays were developed for A. solani, and the specificity was compared with an existing conventional PCR assay. Importantly, the A. solani real-time LAMP and PCR assays did not amplify the species Alternaria alternata. However, cross-reactivity with Alternaria dauci was observed with the real-time PCR assay and Alternaria brassicae with the real-time LAMP assay. The sensitivity of all assays for the detection of DNA extracted from sporangia/spores of the target pathogens was evaluated. The P. infestans real-time LAMP assay reliably detected 5 pg of DNA, equivalent to ∼1 sporangia per reaction. By comparison, 20 fg of DNA was detectable with the existing real-time PCR assay. In the case of A. solani, real-time LAMP detected 4.4 pg of DNA, equivalent to ∼1 spore per reaction, and real-time PCR detected 200 fg of DNA. In-field air samplers were deployed in two trial plots planted with potato: one infected with P. infestans, and the other infected with A. solani. Four additional samplers were located in commercial potato fields. Air samples were taken through the season, and detection of airborne inoculum of P. infestans and A. solani with both real-time PCR and LAMP was assessed.


2021 ◽  
Vol 11 (8) ◽  
pp. 3302
Author(s):  
Andriyan Bayu Suksmono ◽  
Donny Danudirdjo ◽  
Antonius Darma Setiawan ◽  
Dien Rahmawati ◽  
Rizki Putra Prastio

We have constructed an imaging device that is capable of showing the spatio-temporal distribution of magnetic flux density in real-time. The device employs a set of AMR (anisotropic magneto-resistance) three-axis magnetometers, which are arranged into a two-dimensional sensor array. All of the magnetic field values measured by the array are collected by a microcontroller, which pre-processes and sends the data to a PDU (processing and display unit) implemented on a smartphone/tablet or a computer. The interpolation algorithm and display software in the PDU present the field as a high-resolution video; thus, the device works as a magnetic field camera. In the experiments, we employ the camera to map the field distribution of the distorted ambient magnetic field caused by a hidden object. The obtained image of field shows both the position and shape of the object. We also demonstrate the capability of the device to image a loaded power-line cable carrying a 50 Hz alternating current.


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